Clone Sequence Records
BO11281.3prime Sequence
549 bp (193 high quality bases) assembled on 2006-04-19
> BO11281.3prime
ATGGTCTAGAAAGCTTGCTGTCCCGGGCACCGCGCTCCTCTCAACTCCTC
TGCGGCAAAAATCCTGCAACTCCTCCAACTCCTGCAAATCCTGGCAGTTC
CGGTTGCTTCGTTGTCCCATTGCCTTTTCCTCGGCAAAGGTGCTTGCTTG
TTGGACGGCCCTACAGCCGGGGGGCGGGGCCGGAACAAGGGTGGAGCAGC
TGGCCACCACCTGGAGGAGCATCAGTGTGCTGCAGGTGACCAGGACCAGC
GGCAGCAAAACCGGCGGCTGGAACGCCGTAAAGTTACCGTTGTTGCCCGT
ATGCTTTGCCGCCGGATGCTCGCCATCAACAATATGCACGCGCACCGACG
TCGAATTGGCATTGGAGGGGGTGCATGTGTAAAGTCCCAAGTCCTGGGTG
ATGGCCTTCTGCACCAGGAGCCGGTGGGGGGTCAGCCCACCTTTCTCGGG
GACTAATGATATGCCGCCCCAAGGGGAATCGAAATTTATGATCTCCCGGT
TGTGGAACCAATTGAACGGTTGGCGGCGGTTCCGGTGCAAATTTCACAA
BO11281.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32600-PA | 1035 | dpr8-RA | 540..1032 | 511..19 | 1665 | 93.5 | Minus |
CG32600-PA | 1035 | dpr8-RA | 503..536 | 549..516 | 145 | 97 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr8-RB | 4837 | CG32600-RB | 1418..1947 | 549..19 | 2120 | 93.4 | Minus |
dpr8-RA | 4958 | CG32600-RA | 1539..2068 | 549..19 | 2120 | 93.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14459156..14459461 | 324..19 | 1290 | 94.8 | Minus |
X | 23542271 | X | 14454059..14454234 | 494..319 | 655 | 91.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:08:49 has no hits.
BO11281.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:02 Download gff for
BO11281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-PA | 505..1035 | 18..547 | 93 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:33 Download gff for
BO11281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32600-PA | 505..1035 | 18..547 | 93 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:44:15 Download gff for
BO11281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1541..2079 | 6..547 | 92 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:37 Download gff for
BO11281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1541..2079 | 6..547 | 92 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:37 Download gff for
BO11281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14454061..14454229 | 324..492 | 91 | -> | Minus |
X | 14459157..14459472 | 6..323 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:44:15 Download gff for
BO11281.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14348094..14348262 | 324..492 | 91 | -> | Minus |
arm_X | 14353190..14353505 | 6..323 | 93 | | Minus |
BO11281.5prime Sequence
760 bp (707 high quality bases) assembled on 2006-04-19
> BO11281.5prime
GAAGTTATCAGTCGACATGTCGACACATTGGATCATTTTTCTAGGCATTT
TGTGTCTGCTGGCAGGCTGCACGGACGGCGCCTCGAAGCGCTTCTTCACA
GACTTCCTGCAGGACCTGCCAACGCCCGGAACCGGAGGACCCACTTTCGA
CACGACCATTGGCACGAACATCACAGGACTCGTTGGCAAGACGGTGAAGC
TGACCTGCCGCGTTAAGAATTTGGGCAATCGCACGGTGTCCTGGGTGCGC
CACAGGGATATACACCTGCTGACCGTCGGCCGCTACACATACACATCCGA
CCAGAGATTCGAGGCAATGCACTCGCCGCACGCCGAGGATTGGACATTGC
GTATACGCTACGCGCAGCGCAAGGACTCCGGCATCTACGAGTGCCAGATA
TCGACCACGCCCCCAATTGGACACTCCGTCTACCTCAACATTGTTGAACC
CGTCACCGACATCATCGGCGGCCCCGAGCTGCACATCAACCGCGGATCCA
CCATCAATCTGACTTGCATTGTGAAATTCGCACCGGAACCGCCGCCAACC
GTCATTTGGTCCCACAACCGCGAGATCATAAATTTCGATTCACCTCGCGG
CGGCATATCATTAGTCACCGAGAAAGGTGTGCTGACCACCAGCCGGCTCC
TGGTGCAAAAGGCCATCACCCAAAACTCGGGACTCTACACATGCACACCC
CTCCAATGCCAATCCGACGTCGGTGCGCGTGCATATCGTCCAAGGCGAGC
ATCCGGCGGC
BO11281.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32600-PA | 1035 | dpr8-RA | 1..684 | 17..700 | 3345 | 99.5 | Plus |
CG32600-PA | 1035 | dpr8-RA | 682..743 | 699..760 | 260 | 96.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr8-RB | 4837 | CG32600-RB | 916..1658 | 17..760 | 3620 | 99.2 | Plus |
dpr8-RA | 4958 | CG32600-RA | 1037..1779 | 17..760 | 3620 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14444316..14444527 | 235..446 | 1060 | 100 | Plus |
X | 23542271 | X | 14425184..14425359 | 63..238 | 880 | 100 | Plus |
X | 23542271 | X | 14454059..14454225 | 573..740 | 745 | 97.6 | Plus |
X | 23542271 | X | 14452968..14453096 | 446..574 | 645 | 100 | Plus |
X | 23542271 | X | 14408273..14408322 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:55:50 has no hits.
BO11281.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:03 Download gff for
BO11281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-PA | 1..743 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:35 Download gff for
BO11281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32600-PA | 1..743 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:10 Download gff for
BO11281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1030..1779 | 9..760 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:26 Download gff for
BO11281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1030..1779 | 9..760 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:26 Download gff for
BO11281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14425187..14425356 | 66..235 | 100 | -> | Plus |
X | 14444317..14444527 | 236..446 | 100 | -> | Plus |
X | 14452969..14453096 | 447..574 | 100 | -> | Plus |
X | 14454061..14454229 | 575..744 | 96 | -> | Plus |
X | 14459157..14459172 | 745..760 | 100 | | Plus |
X | 14408266..14408321 | 9..65 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:10 Download gff for
BO11281.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14302299..14302354 | 9..65 | 93 | -> | Plus |
arm_X | 14319220..14319389 | 66..235 | 100 | -> | Plus |
arm_X | 14338350..14338560 | 236..446 | 100 | -> | Plus |
arm_X | 14347002..14347129 | 447..574 | 100 | -> | Plus |
arm_X | 14348094..14348262 | 575..744 | 96 | -> | Plus |
arm_X | 14353190..14353205 | 745..760 | 100 | | Plus |
BO11281.complete Sequence
1066 bp assembled on 2008-01-16
GenBank Submission: FJ632057
> BO11281.complete
GAAGTTATCAGTCGACATGTCGACACATTGGATCATTTTTCTAGGCATTT
TGTGTCTGCTGGCAGGCTGCACGGACGGCGCCTCGAAGCGCTTCTTCACA
GACTTCCTGCAGGACCTGCCAACGCCCGGAACCGGAGGACCCACTTTCGA
CACGACCATTGGCACGAACATCACAGGACTCGTTGGCAAGACGGTGAAGC
TGACCTGCCGCGTTAAGAATTTGGGCAATCGCACGGTGTCCTGGGTGCGC
CACAGGGATATACACCTGCTGACCGTCGGCCGCTACACATACACATCCGA
CCAGAGATTCGAGGCAATGCACTCGCCGCACGCCGAGGATTGGACATTGC
GTATACGCTACGCGCAGCGCAAGGACTCCGGCATCTACGAGTGCCAGATA
TCGACCACGCCCCCAATTGGACACTCCGTCTACCTCAACATTGTTGAACC
CGTCACCGACATCATCGGCGGCCCCGAGCTGCACATCAACCGCGGATCCA
CCATCAATCTGACTTGCATTGTGAAATTCGCACCGGAACCGCCGCCAACC
GTCATTTGGTCCCACAACCGCGAGATCATAAATTTCGATTCACCTCGCGG
CGGCATATCATTAGTCACCGAGAAAGGTGTGCTGACCACCAGCCGGCTCC
TGGTGCAGAAGGCCATCACCCAGGACTCGGGACTCTACACATGCACACCC
TCCAATGCCAATCCGACGTCGGTGCGCGTGCATATCGTCGATGGCGAGCA
TCCGGCGGCAATGCATACGGGCAACAACGGTAACTCTACGGCGTCCCAGC
CGCCGGTCTTGCTGCCGCTGGTCCTGCTCACCTGCAGCACACTGATGCTC
CTCCAGCTGGTGGCCAGCTGCTCCACCCTTGTCCCGGCCACGCCACCCGG
CTGTAGGACCGTCCAACAAGCAAGCACCTTCGCCGAGGAAAAGGCAATGG
GACAACGAAGCAACCGGAACTGCCAGGATCTGCAGGAGTTGGAGGAGTCG
CAGGATCTTCGCCGCAGAGGAGTCGAGAGGAGCGCGGTGCCCGGGACAGC
AAGCTTTCTAGACCAT
BO11281.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr8-RB | 1035 | CG32600-PB | 1..1032 | 17..1048 | 5160 | 100 | Plus |
dpr8-RA | 1035 | CG32600-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr8-RB | 4837 | CG32600-RB | 916..1947 | 17..1048 | 5160 | 100 | Plus |
dpr8-RA | 4958 | CG32600-RA | 1037..2068 | 17..1048 | 5160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14459156..14459461 | 743..1048 | 1530 | 100 | Plus |
X | 23542271 | X | 14444316..14444527 | 235..446 | 1060 | 100 | Plus |
X | 23542271 | X | 14425184..14425359 | 63..238 | 880 | 100 | Plus |
X | 23542271 | X | 14454059..14454234 | 573..748 | 865 | 99.4 | Plus |
X | 23542271 | X | 14452968..14453096 | 446..574 | 645 | 100 | Plus |
X | 23542271 | X | 14408273..14408322 | 17..66 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:07:32 has no hits.
BO11281.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:09 Download gff for
BO11281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1..1035 | 17..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:35 Download gff for
BO11281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1037..2068 | 17..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:19 Download gff for
BO11281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1037..2068 | 17..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:10 Download gff for
BO11281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1030..2079 | 9..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:38 Download gff for
BO11281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr8-RA | 1037..2068 | 17..1050 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:38 Download gff for
BO11281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14444317..14444527 | 236..446 | 100 | -> | Plus |
X | 14452969..14453096 | 447..574 | 100 | -> | Plus |
X | 14454061..14454229 | 575..743 | 100 | -> | Plus |
X | 14459157..14459461 | 744..1050 | 99 | | Plus |
X | 14425187..14425356 | 66..235 | 100 | -> | Plus |
X | 14408273..14408321 | 17..65 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:19 Download gff for
BO11281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14347002..14347129 | 447..574 | 100 | -> | Plus |
arm_X | 14348094..14348262 | 575..743 | 100 | -> | Plus |
arm_X | 14319220..14319389 | 66..235 | 100 | -> | Plus |
arm_X | 14338350..14338560 | 236..446 | 100 | -> | Plus |
arm_X | 14302306..14302354 | 17..65 | 100 | -> | Plus |
arm_X | 14353190..14353494 | 744..1050 | 99 | | Plus |
BO11281.pep Sequence
Translation from 16 to 1066
> BO11281.pep
MSTHWIIFLGILCLLAGCTDGASKRFFTDFLQDLPTPGTGGPTFDTTIGT
NITGLVGKTVKLTCRVKNLGNRTVSWVRHRDIHLLTVGRYTYTSDQRFEA
MHSPHAEDWTLRIRYAQRKDSGIYECQISTTPPIGHSVYLNIVEPVTDII
GGPELHINRGSTINLTCIVKFAPEPPPTVIWSHNREIINFDSPRGGISLV
TEKGVLTTSRLLVQKAITQDSGLYTCTPSNANPTSVRVHIVDGEHPAAMH
TGNNGNSTASQPPVLLPLVLLTCSTLMLLQLVASCSTLVPATPPGCRTVQ
QASTFAEEKAMGQRSNRNCQDLQELEESQDLRRRGVERSAVPGTASFLDH
BO11281.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr8-PB | 344 | CG32600-PB | 1..344 | 1..344 | 1819 | 100 | Plus |
dpr8-PA | 344 | CG32600-PA | 1..344 | 1..344 | 1819 | 100 | Plus |
dpr6-PC | 390 | CG14162-PC | 13..316 | 5..292 | 754 | 48.1 | Plus |
dpr6-PF | 396 | CG14162-PF | 13..322 | 5..292 | 739 | 47.5 | Plus |
CG42596-PC | 282 | CG42596-PC | 50..258 | 41..249 | 732 | 59.8 | Plus |