Clone BO11283 Report

Search the DGRC for BO11283

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:83
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO11283.pep:
Sequenced Size:442

Clone Sequence Records

BO11283.3prime Sequence

440 bp (439 high quality bases) assembled on 2006-04-19

> BO11283.3prime
ATGGTCTAGAAAGCTTGCACAAAATACAGAACACAAAACACAGAGCCTAA
CCGTAACCGTAACAAAACAGTCATACAAATTAAGACGAATGGGGTTTATG
GCACGAATTTTATGCGCATACAATACTAGGTACAAATAGACGTGTATCCA
ACAAATTGACAATGGAACCGAACCGAGGCGGATGGCAAATAACCGGGCCA
AAACGCCACCGACCAGGATGGCTTGGATGGACTGGATGGGCTGGATGGTA
CGGAGACCACGAGGAGCCCGAACGAGGAGCGACAACAAATTAATAGAACA
ATCGGGCACACCGACGACAACGGAACGGGCAAAAAATGAATGAGCACATA
AAATATTGCATAAATAAATGAAATGAATTGAAATGAAAATGGCAATGTGA
GAATATACGTTGTATGTGTGGGTCATGTCGACTGATAACT

BO11283.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:20:38 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 10:20:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21328585..21328993 19..427 2045 100 Plus
Blast to na_te.dros performed 2015-02-11 10:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1A 1757 Dnet\R1A NEOR1A 1757bp 1063..1115 211..264 141 75.9 Plus
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 1986..2010 42..18 107 92 Minus

BO11283.3prime Sim4 Records

Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:16 Download gff for BO11283.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21328577..21328993 11..427 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:16 Download gff for BO11283.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21328577..21328993 11..427 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:34:45 Download gff for BO11283.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17154299..17154715 11..427 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:34:45 Download gff for BO11283.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17154299..17154715 11..427 99   Plus

BO11283.5prime Sequence

440 bp (439 high quality bases) assembled on 2006-04-19

> BO11283.5prime
GAAGTTATCAGTCGACATGACCCACACATACAACGTATATTCTCACATTG
CCATTTTCATTTCAATTCATTTCATTTATTTATGCAATATTTTATGTGCT
CATTCATTTTTTGCCCGTTCCGTTGTCGTCGGTGTGCCCGATTGTTCTAT
TAATTTGTTGTCGCTCCTCGTTCGGGCTCCTCGTGGTCTCCGTACCATCC
AGCCCATCCAGTCCATCCAAGCCATCCTGGTCGGTGGCGTTTTGGCCCGG
TTATTTGCCATCCGCCTCGGTTCGGTTCCATTGTCAATTTGTTGGATACA
CGTCTATTTGTACCTAGTATTGTATGCGCATAAAATTCGTGCCATAAACC
CCATTCGTCTTAATTTGTATGACTGTTTTGTTACGGTTACGGTTAGGCTC
TGTGTTTTGTGTTCTGTATTTTGTGCAAGCTTTCTAGACC

BO11283.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 14:20:39 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 01:07:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21328585..21328993 424..16 2045 100 Minus
Blast to na_te.dros performed 2015-02-13 01:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1A 1757 Dnet\R1A NEOR1A 1757bp 1063..1115 232..179 141 75.9 Minus
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 1986..2010 401..425 107 92 Plus

BO11283.5prime Sim4 Records

Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:25 Download gff for BO11283.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21328577..21328993 16..432 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:25 Download gff for BO11283.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21328577..21328993 16..432 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:06:13 Download gff for BO11283.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17154299..17154715 16..432 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:06:13 Download gff for BO11283.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17154299..17154715 16..432 99   Minus

BO11283.complete Sequence

442 bp assembled on 2006-10-10

> BO11283.complete
GAAGTTATCAGTCGACATGACCCACACATACAACGTATATTCTCACATTG
CCATTTTCATTTCAATTCATTTCATTTATTTATGCAATATTTTATGTGCT
CATTCATTTTTTGCCCGTTCCGTTGTCGTCGGTGTGCCCGATTGTTCTAT
TAATTTGTTGTCGCTCCTCGTTCGGGCTCCTCGTGGTCTCCGTACCATCC
AGCCCATCCAGTCCATCCAAGCCATCCTGGTCGGTGGCGTTTTGGCCCGG
TTATTTGCCATCCGCCTCGGTTCGGTTCCATTGTCAATTTGTTGGATACA
CGTCTATTTGTACCTAGTATTGTATGCGCATAAAATTCGTGCCATAAACC
CCATTCGTCTTAATTTGTATGACTGTTTTGTTACGGTTACGGTTAGGCTC
TGTGTTTTGTGTTCTGTATTTTGTGCAAGCTTTCTAGACCAT

BO11283.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 15:44:58 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 15:44:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21328585..21328993 424..16 2045 100 Minus
Blast to na_te.dros performed 2014-11-26 15:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1A 1757 Dnet\R1A NEOR1A 1757bp 1063..1115 232..179 141 75.9 Minus
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 1986..2010 401..425 107 92 Plus

BO11283.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 21:50:37 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:50 Download gff for BO11283.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21328582..21328992 17..426 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:50 Download gff for BO11283.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21328582..21328992 17..426 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:33 Download gff for BO11283.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17154304..17154714 17..426 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:33 Download gff for BO11283.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17154304..17154714 17..426 99   Minus

BO11283.pep Sequence

Translation from 16 to 442

> BO11283.pep
MTHTYNVYSHIAIFISIHFIYLCNILCAHSFFARSVVVGVPDCSINLLSL
LVRAPRGLRTIQPIQSIQAILVGGVLARLFAIRLGSVPLSICWIHVYLYL
VLYAHKIRAINPIRLNLYDCFVTVTVRLCVLCSVFCASFLDH
Sequence BO11283.pep has no blast hits.