Clone BO11281 Report

Search the DGRC for BO11281

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptdpr8-RA
Protein status:BO11281.pep:
Sequenced Size:1066

Clone Sequence Records

BO11281.3prime Sequence

549 bp (193 high quality bases) assembled on 2006-04-19

> BO11281.3prime
ATGGTCTAGAAAGCTTGCTGTCCCGGGCACCGCGCTCCTCTCAACTCCTC
TGCGGCAAAAATCCTGCAACTCCTCCAACTCCTGCAAATCCTGGCAGTTC
CGGTTGCTTCGTTGTCCCATTGCCTTTTCCTCGGCAAAGGTGCTTGCTTG
TTGGACGGCCCTACAGCCGGGGGGCGGGGCCGGAACAAGGGTGGAGCAGC
TGGCCACCACCTGGAGGAGCATCAGTGTGCTGCAGGTGACCAGGACCAGC
GGCAGCAAAACCGGCGGCTGGAACGCCGTAAAGTTACCGTTGTTGCCCGT
ATGCTTTGCCGCCGGATGCTCGCCATCAACAATATGCACGCGCACCGACG
TCGAATTGGCATTGGAGGGGGTGCATGTGTAAAGTCCCAAGTCCTGGGTG
ATGGCCTTCTGCACCAGGAGCCGGTGGGGGGTCAGCCCACCTTTCTCGGG
GACTAATGATATGCCGCCCCAAGGGGAATCGAAATTTATGATCTCCCGGT
TGTGGAACCAATTGAACGGTTGGCGGCGGTTCCGGTGCAAATTTCACAA

BO11281.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG32600-PA 1035 dpr8-RA 540..1032 511..19 1665 93.5 Minus
CG32600-PA 1035 dpr8-RA 503..536 549..516 145 97 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
dpr8-RB 4837 CG32600-RB 1418..1947 549..19 2120 93.4 Minus
dpr8-RA 4958 CG32600-RA 1539..2068 549..19 2120 93.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14459156..14459461 324..19 1290 94.8 Minus
X 23542271 X 14454059..14454234 494..319 655 91.5 Minus
Blast to na_te.dros performed on 2015-02-10 20:08:49 has no hits.

BO11281.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:02 Download gff for BO11281.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr8-PA 505..1035 18..547 93   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:33 Download gff for BO11281.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32600-PA 505..1035 18..547 93   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:44:15 Download gff for BO11281.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1541..2079 6..547 92   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:37 Download gff for BO11281.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1541..2079 6..547 92   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:37 Download gff for BO11281.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14454061..14454229 324..492 91 -> Minus
X 14459157..14459472 6..323 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:44:15 Download gff for BO11281.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14348094..14348262 324..492 91 -> Minus
arm_X 14353190..14353505 6..323 93   Minus

BO11281.5prime Sequence

760 bp (707 high quality bases) assembled on 2006-04-19

> BO11281.5prime
GAAGTTATCAGTCGACATGTCGACACATTGGATCATTTTTCTAGGCATTT
TGTGTCTGCTGGCAGGCTGCACGGACGGCGCCTCGAAGCGCTTCTTCACA
GACTTCCTGCAGGACCTGCCAACGCCCGGAACCGGAGGACCCACTTTCGA
CACGACCATTGGCACGAACATCACAGGACTCGTTGGCAAGACGGTGAAGC
TGACCTGCCGCGTTAAGAATTTGGGCAATCGCACGGTGTCCTGGGTGCGC
CACAGGGATATACACCTGCTGACCGTCGGCCGCTACACATACACATCCGA
CCAGAGATTCGAGGCAATGCACTCGCCGCACGCCGAGGATTGGACATTGC
GTATACGCTACGCGCAGCGCAAGGACTCCGGCATCTACGAGTGCCAGATA
TCGACCACGCCCCCAATTGGACACTCCGTCTACCTCAACATTGTTGAACC
CGTCACCGACATCATCGGCGGCCCCGAGCTGCACATCAACCGCGGATCCA
CCATCAATCTGACTTGCATTGTGAAATTCGCACCGGAACCGCCGCCAACC
GTCATTTGGTCCCACAACCGCGAGATCATAAATTTCGATTCACCTCGCGG
CGGCATATCATTAGTCACCGAGAAAGGTGTGCTGACCACCAGCCGGCTCC
TGGTGCAAAAGGCCATCACCCAAAACTCGGGACTCTACACATGCACACCC
CTCCAATGCCAATCCGACGTCGGTGCGCGTGCATATCGTCCAAGGCGAGC
ATCCGGCGGC

BO11281.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32600-PA 1035 dpr8-RA 1..684 17..700 3345 99.5 Plus
CG32600-PA 1035 dpr8-RA 682..743 699..760 260 96.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
dpr8-RB 4837 CG32600-RB 916..1658 17..760 3620 99.2 Plus
dpr8-RA 4958 CG32600-RA 1037..1779 17..760 3620 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14444316..14444527 235..446 1060 100 Plus
X 23542271 X 14425184..14425359 63..238 880 100 Plus
X 23542271 X 14454059..14454225 573..740 745 97.6 Plus
X 23542271 X 14452968..14453096 446..574 645 100 Plus
X 23542271 X 14408273..14408322 17..66 250 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:55:50 has no hits.

BO11281.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:03 Download gff for BO11281.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr8-PA 1..743 17..760 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:35 Download gff for BO11281.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32600-PA 1..743 17..760 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:10 Download gff for BO11281.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1030..1779 9..760 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:26 Download gff for BO11281.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1030..1779 9..760 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:26 Download gff for BO11281.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14425187..14425356 66..235 100 -> Plus
X 14444317..14444527 236..446 100 -> Plus
X 14452969..14453096 447..574 100 -> Plus
X 14454061..14454229 575..744 96 -> Plus
X 14459157..14459172 745..760 100   Plus
X 14408266..14408321 9..65 93 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:10 Download gff for BO11281.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14302299..14302354 9..65 93 -> Plus
arm_X 14319220..14319389 66..235 100 -> Plus
arm_X 14338350..14338560 236..446 100 -> Plus
arm_X 14347002..14347129 447..574 100 -> Plus
arm_X 14348094..14348262 575..744 96 -> Plus
arm_X 14353190..14353205 745..760 100   Plus

BO11281.complete Sequence

1066 bp assembled on 2008-01-16

GenBank Submission: FJ632057

> BO11281.complete
GAAGTTATCAGTCGACATGTCGACACATTGGATCATTTTTCTAGGCATTT
TGTGTCTGCTGGCAGGCTGCACGGACGGCGCCTCGAAGCGCTTCTTCACA
GACTTCCTGCAGGACCTGCCAACGCCCGGAACCGGAGGACCCACTTTCGA
CACGACCATTGGCACGAACATCACAGGACTCGTTGGCAAGACGGTGAAGC
TGACCTGCCGCGTTAAGAATTTGGGCAATCGCACGGTGTCCTGGGTGCGC
CACAGGGATATACACCTGCTGACCGTCGGCCGCTACACATACACATCCGA
CCAGAGATTCGAGGCAATGCACTCGCCGCACGCCGAGGATTGGACATTGC
GTATACGCTACGCGCAGCGCAAGGACTCCGGCATCTACGAGTGCCAGATA
TCGACCACGCCCCCAATTGGACACTCCGTCTACCTCAACATTGTTGAACC
CGTCACCGACATCATCGGCGGCCCCGAGCTGCACATCAACCGCGGATCCA
CCATCAATCTGACTTGCATTGTGAAATTCGCACCGGAACCGCCGCCAACC
GTCATTTGGTCCCACAACCGCGAGATCATAAATTTCGATTCACCTCGCGG
CGGCATATCATTAGTCACCGAGAAAGGTGTGCTGACCACCAGCCGGCTCC
TGGTGCAGAAGGCCATCACCCAGGACTCGGGACTCTACACATGCACACCC
TCCAATGCCAATCCGACGTCGGTGCGCGTGCATATCGTCGATGGCGAGCA
TCCGGCGGCAATGCATACGGGCAACAACGGTAACTCTACGGCGTCCCAGC
CGCCGGTCTTGCTGCCGCTGGTCCTGCTCACCTGCAGCACACTGATGCTC
CTCCAGCTGGTGGCCAGCTGCTCCACCCTTGTCCCGGCCACGCCACCCGG
CTGTAGGACCGTCCAACAAGCAAGCACCTTCGCCGAGGAAAAGGCAATGG
GACAACGAAGCAACCGGAACTGCCAGGATCTGCAGGAGTTGGAGGAGTCG
CAGGATCTTCGCCGCAGAGGAGTCGAGAGGAGCGCGGTGCCCGGGACAGC
AAGCTTTCTAGACCAT

BO11281.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
dpr8-RB 1035 CG32600-PB 1..1032 17..1048 5160 100 Plus
dpr8-RA 1035 CG32600-PA 1..1032 17..1048 5160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
dpr8-RB 4837 CG32600-RB 916..1947 17..1048 5160 100 Plus
dpr8-RA 4958 CG32600-RA 1037..2068 17..1048 5160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14459156..14459461 743..1048 1530 100 Plus
X 23542271 X 14444316..14444527 235..446 1060 100 Plus
X 23542271 X 14425184..14425359 63..238 880 100 Plus
X 23542271 X 14454059..14454234 573..748 865 99.4 Plus
X 23542271 X 14452968..14453096 446..574 645 100 Plus
X 23542271 X 14408273..14408322 17..66 250 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:07:32 has no hits.

BO11281.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:09 Download gff for BO11281.complete
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1..1035 17..1049 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:35 Download gff for BO11281.complete
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1037..2068 17..1050 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:19 Download gff for BO11281.complete
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1037..2068 17..1050 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:10 Download gff for BO11281.complete
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1030..2079 9..1061 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:04:38 Download gff for BO11281.complete
Subject Subject Range Query Range Percent Splice Strand
dpr8-RA 1037..2068 17..1050 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:04:38 Download gff for BO11281.complete
Subject Subject Range Query Range Percent Splice Strand
X 14444317..14444527 236..446 100 -> Plus
X 14452969..14453096 447..574 100 -> Plus
X 14454061..14454229 575..743 100 -> Plus
X 14459157..14459461 744..1050 99   Plus
X 14425187..14425356 66..235 100 -> Plus
X 14408273..14408321 17..65 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:19 Download gff for BO11281.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14347002..14347129 447..574 100 -> Plus
arm_X 14348094..14348262 575..743 100 -> Plus
arm_X 14319220..14319389 66..235 100 -> Plus
arm_X 14338350..14338560 236..446 100 -> Plus
arm_X 14302306..14302354 17..65 100 -> Plus
arm_X 14353190..14353494 744..1050 99   Plus

BO11281.pep Sequence

Translation from 16 to 1066

> BO11281.pep
MSTHWIIFLGILCLLAGCTDGASKRFFTDFLQDLPTPGTGGPTFDTTIGT
NITGLVGKTVKLTCRVKNLGNRTVSWVRHRDIHLLTVGRYTYTSDQRFEA
MHSPHAEDWTLRIRYAQRKDSGIYECQISTTPPIGHSVYLNIVEPVTDII
GGPELHINRGSTINLTCIVKFAPEPPPTVIWSHNREIINFDSPRGGISLV
TEKGVLTTSRLLVQKAITQDSGLYTCTPSNANPTSVRVHIVDGEHPAAMH
TGNNGNSTASQPPVLLPLVLLTCSTLMLLQLVASCSTLVPATPPGCRTVQ
QASTFAEEKAMGQRSNRNCQDLQELEESQDLRRRGVERSAVPGTASFLDH

BO11281.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
dpr8-PB 344 CG32600-PB 1..344 1..344 1819 100 Plus
dpr8-PA 344 CG32600-PA 1..344 1..344 1819 100 Plus
dpr6-PC 390 CG14162-PC 13..316 5..292 754 48.1 Plus
dpr6-PF 396 CG14162-PF 13..322 5..292 739 47.5 Plus
CG42596-PC 282 CG42596-PC 50..258 41..249 732 59.8 Plus