Clone Sequence Records
BO11292.3prime Sequence
728 bp (650 high quality bases) assembled on 2006-04-19
> BO11292.3prime
ATGGTCTAGAAAGCTTGCACGCCCTCGCGCCCAGCGTAGTAACGCATCCG
CTAACACATCCAGATGGGCCTTCGTCGTCTTGTAGAACATGCAGGATCTT
CGGTCCTCGTCCTCGCCATCGGGACAGTCGATGAAGCCATCGCACAGCAC
ATGATCGTCTATGCAGCGGTATCTGCCCTGCCGGTCGGGAATCGGACAGG
CGAATCGCTCCATGCCATCCATGGCGGTAGGACACTCGATTTGTGGCACA
TCGTATTGCCGTTGACCGCGGGCGGTGCGCAGCATCAGCTGGCTGGCTAT
GCTGTGTGAAATCGGTGGCTGCGCTGAGTAACCGCCTCCTGGCGATCCCA
TGGATCCCGCCGATCCGGAACCGGATCGCTTATGGCTGGGATCCTTTTTG
TCCTGCTGCGACTGTTGCTCCACCTGCTGCTGTTTAGGTAGTCCATCGCC
GGCGGCTTGTTTGCCGGAGGAAGAAGTGGCGGAGGAGACGGCCGAGGATG
CACTGCTACCTAGCTCGCTATGTGGCTTCTCGTTATCCTTGGAGCCGGAG
CGAGTGGATGGTTTCAGGTGCTTGCTGGCCGTGGCCTCGGAGTTGGCGGA
CAGCGATAGTTTGCCATTGCGCTGTGGCTTGAAGTGCTGGGCGAAGATCT
GGCGCTGCAGCTGCTTTTCCGCCTCAGGATTATGGGCAATGCCCTGGCCT
TTTCGTTTCCTCGCCCACTTTTGCTGCA
BO11292.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30040-PA | 1683 | jeb-RA | 971..1680 | 728..19 | 3500 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jeb-RB | 10378 | CG30040-RB | 2251..2960 | 728..19 | 3520 | 99.7 | Minus |
jeb-RA | 4455 | CG30040-RA | 1764..2473 | 728..19 | 3520 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12116599..12117090 | 237..728 | 2430 | 99.6 | Plus |
2R | 25286936 | 2R | 12092747..12092908 | 76..237 | 810 | 100 | Plus |
2R | 25286936 | 2R | 12092612..12092669 | 19..76 | 290 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 17:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6832 | 434..377 | 112 | 67.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6861 | 434..381 | 110 | 69.1 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 680..715 | 399..434 | 108 | 77.8 | Plus |
BO11292.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:12 Download gff for
BO11292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jeb-PA | 972..1683 | 15..727 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:42 Download gff for
BO11292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30040-PA | 972..1683 | 15..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:36:15 Download gff for
BO11292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jeb-RA | 1765..2479 | 12..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:38:53 Download gff for
BO11292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jeb-RA | 1765..2479 | 12..727 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:38:53 Download gff for
BO11292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12092606..12092668 | 12..75 | 96 | <- | Plus |
2R | 12092747..12092907 | 76..236 | 100 | <- | Plus |
2R | 12116599..12117089 | 237..727 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:36:15 Download gff for
BO11292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7980111..7980173 | 12..75 | 96 | <- | Plus |
arm_2R | 7980252..7980412 | 76..236 | 100 | <- | Plus |
arm_2R | 8004104..8004594 | 237..727 | 99 | | Plus |
BO11292.5prime Sequence
759 bp (704 high quality bases) assembled on 2006-04-19
> BO11292.5prime
GAAGTTATCAGTCGACATGTTCTGCTCGCTGGCCCAGACGCTCTTCTGCG
TCCTGCTCATACAGGGCGGCCTCTATGCCCTCCATCTGAGCGGAAACGGA
AATGGCAACGGGAACGGGAATGGGAACGGCGAGAAGTCGCTGGGCGAAGC
CAAGGCAGTGCAGGTGCCCAGTCATCCCGTTGGACCCTCGACGGGAGTAG
CCGCCGCCTGGCAGACCGCACCCTCGCAGCAGCAGCAGCACCAACAGCAT
CCCGGAGGATCTCCGCCCGGCGGTGGATCCTCGCCGCATGGCCATCGGTC
CGCCGCAGCGGCCGCCTTCGATGCCACCACCGTGCGGCTGAACAAGGAGA
TAGCGGATATGGCCCAGCTGGAGCGAGAGCGACTAATGCTCCTGGCCCGC
GCCAAGCAGACGGCGGAACAGCCGCCGGCGGGCAGTAATCATCGCGGTCA
TCCCTTCATTGCCGGCCGGATACAGATGCAGCCCAGCGAGGAGCTGGAAG
TGGGCGACTATCCGGCGCTGTTGCAGCAGGCCGCACGGGGCTACATCTTC
GGTAATGTGCAGAAGCAACCACCGACGCCGGTTACCCTGGAACAGGATTA
TGAGCAGCTGAGGGATCTGGAGAATAGACCCGTTAAATACTACGGAAGAG
TGGTGCAGCCAGCGGAGAGGGAGGAGCAGGTGGAGGCTCTCTACGAACCG
CTGCACTCGTTCGGCGACTTTGATGACTTCTCGGAACTGGAGCAGGAACC
GCAGGAGCC
BO11292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30040-PA | 1683 | jeb-RA | 1..743 | 17..759 | 3715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jeb-RB | 10378 | CG30040-RB | 1281..2023 | 17..759 | 3715 | 100 | Plus |
jeb-RA | 4455 | CG30040-RA | 794..1536 | 17..759 | 3715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12117318..12118060 | 759..17 | 3715 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 05:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2373 | 226..251 | 112 | 92.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2376 | 226..251 | 112 | 92.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2478 | 227..251 | 107 | 92 | Plus |
BO11292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:13 Download gff for
BO11292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jeb-PA | 1..743 | 17..759 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:43 Download gff for
BO11292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30040-PA | 1..743 | 17..759 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:51:01 Download gff for
BO11292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jeb-RA | 794..1536 | 17..759 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:28:22 Download gff for
BO11292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jeb-RA | 794..1536 | 17..759 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:28:22 Download gff for
BO11292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12117318..12118058 | 19..759 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:51:01 Download gff for
BO11292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8004823..8005563 | 19..759 | 100 | <- | Minus |
BO11292.complete Sequence
1714 bp assembled on 2008-01-16
GenBank Submission: FJ638682
> BO11292.complete
GAAGTTATCAGTCGACATGTTCTGCTCGCTGGCCCAGACGCTCTTCTGCG
TCCTGCTCATACAGGGCGGCCTCTATGCCCTCCATCTGAGCGGAAACGGA
AATGGCAACGGGAACGGGAATGGGAACGGCGAGAAGTCGCTGGGCGAAGC
CAAGGCAGTGCAGGTGCCCAGTCATCCCGTTGGACCCTCGACGGGAGTAG
CCGCCGCCTGGCAGACCGCACCCTCGCAGCAGCAGCAGCACCAACAGCAT
CCCGGAGGATCTCCGCCCGGCGGTGGATCCTCGCCGCATGGCCATCGGTC
CGCCGCAGCGGCCGCCTTCGATGCCACCACCGTGCGGCTGAACAAGGAGA
TAGCGGATATGGCCCAGCTGGAGCGAGAGCGACTAATGCTCCTGGCCCGC
GCCAAGCAGACGGCGGAACAGCCGCCGGCGGGCAGTAATCATCGCGGTCA
TCCCTTCATTGCCGGCCGGATACAGATGCAGCCCAGCGAGGAGCTGGAAG
TGGGCGACTATCCGGCGCTGTTGCAGCAGGCCGCACGGGGCTACATCTTC
GGTAATGTGCAGAAGCAACCACCGACGCCGGTTACCCTGGAACAGGATTA
TGAGCAGCTGAGGGATCTGGAGAATAGACCCGTTAAATACTACGGAAGAG
TGGTGCAGCCAGCGGAGAGGGAGGAGCAGGTGGAGGCTCTCTACGAACCG
CTGCACTCGTTCGGCGACTTTGATGACTTCTCGGAACTGGAGCAGGAACC
GCAGGAGCCGCACTTGGGCGAGGATGAGTTGCTGCGTGAACTGGATGCCT
ATCAATATCACGGCCTGGAGGACGAAACCCTTCCGGAGAATCCCTATCGC
ACGCTGGAGCAATTGGAGCTGGGTGCACCCGACTCCCTGCAGCAGCTCTT
CGAGCAGGAACAGGAGCAGCGAGATGCCCCCTTCAAGGCGATGCACACCG
GCAAAATCCACAACCCGGGCAACTACAACATAAGGGTGCAGCAAAAGTGG
GCGAGGAAACGAAATGGCCAGGGCATTGCCCATAATCCTGAGGCGGAAAA
GCAGCTGCAGCGCCAGATCTTCGCCCAGCACTTCAAGCCACAGCGCAATG
GCAAACTATCGCTGTCCGCCAACTCCGAGGCCACGGCCAGCAAGCACCTG
AAACCATCCACTCGCTCCGGCTCCAAGGATAACGAGAAGCCACATAGCGA
GCTAGGTAGCAGTGCATCCTCGGCCGTCTCCTCCGCCACTTCTTCCTCCG
GCAAACAAGCCGCCGGCGATGGACTACCTAAACAGCAGCAGGTGGAGCAA
CAGTCGCAGCAGGACAAAAAGGATCCCAGCCATAAGCGATCCGGTTCCGG
ATCGGCGGGATCCATGGGATCGCCAGGAGGCGGTTACTCAGCGCAGCCAC
CGATTTCACACAGCATAGCCAGCCAGCTGATGCTGCGCACCGCCCGCGGT
CAACGGCAATACGATGTGCCACAAATCGAGTGTCCTACCGCCATGGATGG
CATGGAGCGATTCGCCTGTCCGATTCCCGACCGGCAGGGCAGATACCGCT
GCATAGACGATCATGTGCTGTGCGATGGCTTCATCGACTGTCCCGATGGC
GAGGACGAGGACCGAAGATCCTGCATGTTCTACAAGACGACGAAGGCCCA
TCTGGATGTGTTAGCGGATGCGTTACTACGCTGGGCGCGAGGGCGTGCAA
GCTTTCTAGACCAT
BO11292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jeb-RB | 1683 | CG30040-PB | 1..1680 | 17..1696 | 8385 | 99.9 | Plus |
jeb-RA | 1683 | CG30040-PA | 1..1680 | 17..1696 | 8385 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jeb-RB | 10378 | CG30040-RB | 1281..2960 | 17..1696 | 8385 | 99.9 | Plus |
jeb-RA | 4455 | CG30040-RA | 794..2473 | 17..1696 | 8385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12116599..12118060 | 1478..17 | 7295 | 99.9 | Minus |
2R | 25286936 | 2R | 12092747..12092908 | 1639..1478 | 810 | 100 | Minus |
2R | 25286936 | 2R | 12092612..12092669 | 1696..1639 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:46:36 has no hits.
BO11292.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:11 Download gff for
BO11292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jeb-RA | 1..1683 | 17..1700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:26 Download gff for
BO11292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jeb-RA | 818..2492 | 22..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:17 Download gff for
BO11292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jeb-RA | 799..2473 | 22..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:11 Download gff for
BO11292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jeb-RA | 813..2498 | 17..1703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:22 Download gff for
BO11292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jeb-RA | 799..2473 | 22..1698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:22 Download gff for
BO11292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12092610..12092668 | 1640..1698 | 96 | <- | Minus |
2R | 12092747..12092907 | 1479..1639 | 100 | <- | Minus |
2R | 12116599..12118055 | 22..1478 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:17 Download gff for
BO11292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7980115..7980173 | 1640..1698 | 96 | <- | Minus |
arm_2R | 7980252..7980412 | 1479..1639 | 100 | <- | Minus |
arm_2R | 8004104..8005560 | 22..1478 | 99 | | Minus |
BO11292.pep Sequence
Translation from 16 to 1714
> BO11292.pep
MFCSLAQTLFCVLLIQGGLYALHLSGNGNGNGNGNGNGEKSLGEAKAVQV
PSHPVGPSTGVAAAWQTAPSQQQQHQQHPGGSPPGGGSSPHGHRSAAAAA
FDATTVRLNKEIADMAQLERERLMLLARAKQTAEQPPAGSNHRGHPFIAG
RIQMQPSEELEVGDYPALLQQAARGYIFGNVQKQPPTPVTLEQDYEQLRD
LENRPVKYYGRVVQPAEREEQVEALYEPLHSFGDFDDFSELEQEPQEPHL
GEDELLRELDAYQYHGLEDETLPENPYRTLEQLELGAPDSLQQLFEQEQE
QRDAPFKAMHTGKIHNPGNYNIRVQQKWARKRNGQGIAHNPEAEKQLQRQ
IFAQHFKPQRNGKLSLSANSEATASKHLKPSTRSGSKDNEKPHSELGSSA
SSAVSSATSSSGKQAAGDGLPKQQQVEQQSQQDKKDPSHKRSGSGSAGSM
GSPGGGYSAQPPISHSIASQLMLRTARGQRQYDVPQIECPTAMDGMERFA
CPIPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRSCMFYKTTKAHLDVLA
DALLRWARGRASFLDH
BO11292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jeb-PB | 560 | CG30040-PB | 1..560 | 1..560 | 2962 | 100 | Plus |
jeb-PA | 560 | CG30040-PA | 1..560 | 1..560 | 2962 | 100 | Plus |