Clone Sequence Records
BO11287.3prime Sequence
786 bp (754 high quality bases) assembled on 2006-04-19
> BO11287.3prime
ATGGTCTAGAAAGCTTGCTACAAATGAGCCCAGTAGTCGCTTCAAAATTG
ACCACAATATTAGGGCAGCACCGCCACAAAGAGTGAACTGCAGCAGCCGA
TGAAGAAATTCAAACCTTTTATAGATCTTTCGTCCCCTTTCCACTACCTC
CTGTCCTGGTTCCTCCTTGGCGAGATAGATGCGAACTCCGGCCAGTGCCT
GTAGGAAGTAATCATCCCAGTCGACGCTGCTCATATTAAAATCGTAAAGC
TTTTGATCCTCGACAGACATTTTGGCCCACAACTTGCGGGTGTTGACGGT
ATCGAACGACCAGGATGTGATCACAAAGGGTGCCAGAATATCAATGTTCT
TGTGGATCTTGTCGTACAACTTGATCATACGTGGCTTTTTGCCCCATAAA
CGCAAGGCCAGATCAATGGCATAGCCGGGGAGCAGGTGATAAAAGATGGC
CGTGAACCGGAATAGCCAGGGAATGGTGGTGCAATGCAGAAACGGCAACC
ACATCATCTTGGTCAGTGGATACGTGTACCGCAGCCTCGCCGCCTTGTCC
CGAAATCCACCCCAGGTTATCAGGTTATCATTATTTGGCGTAAAATTGTA
GATAGGTGGCTCCGGCGATAGCTTGATACTTGTATCCCGGGCCGTGTTCC
AAGCGCAGGTCAGCACCATATTGACGCAGTAATCCACGGGTACAATTCCA
GCCTGGGCCTTAAGATTAAGCAGTGTGATATGCAGTATTCCGAAGGCTGC
TCCGTAGAGAACTGCAATGGGTCCGTACAGGTTGTC
BO11287.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-PA | 1356 | CG10096-RA | 586..1353 | 786..19 | 3840 | 100 | Minus |
| CG10096-PB | 1509 | CG10096-RB | 739..1506 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10097-RC | 4716 | CG10097-RC | 3723..4490 | 786..19 | 3840 | 100 | Minus |
| CG10097-RD | 5233 | CG10097-RD | 3723..4490 | 786..19 | 3840 | 100 | Minus |
| CG10096-RD | 2358 | CG10096-RD | 848..1615 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391082..12391754 | 114..786 | 3365 | 100 | Plus |
| 3R | 32079331 | 3R | 12390909..12391007 | 19..117 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:24:58 has no hits.
BO11287.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:08 Download gff for
BO11287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-PB | 739..1509 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:36 Download gff for
BO11287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-PB | 739..1509 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:26:54 Download gff for
BO11287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RA | 3943..4713 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:26 Download gff for
BO11287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RD | 848..1618 | 15..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:26 Download gff for
BO11287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12390906..12391005 | 15..115 | 98 | <- | Plus |
| 3R | 12391084..12391754 | 116..786 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:26:54 Download gff for
BO11287.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8216628..8216727 | 15..115 | 98 | <- | Plus |
| arm_3R | 8216806..8217476 | 116..786 | 100 | | Plus |
BO11287.5prime Sequence
777 bp (675 high quality bases) assembled on 2006-04-19
> BO11287.5prime
GAAGTTATCAGTCGACATGCGGGAGCGATGCGCCGCATGGGATAAGGATC
CGGTATTCGGTAATCTAATGAAAACAAATCCCGAGGCTCTGAAGCGCGTG
GTACCTTGTGGTGGCGATTGCCAGGAGCCGGATCTTGGCCTGAGCAACAG
CGATCGTCAGGTTTTGATAGATGAGGTGCAGATTGTTATCCACACGGCGG
CCACTGTGCGTTTTGTGGAGCCGCTGCACATCGCCCTGGCTGTTAACACC
CGAGCCACCCGACTCATGATTCAACTGGCCAAGGAGATGTCCCACTTGGA
GTCCTTTGTCCATGTGTCCACCGCGTACTCAAACTGCGTGGTGGAGCACG
TAAGTGAACGCTTCTATCCGGAGCACTTGACCTGCCCTGCCGAAAAGATC
CTAGAGCTGCTGGAAAGCATAAGTCCTGAGCTATTGGATAAAATGGCACC
GGCGCTGATGGGCAAGTATCCCAATACGTATACGTATACCAAGGCTCTGA
CGGAGCAGGTGATCCAGAAGGAGGCGAAAGATTTGCCGCTTAGCATTTTT
CGTCCGGGTGTCATAATTGCCAGCTATAAGGAGCCCATGCCCGGCTGGAT
CGACAACCTGTACGGACCCATTGCAGTTCTCTACGGAGCAGCCTTCGGAA
TACTGCATATCACACTGCTTAATCTTAAAGCCCAGGCTGGAATTGTACCC
GTGGATTACTGCGTCAATATGGTGCTGACCTGCGCTTGGAACACGGCCCG
GGATACAAGTATCAAGCTATCGCCGGA
BO11287.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-PA | 1356 | CG10096-RA | 1..761 | 17..777 | 3780 | 99.8 | Plus |
| CG10096-PB | 1509 | CG10096-RB | 154..914 | 17..777 | 3780 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10097-RC | 4716 | CG10097-RC | 3138..3898 | 17..777 | 3790 | 99.9 | Plus |
| CG10097-RD | 5233 | CG10097-RD | 3138..3898 | 17..777 | 3790 | 99.9 | Plus |
| CG10096-RD | 2358 | CG10096-RD | 263..1023 | 17..777 | 3790 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391848..12392359 | 563..52 | 2560 | 100 | Minus |
| 3R | 32079331 | 3R | 12391579..12391792 | 777..564 | 1055 | 99.5 | Minus |
| 3R | 32079331 | 3R | 16618397..16618628 | 173..404 | 305 | 75.4 | Plus |
| 3R | 32079331 | 3R | 16615774..16615940 | 173..339 | 250 | 76.6 | Plus |
| 2L | 23513712 | 2L | 8520272..8520553 | 243..524 | 240 | 72.3 | Plus |
| 3R | 32079331 | 3R | 12392456..12392494 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:30:14 has no hits.
BO11287.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:09 Download gff for
BO11287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-PB | 148..913 | 9..776 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:38 Download gff for
BO11287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-PB | 148..913 | 9..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:30:02 Download gff for
BO11287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RA | 3352..4117 | 9..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:55 Download gff for
BO11287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RD | 257..1022 | 9..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:55 Download gff for
BO11287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12391580..12391792 | 564..776 | 99 | <- | Minus |
| 3R | 12391848..12392358 | 53..563 | 100 | <- | Minus |
| 3R | 12392459..12392500 | 9..52 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:30:02 Download gff for
BO11287.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8217302..8217514 | 564..776 | 99 | <- | Minus |
| arm_3R | 8217570..8218080 | 53..563 | 100 | <- | Minus |
| arm_3R | 8218181..8218222 | 9..52 | 93 | | Minus |
BO11287.complete Sequence
1387 bp assembled on 2006-10-10
GenBank Submission: FJ632058
> BO11287.complete
GAAGTTATCAGTCGACATGCGGGAGCGATGCGCCGCATGGGATAAGGATC
CGGTATTCGGTAATCTAATGAAAACAAATCCCGAGGCTCTGAAGCGCGTG
GTACCTTGTGGTGGCGATTGCCAGGAGCCGGATCTTGGCCTGAGCAACAG
CGATCGTCAGGTTTTGATAGATGAGGTGCAGATTGTTATCCACACGGCGG
CCACTGTGCGTTTTGTGGAGCCGCTGCACATCGCCCTGGCTGTTAACACC
CGAGCCACCCGACTCATGATTCAACTGGCCAAGGAGATGTCCCACTTGGA
GTCCTTTGTCCATGTGTCCACCGCGTACTCAAACTGCGTGGTGGAGCACG
TAAGTGAACGCTTCTATCCGGAGCACTTGACCTGCCCTGCCGAAAAGATC
CTAGAGCTGCTGGAAAGCATAAGTCCTGAGCTATTGGATAAAATGGCACC
GGCGCTGATGGGCAAGTATCCCAATACGTATACGTATACCAAGGCTCTGA
CGGAGCAGGTGATCCAGAAGGAGGCGAAAGATTTGCCGCTTAGCATTTTT
CGTCCGGGTGTCATAATTGCCAGCTATAAGGAGCCCATGCCCGGCTGGAT
CGACAACCTGTACGGACCCATTGCAGTTCTCTACGGAGCAGCCTTCGGAA
TACTGCATATCACACTGCTTAATCTTAAGGCCCAGGCTGGAATTGTACCC
GTGGATTACTGCGTCAATATGGTGCTGACCTGCGCTTGGAACACGGCCCG
GGATACAAGTATCAAGCTATCGCCGGAGCCACCTATCTACAATTTTACGC
CAAATAATGATAACCTGATAACCTGGGGTGGATTTCGGGACAAGGCGGCG
AGGCTGCGGTACACGTATCCACTGACCAAGATGATGTGGTTGCCGTTTCT
GCATTGCACCACCATTCCCTGGCTATTCCGGTTCACGGCCATCTTTTATC
ACCTGCTCCCCGGCTATGCCATTGATCTGGCCTTGCGTTTATGGGGCAAA
AAGCCACGTATGATCAAGTTGTACGACAAGATCCACAAGAACATTGATAT
TCTGGCACCCTTTGTGATCACATCCTGGTCGTTCGATACCGTCAACACCC
GCAAGTTGTGGGCCAAAATGTCTGTCGAGGATCAAAAGCTTTACGATTTT
AATATGAGCAGCGTCGACTGGGATGATTACTTCCTACAGGCACTGGCCGG
AGTTCGCATCTATCTCGCCAAGGAGGAACCAGGACAGGAGGTAGTGGAAA
GGGGACGAAAGATCTATAAAAGGTTTGAATTTCTTCATCGGCTGCTGCAG
TTCACTCTTTGTGGCGGTGCTGCCCTAATATTGTGGTCAATTTTGAAGCG
ACTACTGGGCTCATTTGTAGCAAGCTTTCTAGACCAT
BO11287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-RD | 1509 | CG10096-PD | 154..1506 | 17..1369 | 6765 | 100 | Plus |
| CG10096-RC | 1356 | CG10096-PC | 1..1353 | 17..1369 | 6765 | 100 | Plus |
| CG10096-RB | 1509 | CG10096-PB | 154..1506 | 17..1369 | 6765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10097-RC | 4716 | CG10097-RC | 3138..4490 | 17..1369 | 6765 | 100 | Plus |
| CG10097-RD | 5233 | CG10097-RD | 3138..4490 | 17..1369 | 6765 | 100 | Plus |
| CG10096-RD | 2358 | CG10096-RD | 263..1615 | 17..1369 | 6765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391082..12391792 | 1274..564 | 3555 | 100 | Minus |
| 3R | 32079331 | 3R | 12391848..12392359 | 563..52 | 2560 | 100 | Minus |
| 3R | 32079331 | 3R | 12390909..12391007 | 1369..1271 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 16618397..16618628 | 173..404 | 305 | 75.4 | Plus |
| 3R | 32079331 | 3R | 16615774..16615940 | 173..339 | 250 | 76.6 | Plus |
| 2L | 23513712 | 2L | 8520272..8520553 | 243..524 | 240 | 72.3 | Plus |
| 3R | 32079331 | 3R | 12392456..12392494 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:39:36 has no hits.
BO11287.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:26 Download gff for
BO11287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 148..1509 | 9..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:36 Download gff for
BO11287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10097-RA | 3256..4617 | 9..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:45 Download gff for
BO11287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RA | 3358..4710 | 17..1371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:27 Download gff for
BO11287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 257..1618 | 9..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:36 Download gff for
BO11287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RD | 263..1615 | 17..1371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:36 Download gff for
BO11287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12390907..12391005 | 1273..1371 | 97 | <- | Minus |
| 3R | 12391084..12391792 | 564..1272 | 100 | <- | Minus |
| 3R | 12391848..12392358 | 53..563 | 100 | <- | Minus |
| 3R | 12392459..12392494 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:45 Download gff for
BO11287.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8216629..8216727 | 1273..1371 | 97 | <- | Minus |
| arm_3R | 8216806..8217514 | 564..1272 | 100 | <- | Minus |
| arm_3R | 8217570..8218080 | 53..563 | 100 | <- | Minus |
| arm_3R | 8218181..8218216 | 17..52 | 100 | | Minus |
BO11287.pep Sequence
Translation from 16 to 1387
> BO11287.pep
MRERCAAWDKDPVFGNLMKTNPEALKRVVPCGGDCQEPDLGLSNSDRQVL
IDEVQIVIHTAATVRFVEPLHIALAVNTRATRLMIQLAKEMSHLESFVHV
STAYSNCVVEHVSERFYPEHLTCPAEKILELLESISPELLDKMAPALMGK
YPNTYTYTKALTEQVIQKEAKDLPLSIFRPGVIIASYKEPMPGWIDNLYG
PIAVLYGAAFGILHITLLNLKAQAGIVPVDYCVNMVLTCAWNTARDTSIK
LSPEPPIYNFTPNNDNLITWGGFRDKAARLRYTYPLTKMMWLPFLHCTTI
PWLFRFTAIFYHLLPGYAIDLALRLWGKKPRMIKLYDKIHKNIDILAPFV
ITSWSFDTVNTRKLWAKMSVEDQKLYDFNMSSVDWDDYFLQALAGVRIYL
AKEEPGQEVVERGRKIYKRFEFLHRLLQFTLCGGAALILWSILKRLLGSF
VASFLDH
BO11287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-PD | 502 | CG10096-PD | 52..502 | 1..451 | 2392 | 100 | Plus |
| CG10096-PC | 451 | CG10096-PC | 1..451 | 1..451 | 2392 | 100 | Plus |
| CG10096-PB | 502 | CG10096-PB | 52..502 | 1..451 | 2392 | 100 | Plus |
| CG10096-PA | 451 | CG10096-PA | 1..451 | 1..451 | 2392 | 100 | Plus |
| CG17562-PA | 499 | CG17562-PA | 52..499 | 1..447 | 1304 | 54.9 | Plus |
