Clone Sequence Records
BO11283.3prime Sequence
440 bp (439 high quality bases) assembled on 2006-04-19
> BO11283.3prime
ATGGTCTAGAAAGCTTGCACAAAATACAGAACACAAAACACAGAGCCTAA
CCGTAACCGTAACAAAACAGTCATACAAATTAAGACGAATGGGGTTTATG
GCACGAATTTTATGCGCATACAATACTAGGTACAAATAGACGTGTATCCA
ACAAATTGACAATGGAACCGAACCGAGGCGGATGGCAAATAACCGGGCCA
AAACGCCACCGACCAGGATGGCTTGGATGGACTGGATGGGCTGGATGGTA
CGGAGACCACGAGGAGCCCGAACGAGGAGCGACAACAAATTAATAGAACA
ATCGGGCACACCGACGACAACGGAACGGGCAAAAAATGAATGAGCACATA
AAATATTGCATAAATAAATGAAATGAATTGAAATGAAAATGGCAATGTGA
GAATATACGTTGTATGTGTGGGTCATGTCGACTGATAACT
BO11283.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:20:38 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 10:20:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21328585..21328993 | 19..427 | 2045 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 1063..1115 | 211..264 | 141 | 75.9 | Plus |
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1986..2010 | 42..18 | 107 | 92 | Minus |
BO11283.3prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:16 Download gff for
BO11283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21328577..21328993 | 11..427 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:16 Download gff for
BO11283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21328577..21328993 | 11..427 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:34:45 Download gff for
BO11283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17154299..17154715 | 11..427 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:34:45 Download gff for
BO11283.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17154299..17154715 | 11..427 | 99 | | Plus |
BO11283.5prime Sequence
440 bp (439 high quality bases) assembled on 2006-04-19
> BO11283.5prime
GAAGTTATCAGTCGACATGACCCACACATACAACGTATATTCTCACATTG
CCATTTTCATTTCAATTCATTTCATTTATTTATGCAATATTTTATGTGCT
CATTCATTTTTTGCCCGTTCCGTTGTCGTCGGTGTGCCCGATTGTTCTAT
TAATTTGTTGTCGCTCCTCGTTCGGGCTCCTCGTGGTCTCCGTACCATCC
AGCCCATCCAGTCCATCCAAGCCATCCTGGTCGGTGGCGTTTTGGCCCGG
TTATTTGCCATCCGCCTCGGTTCGGTTCCATTGTCAATTTGTTGGATACA
CGTCTATTTGTACCTAGTATTGTATGCGCATAAAATTCGTGCCATAAACC
CCATTCGTCTTAATTTGTATGACTGTTTTGTTACGGTTACGGTTAGGCTC
TGTGTTTTGTGTTCTGTATTTTGTGCAAGCTTTCTAGACC
BO11283.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:20:39 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 01:07:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21328585..21328993 | 424..16 | 2045 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 01:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 1063..1115 | 232..179 | 141 | 75.9 | Minus |
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1986..2010 | 401..425 | 107 | 92 | Plus |
BO11283.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:25 Download gff for
BO11283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21328577..21328993 | 16..432 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:25 Download gff for
BO11283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21328577..21328993 | 16..432 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:06:13 Download gff for
BO11283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17154299..17154715 | 16..432 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:06:13 Download gff for
BO11283.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17154299..17154715 | 16..432 | 99 | | Minus |
BO11283.complete Sequence
442 bp assembled on 2006-10-10
> BO11283.complete
GAAGTTATCAGTCGACATGACCCACACATACAACGTATATTCTCACATTG
CCATTTTCATTTCAATTCATTTCATTTATTTATGCAATATTTTATGTGCT
CATTCATTTTTTGCCCGTTCCGTTGTCGTCGGTGTGCCCGATTGTTCTAT
TAATTTGTTGTCGCTCCTCGTTCGGGCTCCTCGTGGTCTCCGTACCATCC
AGCCCATCCAGTCCATCCAAGCCATCCTGGTCGGTGGCGTTTTGGCCCGG
TTATTTGCCATCCGCCTCGGTTCGGTTCCATTGTCAATTTGTTGGATACA
CGTCTATTTGTACCTAGTATTGTATGCGCATAAAATTCGTGCCATAAACC
CCATTCGTCTTAATTTGTATGACTGTTTTGTTACGGTTACGGTTAGGCTC
TGTGTTTTGTGTTCTGTATTTTGTGCAAGCTTTCTAGACCAT
BO11283.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 15:44:58 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 15:44:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21328585..21328993 | 424..16 | 2045 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 1063..1115 | 232..179 | 141 | 75.9 | Minus |
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1986..2010 | 401..425 | 107 | 92 | Plus |
BO11283.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 21:50:37 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:50 Download gff for
BO11283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21328582..21328992 | 17..426 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:50 Download gff for
BO11283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21328582..21328992 | 17..426 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:33 Download gff for
BO11283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17154304..17154714 | 17..426 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:33 Download gff for
BO11283.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17154304..17154714 | 17..426 | 99 | | Minus |
BO11283.pep Sequence
Translation from 16 to 442
> BO11283.pep
MTHTYNVYSHIAIFISIHFIYLCNILCAHSFFARSVVVGVPDCSINLLSL
LVRAPRGLRTIQPIQSIQAILVGGVLARLFAIRLGSVPLSICWIHVYLYL
VLYAHKIRAINPIRLNLYDCFVTVTVRLCVLCSVFCASFLDH
Sequence BO11283.pep has no blast hits.