Clone Sequence Records
BO11290.3prime Sequence
781 bp (741 high quality bases) assembled on 2006-04-19
> BO11290.3prime
ATGGTCTAGAAAGCTTGCCAAATCGGTGATCTCATGATGAGATTCGTATG
CGACGGATGCCCCGCCGCCGATATTCGACATCCTGCCGGTCTGATCCTCG
CTGCTGATGCTGATCCGCGTGAGCAGCTCGGTCTGGATGCGCTTCAGCAC
CTCGACCACTTCGCAGAGCACACCGCTTTGGGCGGCCTGCTGCATCGCCT
CATTGGCGTCCACAAGTGCTTCATTCAATGCACCAAGTTCCATGCGCGCC
TTTGCCCTGGCGTAGTATCCTTCGTAGCTGTGCGGCTTCTGGGCAATCGC
TTGCGTGGCCAAATCTATGGAGGCGTCAAGTTCATTCAGTTTTCGCTTGC
AGCGCGACAGATTCAGCAGAAGATTGGTCCGCAGCTGGGCGAAGATGGCA
TTCCTTTCGAGCAACTGCTCCAGTCCGGAGATCTTGCGTAGGGCATACTG
ATAGCGATGAGCAGCCTCCTGGAAGCGGTTTTTCCGGTACAGCACATTAC
CGTCCTCGAGCAGCTTGTTCAGTAGTATGACCAGAATCTCCGGCTTGCCC
ATGGCCATGCTCCAAGTGGTCGGTCCCAGTTTGGCCCCCTTGCGCAGGAA
CACCTGTACGGCCTGGATGTTACGGCAGGCAATGGCCCGATCCAGGGGAC
GCATTCCATGAACATCAATGTGTTCCAGATTGCCGCCCTGCTCCAGGATA
TAGATCACCAGGCTAGCGGCTCCCTGATAGGCTGCCAGATCCAGGGCTGT
GCGTCCATTGTGATCCTCGTGGTGGCGATTA
BO11290.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32096-PB | 5703 | rols-RB | 4938..5700 | 781..19 | 3815 | 100 | Minus |
| CG32096-PD | 4710 | rols-RD | 3945..4707 | 781..19 | 3815 | 100 | Minus |
| CG32096-PE | 5013 | rols-RE | 4248..5010 | 781..19 | 3815 | 100 | Minus |
| CG32096-PA | 4710 | rols-RA | 3945..4707 | 781..19 | 3815 | 100 | Minus |
| CG32096-PC | 5013 | rols-RC | 4248..5010 | 781..19 | 3815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rols-RI | 5969 | CG32096-RI | 4931..5693 | 781..19 | 3815 | 100 | Minus |
| rols-RH | 5502 | CG32096-RH | 4464..5226 | 781..19 | 3815 | 100 | Minus |
| rols-RG | 5972 | CG32096-RG | 4934..5696 | 781..19 | 3815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12008878..12009326 | 333..781 | 2245 | 100 | Plus |
| 3L | 28110227 | 3L | 12008501..12008815 | 19..333 | 1575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:21:01 has no hits.
BO11290.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:10 Download gff for
BO11290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-PE | 4249..5013 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:39 Download gff for
BO11290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32096-PC | 4249..5013 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:34:46 Download gff for
BO11290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-RG | 4935..5699 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:18 Download gff for
BO11290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-RG | 4935..5699 | 15..780 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:18 Download gff for
BO11290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12008497..12008815 | 15..333 | 99 | <- | Plus |
| 3L | 12008879..12009325 | 334..780 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:34:46 Download gff for
BO11290.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12001597..12001915 | 15..333 | 99 | <- | Plus |
| arm_3L | 12001979..12002425 | 334..780 | 100 | | Plus |
BO11290.5prime Sequence
836 bp (662 high quality bases) assembled on 2006-04-19
> BO11290.5prime
GAAGTTATCAGTCGACATGTTCCCACTAACCAACCGCTCTTCGAGTGGCA
ATCGCACCAACAACAATCCGAGCAACAACAACAACAACCAGACCACAAGC
TTCATAATCGGAGGTACCACCAATATTAACAACAACAACAATCAGCTTGG
TGGCACAAACAGCGCTAAGGATAAAGGAAATTTTGAAAATAATTGGAGCT
GCAATAAAACAACCGGTCGTCGATCTGGCAGTGGAAATAGTTGCAGTTTT
TTAGATCTCCAGTCCATCCGACGACTCCTGGAGCACGATGCCAGTGGATC
CGTTTGCCCCTCCTGCCGCATATCCTTCGACAAGGGCAAGAGACGGAAAC
TGATCGACACCTGCGGCCACGAGCGGTGCTATTCCTGCATGTTCCGCAAC
GACCAGTGCCCCATGTGCATGAACAGCTCGCTGAAAGATGTTGATGGCGC
CAATGCTCAGGGCTATGACACCGGAATCGGTGGCTCCACATCGACGATAG
TGAGTCCTCTTGGATCCCCGCAGCCGCAGCTCAGATCGCATGCGCAACGA
AACGCAGCGCTGGCGCGCTACATGCAGCAGCACCGCCAGGAGTCGCAGTC
GCCAGATTACCACCATCGCTATGCGAGCAATGGCAAACTGCCCCGGGCGG
CGGCACTGTCTACCAATGGCAATGGATTTACCACCGGCACCACGCAAACG
GTCACAGTGGATGTGCATCACCAGCTCGGCGGAGGAGGAGGAGGTGCTGC
CGCCGCGGCCAAAGCAGTGATGGCCAACGGCATCAGTGGCCATAGTCGCA
GCAGCAGCATGAGCCACAACATCCATGCGGCAGCCT
BO11290.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32096-PD | 4710 | rols-RD | 1..746 | 17..762 | 3730 | 100 | Plus |
| CG32096-PE | 5013 | rols-RE | 1..746 | 17..762 | 3730 | 100 | Plus |
| CG32096-PA | 4710 | rols-RA | 1..746 | 17..762 | 3730 | 100 | Plus |
| CG32096-PC | 5013 | rols-RC | 1..746 | 17..762 | 3730 | 100 | Plus |
| CG32096-PB | 5703 | rols-RB | 928..1436 | 254..762 | 2545 | 100 | Plus |
| CG32096-PD | 4710 | rols-RD | 752..820 | 768..836 | 345 | 100 | Plus |
| CG32096-PE | 5013 | rols-RE | 752..820 | 768..836 | 345 | 100 | Plus |
| CG32096-PA | 4710 | rols-RA | 752..820 | 768..836 | 345 | 100 | Plus |
| CG32096-PC | 5013 | rols-RC | 752..820 | 768..836 | 345 | 100 | Plus |
| CG32096-PB | 5703 | rols-RB | 1442..1510 | 768..836 | 345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rols-RC | 5832 | CG32096-RC | 546..1366 | 16..836 | 4060 | 99.8 | Plus |
| rols-RA | 5505 | CG32096-RA | 522..1342 | 16..836 | 4060 | 99.8 | Plus |
| rols-RE | 5849 | CG32096-RE | 563..1383 | 16..836 | 4060 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12013150..12013413 | 836..573 | 1245 | 98.1 | Minus |
| 3L | 28110227 | 3L | 12055194..12055432 | 254..16 | 1195 | 100 | Minus |
| 3L | 28110227 | 3L | 12028696..12028880 | 437..253 | 925 | 100 | Minus |
| 3L | 28110227 | 3L | 12027022..12027163 | 577..436 | 710 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 15:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2475 | 54..213 | 180 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2432 | 24..141 | 146 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2492 | 49..141 | 139 | 65 | Plus |
| Tc1 | 1666 | Tc1 TC1 1666bp | 1439..1517 | 251..172 | 127 | 65.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2910..2989 | 61..140 | 121 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6833 | 715..823 | 116 | 58.7 | Plus |
BO11290.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:11 Download gff for
BO11290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-PD | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:40 Download gff for
BO11290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32096-PA | 1..820 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:05:12 Download gff for
BO11290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-RE | 552..1383 | 2..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:45 Download gff for
BO11290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-RE | 552..1383 | 2..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:45 Download gff for
BO11290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12013150..12013408 | 578..836 | 99 | <- | Minus |
| 3L | 12027022..12027161 | 438..577 | 100 | <- | Minus |
| 3L | 12028696..12028878 | 255..437 | 100 | <- | Minus |
| 3L | 12055194..12055434 | 14..254 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:05:12 Download gff for
BO11290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12006250..12006508 | 578..836 | 99 | <- | Minus |
| arm_3L | 12020122..12020261 | 438..577 | 100 | <- | Minus |
| arm_3L | 12021796..12021978 | 255..437 | 100 | <- | Minus |
| arm_3L | 12048294..12048534 | 14..254 | 99 | <- | Minus |
BO11290.complete Sequence
4741 bp assembled on 2008-08-15
GenBank Submission: FJ632059
> BO11290.complete
GAAGTTATCAGTCGACATGTTCCCACTAACCAACCGCTCTTCGAGTGGCA
ATCGCACCAACAACAATCCGAGCAACAACAACAACAACCAGACCACAAGC
TTCATAATCGGAGGTACCACCAATATTAACAACAACAACAATCAGCTTGG
TGGCACAAACAGCGCTAAGGATAAAGGAAATTTTGAAAATAATTGGAGCT
GCAATAAAACAACCGGTCGTCGATCTGGCAGTGGAAATAGTTGCAGTTTT
TTAGATCTCCAGTCCATCCGACGACTCCTGGAGCACGATGCCAGTGGATC
CGTTTGCCCCTCCTGCCGCATATCCTTCGACAAGGGCAAGAGACGGAAAC
TGATCGACACCTGCGGCCACGAGCGGTGCTATTCCTGCATGTTCCGCAAC
GACCAGTGCCCCATGTGCATGAACAGCTCGCTGAAAGATGTTGATGGCGC
CAATGCTCAGGGCTATGACACCGGAATCGGTGGCTCCACATCGACGATAG
TGAGTCCTCTTGGATCCCCGCAGCCGCAGCTCAGATCGCATGCGCAACGA
AACGCAGCGCTGGCGCGCTACATGCAGCAGCACCGCCAGGAGTCGCAGTC
GCCAGATTACCACCATCGCTATGCGAGCAATGGCAAACTGCCCCGGGCGG
CGGCACTGTCTACCAATGGCAATGGATTTACCACCGGCACCACGCAAACG
GTCACAGTGGATGTGCATCACCAGCTCGGCGGAGGAGGAGGAGGTGCTGC
CGCCGCGGCCAAGCAGTTGATGGCCAACGGCATCAGTGGCCATAGTCGCA
GCAGCAGCATGAGCCACAACATCCATGCGGCAGCCTACAGCGAACTGAGT
GCCGCACCACCGGCCTTCGCCACACCGCCGACGCGTAGGCGGTTCTTTAA
CCACAAGAATCTGCGCAGTGCCCTCACTGGAGGAAGTGGCGGTGGATCGG
GAGTCGGCGGTGGTGTAGGAGGAGCTGGCGGTGTGGGCGGCGGTCATCGA
CGCACTGCCTCCAATGGGGGTTGTCCCATTGACACAGCATCGATCCTGTC
GGGAGGAAGCGACGCTATTGACCACCACTCCTCCTTCCTGAATGAGAAAC
TGCAGAAGGATCAGCTCCACGCCCGTCTCGGTCTGCTGCTCAACGATCCC
GGCAGCAATGGAAACAGCAGCAGCAGCGGAAGTGGTTGTGAACCCATCTC
GGCCCATTCCACCACCAGCACCACGAGCAGCAGCGGCGTGGGAGCGGCCA
GCACCACCACGAGCGGTTCCTCGCAGAATGTCAGTCCGGAGCAAACGCTG
GCCAGCGGAGCCGGAATGCTCAGTGGCAGTCAGCTGTCGGTGGCCACCAG
TCATGGGGTCAAGGAGGATGCACTGAGTCTGTGCGGCAAGTTCAAGGCTG
GCTGCTCCATGCTGCACGTCTACGAAGCATTGCCCAGCAAGAGTCGCAAA
GGAAATGTACGGAGATCGACGCGTGGTCAGCAGGGATCCAGTTCGAGCGC
ATCGGCGGCATCAGCAGTGGGATCCAGGGTGACAGCCTCCAGTTTGGCGG
CTGTGCAGTTGGCCCTGAAGCCACTGTTCTTTGAGGTGCCGCTGCAGGAA
CCGGATCCACCATATGTGGGTCGCCAGTGGCTGGTGCAGCAGTTGTCCAA
CATCCTGCTTGGCACCGAGACACGGGTGGTGCTCATTAACGGACAGCCGG
GCACTGGAAAGACGGCGTTTTGTCTGCAGCTGGTGGAGTACTCCTGCTTT
GGCCGCCGGCAGATGCAGGATGATCCCGATGGCATATACAGTCAGCTACA
GTTGGGCGCCCACTGTGAGCGCATGCGCGGACTGGCCTCCCACATGGTTG
GCTATCACTTCTGCCAGGCGGACGCCAATCTCACCTGCCAGGTGCCCGAT
TTCGTGCATTCTCTGGCCGCCCAACTGTGTCAGGCGCCGCAGTTAACCGC
CTACAGGGATTACCTGCTCTCGGAGCCGCATCTTCAGGACATTCTCAGTG
TGCGAGAGTGCATCGCGGATGCGGAGAGAGTAATGAAGCTGGCTATACTG
GAACCACTGGCTCACCTTCACCGGGCGGGAAAGATACCCGCCAAAGTGGC
CGTCATCGTGGTGGATGCCTTGTGCGAAGCGGAGTACCATCGTCCCGATC
ATGGTCACACCATTGCTAGTTTCTTGGCACAGCTTACGCCACATTTTCCA
GCTTGGCTCAAGCTGGTGGCCACTGTGAGGACCCAGATGTTGGAGCTGGT
GAAGGCACCCAGCTACACACAACTTACCCTGGACAGTTGGGCCAGCAGCC
AGGCGTTGCAGCAGGATATGCTTGATTACATAGGCGCTCGGCTTGCAGAT
AGTCCGGAAATTCGAATGAACATCGGCGGCGGAGGAGGCCAGAACTCGCA
GTCGGGCAGCCAGCCGCAGACGAAGTTCGTGTCCCATCTTCAGTCCCTGA
GCAGGGGCTCCATGCTGTACGCTAAGCTCATCCTGGATCTCATTGCACGC
GGCCAGTTGGTTATCAAGTCATCCAGCTACAAGGTGCTGCCGGTCTCTCT
TGCTCAGATCTTTCTGCTGCACTTCAACCTGCGCTTTCCCACCGCCCGTA
GCTTTGAGCAGGCTGCTCCGATCCTCAATATATGCCTGGCTGCTCTGTAT
CCTCTGACGCTGGACGAGATCTACTACAGTATGGAGGCACTGAGTCACGG
ACGGGAGGCACTAAGCTGGCCGGACTTCATGCAACGCTTTAAGCTGCTGG
ATGGATTTTTAATCAAGAGGTTGGACAACACGTACATGTTCTTTCATAGC
TCCTTGAGGGAGTGGCTCATGCGAAGGGATGAGGGGGAGTCCAACAAGTT
CCTCTGCGACGCCCGTTTGGGTCATGCTGGAATCGCTTTCCGATTATCCC
GACTGCAGGCTCCATTGTCACCTCAGCTCACATTGGAACTGGGTCACCAC
ATGCTGAAAGCACATTTATACGGAGGAACTAGTCTGACGCTGCTTTCTCC
GCGGGATTTGCAATCTTATTGGTTGGCGGGAGCGGCGGATAACATTTCAT
CCTCGCTGGGCGCCCTGCGAAATGTCTACAGTCCGAACCTAAAGGTTTCC
CGACTAGTTCTCTTGGCAGGAGCTTCACCGAATCACCGCACGGATTACAT
GGGTGGAGCTCCGATCCTTTGCATAGCTGCGCATGAGGGAATCCTTCCCA
TGGTTAGCCTGCTCCTAGAATTCGGTGCCGATGTCGGTCTGACCAACAGC
CAGGGCTGTACTCCATTAATACTGGCCGCCATGCGTGGCCACTGCGACGT
AGTGCGTCCATTGGTAGCCGCCGGCAGCAGCCTCGGTCAGTTGGACATCA
CGCAGCGCTGTGCCCTAGTTCATGCCGCCCGCATGGGTCACCTCAGTGTG
GTCAAGTACTTGCTCGCCTGCGACTGGTCACCACGACCGCACTCCCAAGA
TGTCACCAGATCGGTTGCCTTGCAACAGGCGCTCATTGGAGCTGCCGCAC
AGGCGCACTGCAAGATCCTTGAGGATCTTCTGGATCTCAATGAGACCGAG
TTTGACCTGGACGTGAATGGCATGGAGCCAAGCAGTGGTGAACTGGCGCT
AACCGCCGCCGCACGGCACGGATGCATTGATGTTGTAGGAATCTTGCTCT
CCCGTGGCGCTCAGATCGATGCAAGAAATCGGCAGGGATACTCGGCGCTT
TGGTTGGCTGTCAAGGAGGGTCACTGGAGTGTGGTGGAGCATCTGCTGCA
ACGTGGTGCCCTGTTGGATGAACCATTGGGACAGACACGCAAGACGCCGC
TAATGATTGCGGCGGAGGAGGGACACCTGGAGCTGGTCGATCTGCTGCTG
GCGCGGGGAGCGCAACGAGAAGCTCAGGATCACGAGGGATTCACTGCACT
CAGCTGGGCCTGTTTACGTGGCCACTTGGCGGCGGCCAAGACGCTCATAG
AACATGGCTGTAATCGCCACCACGAGGATCACAATGGACGCACAGCCCTG
GATCTGGCAGCCTATCAGGGAGCCGCTAGCCTGGTGATCTATATCCTGGA
GCAGGGCGGCAATCTGGAACACATTGATGTTCATGGAATGCGTCCCCTGG
ATCGGGCCATTGCCTGCCGTAACATCCAGGCCGTACAGGTGTTCCTGCGC
AAGGGGGCCAAACTGGGACCGACCACTTGGAGCATGGCCATGGGCAAGCC
GGAGATTCTGGTCATACTACTGAACAAGCTGCTCGAGGACGGTAATGTGC
TGTACCGGAAAAACCGCTTCCAGGAGGCTGCTCATCGCTATCAGTATGCC
CTACGCAAGATCTCCGGACTGGAGCAGTTGCTCGAAAGGAATGCCATCTT
CGCCCAGCTGCGGACCAATCTTCTGCTGAATCTGTCGCGCTGCAAGCGAA
AACTGAATGAACTTGACGCCTCCATAGATTTGGCCACGCAAGCGATTGCC
CAGAAGCCGCACAGCTACGAAGGATACTACGCCAGGGCAAAGGCGCGCAT
GGAACTTGGTGCATTGAATGAAGCACTTGTGGACGCCAATGAGGCGATGC
AGCAGGCCGCCCAAAGCGGTGTGCTCTGCGAAGTGGTCGAGGTGCTGAAG
CGCATCCAGACCGAGCTGCTCACGCGGATCAGCATCAGCAGCGAGGATCA
GACCGGCAGGATGTCGAATATCGGCGGCGGGGCATCCGTCGCATACGAAT
CTCATCATGAGATCACCGATTTGGCAAGCTTTCTAGACCAT
BO11290.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rols-RA | 4710 | CG32096-PA | 1..4707 | 17..4723 | 23535 | 100 | Plus |
| rols-RD | 4710 | CG32096-PD | 1..4707 | 17..4723 | 23535 | 100 | Plus |
| rols-RH | 4707 | CG32096-PH | 1..4704 | 17..4723 | 23455 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rols-RA | 5505 | CG32096-RA | 522..5229 | 16..4723 | 23540 | 100 | Plus |
| rols-RD | 6026 | CG32096-RD | 1043..5750 | 16..4723 | 23540 | 100 | Plus |
| rols-RH | 5502 | CG32096-RH | 522..5226 | 16..4723 | 23460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12008878..12012233 | 4409..1054 | 16780 | 100 | Minus |
| 3L | 28110227 | 3L | 12012930..12013413 | 1056..573 | 2420 | 100 | Minus |
| 3L | 28110227 | 3L | 12008501..12008815 | 4723..4409 | 1575 | 100 | Minus |
| 3L | 28110227 | 3L | 12055194..12055432 | 254..16 | 1195 | 100 | Minus |
| 3L | 28110227 | 3L | 12028696..12028880 | 437..253 | 925 | 100 | Minus |
| 3L | 28110227 | 3L | 12027022..12027163 | 577..436 | 710 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2475 | 54..213 | 180 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2432 | 24..141 | 146 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2492 | 49..141 | 139 | 65 | Plus |
| Tc1 | 1666 | Tc1 TC1 1666bp | 1439..1517 | 251..172 | 127 | 65.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2910..2989 | 61..140 | 121 | 61.3 | Plus |
BO11290.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:24 Download gff for
BO11290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-RD | 1002..5723 | 2..4727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:19 Download gff for
BO11290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-RD | 1049..5750 | 22..4725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:30 Download gff for
BO11290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-RD | 1019..5720 | 22..4725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:29 Download gff for
BO11290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rols-RD | 1049..5750 | 22..4725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:29 Download gff for
BO11290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12008499..12008815 | 4409..4725 | 99 | <- | Minus |
| 3L | 12008879..12012231 | 1056..4408 | 100 | <- | Minus |
| 3L | 12012931..12013408 | 578..1055 | 100 | <- | Minus |
| 3L | 12027022..12027161 | 438..577 | 100 | <- | Minus |
| 3L | 12028696..12028878 | 255..437 | 100 | <- | Minus |
| 3L | 12055194..12055426 | 22..254 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:19 Download gff for
BO11290.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12001599..12001915 | 4409..4725 | 99 | <- | Minus |
| arm_3L | 12001979..12005331 | 1056..4408 | 100 | <- | Minus |
| arm_3L | 12006031..12006508 | 578..1055 | 100 | <- | Minus |
| arm_3L | 12020122..12020261 | 438..577 | 100 | <- | Minus |
| arm_3L | 12021796..12021978 | 255..437 | 100 | <- | Minus |
| arm_3L | 12048294..12048526 | 22..254 | 100 | | Minus |
BO11290.pep Sequence
Translation from 16 to 4741
> BO11290.pep
MFPLTNRSSSGNRTNNNPSNNNNNQTTSFIIGGTTNINNNNNQLGGTNSA
KDKGNFENNWSCNKTTGRRSGSGNSCSFLDLQSIRRLLEHDASGSVCPSC
RISFDKGKRRKLIDTCGHERCYSCMFRNDQCPMCMNSSLKDVDGANAQGY
DTGIGGSTSTIVSPLGSPQPQLRSHAQRNAALARYMQQHRQESQSPDYHH
RYASNGKLPRAAALSTNGNGFTTGTTQTVTVDVHHQLGGGGGGAAAAAKQ
LMANGISGHSRSSSMSHNIHAAAYSELSAAPPAFATPPTRRRFFNHKNLR
SALTGGSGGGSGVGGGVGGAGGVGGGHRRTASNGGCPIDTASILSGGSDA
IDHHSSFLNEKLQKDQLHARLGLLLNDPGSNGNSSSSGSGCEPISAHSTT
STTSSSGVGAASTTTSGSSQNVSPEQTLASGAGMLSGSQLSVATSHGVKE
DALSLCGKFKAGCSMLHVYEALPSKSRKGNVRRSTRGQQGSSSSASAASA
VGSRVTASSLAAVQLALKPLFFEVPLQEPDPPYVGRQWLVQQLSNILLGT
ETRVVLINGQPGTGKTAFCLQLVEYSCFGRRQMQDDPDGIYSQLQLGAHC
ERMRGLASHMVGYHFCQADANLTCQVPDFVHSLAAQLCQAPQLTAYRDYL
LSEPHLQDILSVRECIADAERVMKLAILEPLAHLHRAGKIPAKVAVIVVD
ALCEAEYHRPDHGHTIASFLAQLTPHFPAWLKLVATVRTQMLELVKAPSY
TQLTLDSWASSQALQQDMLDYIGARLADSPEIRMNIGGGGGQNSQSGSQP
QTKFVSHLQSLSRGSMLYAKLILDLIARGQLVIKSSSYKVLPVSLAQIFL
LHFNLRFPTARSFEQAAPILNICLAALYPLTLDEIYYSMEALSHGREALS
WPDFMQRFKLLDGFLIKRLDNTYMFFHSSLREWLMRRDEGESNKFLCDAR
LGHAGIAFRLSRLQAPLSPQLTLELGHHMLKAHLYGGTSLTLLSPRDLQS
YWLAGAADNISSSLGALRNVYSPNLKVSRLVLLAGASPNHRTDYMGGAPI
LCIAAHEGILPMVSLLLEFGADVGLTNSQGCTPLILAAMRGHCDVVRPLV
AAGSSLGQLDITQRCALVHAARMGHLSVVKYLLACDWSPRPHSQDVTRSV
ALQQALIGAAAQAHCKILEDLLDLNETEFDLDVNGMEPSSGELALTAAAR
HGCIDVVGILLSRGAQIDARNRQGYSALWLAVKEGHWSVVEHLLQRGALL
DEPLGQTRKTPLMIAAEEGHLELVDLLLARGAQREAQDHEGFTALSWACL
RGHLAAAKTLIEHGCNRHHEDHNGRTALDLAAYQGAASLVIYILEQGGNL
EHIDVHGMRPLDRAIACRNIQAVQVFLRKGAKLGPTTWSMAMGKPEILVI
LLNKLLEDGNVLYRKNRFQEAAHRYQYALRKISGLEQLLERNAIFAQLRT
NLLLNLSRCKRKLNELDASIDLATQAIAQKPHSYEGYYARAKARMELGAL
NEALVDANEAMQQAAQSGVLCEVVEVLKRIQTELLTRISISSEDQTGRMS
NIGGGASVAYESHHEITDLASFLDH
BO11290.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rols-PA | 1569 | CG32096-PA | 1..1569 | 1..1569 | 8105 | 100 | Plus |
| rols-PD | 1569 | CG32096-PD | 1..1569 | 1..1569 | 8105 | 100 | Plus |
| rols-PH | 1568 | CG32096-PH | 1..1568 | 1..1569 | 8088 | 99.9 | Plus |
| rols-PG | 1799 | CG32096-PG | 310..1799 | 80..1569 | 7674 | 100 | Plus |
| rols-PI | 1798 | CG32096-PI | 310..1798 | 80..1569 | 7657 | 99.9 | Plus |
