Clone BO11292 Report

Search the DGRC for BO11292

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:92
Vector:pDNR-Dual
Associated Gene/Transcriptjeb-RA
Protein status:BO11292.pep:
Sequenced Size:1714

Clone Sequence Records

BO11292.3prime Sequence

728 bp (650 high quality bases) assembled on 2006-04-19

> BO11292.3prime
ATGGTCTAGAAAGCTTGCACGCCCTCGCGCCCAGCGTAGTAACGCATCCG
CTAACACATCCAGATGGGCCTTCGTCGTCTTGTAGAACATGCAGGATCTT
CGGTCCTCGTCCTCGCCATCGGGACAGTCGATGAAGCCATCGCACAGCAC
ATGATCGTCTATGCAGCGGTATCTGCCCTGCCGGTCGGGAATCGGACAGG
CGAATCGCTCCATGCCATCCATGGCGGTAGGACACTCGATTTGTGGCACA
TCGTATTGCCGTTGACCGCGGGCGGTGCGCAGCATCAGCTGGCTGGCTAT
GCTGTGTGAAATCGGTGGCTGCGCTGAGTAACCGCCTCCTGGCGATCCCA
TGGATCCCGCCGATCCGGAACCGGATCGCTTATGGCTGGGATCCTTTTTG
TCCTGCTGCGACTGTTGCTCCACCTGCTGCTGTTTAGGTAGTCCATCGCC
GGCGGCTTGTTTGCCGGAGGAAGAAGTGGCGGAGGAGACGGCCGAGGATG
CACTGCTACCTAGCTCGCTATGTGGCTTCTCGTTATCCTTGGAGCCGGAG
CGAGTGGATGGTTTCAGGTGCTTGCTGGCCGTGGCCTCGGAGTTGGCGGA
CAGCGATAGTTTGCCATTGCGCTGTGGCTTGAAGTGCTGGGCGAAGATCT
GGCGCTGCAGCTGCTTTTCCGCCTCAGGATTATGGGCAATGCCCTGGCCT
TTTCGTTTCCTCGCCCACTTTTGCTGCA

BO11292.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG30040-PA 1683 jeb-RA 971..1680 728..19 3500 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
jeb-RB 10378 CG30040-RB 2251..2960 728..19 3520 99.7 Minus
jeb-RA 4455 CG30040-RA 1764..2473 728..19 3520 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12116599..12117090 237..728 2430 99.6 Plus
2R 25286936 2R 12092747..12092908 76..237 810 100 Plus
2R 25286936 2R 12092612..12092669 19..76 290 100 Plus
Blast to na_te.dros performed 2015-02-06 17:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6832 434..377 112 67.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6861 434..381 110 69.1 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 680..715 399..434 108 77.8 Plus

BO11292.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:12 Download gff for BO11292.3prime
Subject Subject Range Query Range Percent Splice Strand
jeb-PA 972..1683 15..727 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:42 Download gff for BO11292.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30040-PA 972..1683 15..727 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:36:15 Download gff for BO11292.3prime
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1765..2479 12..727 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:38:53 Download gff for BO11292.3prime
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1765..2479 12..727 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:38:53 Download gff for BO11292.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12092606..12092668 12..75 96 <- Plus
2R 12092747..12092907 76..236 100 <- Plus
2R 12116599..12117089 237..727 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:36:15 Download gff for BO11292.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7980111..7980173 12..75 96 <- Plus
arm_2R 7980252..7980412 76..236 100 <- Plus
arm_2R 8004104..8004594 237..727 99   Plus

BO11292.5prime Sequence

759 bp (704 high quality bases) assembled on 2006-04-19

> BO11292.5prime
GAAGTTATCAGTCGACATGTTCTGCTCGCTGGCCCAGACGCTCTTCTGCG
TCCTGCTCATACAGGGCGGCCTCTATGCCCTCCATCTGAGCGGAAACGGA
AATGGCAACGGGAACGGGAATGGGAACGGCGAGAAGTCGCTGGGCGAAGC
CAAGGCAGTGCAGGTGCCCAGTCATCCCGTTGGACCCTCGACGGGAGTAG
CCGCCGCCTGGCAGACCGCACCCTCGCAGCAGCAGCAGCACCAACAGCAT
CCCGGAGGATCTCCGCCCGGCGGTGGATCCTCGCCGCATGGCCATCGGTC
CGCCGCAGCGGCCGCCTTCGATGCCACCACCGTGCGGCTGAACAAGGAGA
TAGCGGATATGGCCCAGCTGGAGCGAGAGCGACTAATGCTCCTGGCCCGC
GCCAAGCAGACGGCGGAACAGCCGCCGGCGGGCAGTAATCATCGCGGTCA
TCCCTTCATTGCCGGCCGGATACAGATGCAGCCCAGCGAGGAGCTGGAAG
TGGGCGACTATCCGGCGCTGTTGCAGCAGGCCGCACGGGGCTACATCTTC
GGTAATGTGCAGAAGCAACCACCGACGCCGGTTACCCTGGAACAGGATTA
TGAGCAGCTGAGGGATCTGGAGAATAGACCCGTTAAATACTACGGAAGAG
TGGTGCAGCCAGCGGAGAGGGAGGAGCAGGTGGAGGCTCTCTACGAACCG
CTGCACTCGTTCGGCGACTTTGATGACTTCTCGGAACTGGAGCAGGAACC
GCAGGAGCC

BO11292.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG30040-PA 1683 jeb-RA 1..743 17..759 3715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
jeb-RB 10378 CG30040-RB 1281..2023 17..759 3715 100 Plus
jeb-RA 4455 CG30040-RA 794..1536 17..759 3715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12117318..12118060 759..17 3715 100 Minus
Blast to na_te.dros performed 2015-02-10 05:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2373 226..251 112 92.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2376 226..251 112 92.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2454..2478 227..251 107 92 Plus

BO11292.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:13 Download gff for BO11292.5prime
Subject Subject Range Query Range Percent Splice Strand
jeb-PA 1..743 17..759 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:43 Download gff for BO11292.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30040-PA 1..743 17..759 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:51:01 Download gff for BO11292.5prime
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 794..1536 17..759 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:28:22 Download gff for BO11292.5prime
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 794..1536 17..759 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:28:22 Download gff for BO11292.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12117318..12118058 19..759 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:51:01 Download gff for BO11292.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8004823..8005563 19..759 100 <- Minus

BO11292.complete Sequence

1714 bp assembled on 2008-01-16

GenBank Submission: FJ638682

> BO11292.complete
GAAGTTATCAGTCGACATGTTCTGCTCGCTGGCCCAGACGCTCTTCTGCG
TCCTGCTCATACAGGGCGGCCTCTATGCCCTCCATCTGAGCGGAAACGGA
AATGGCAACGGGAACGGGAATGGGAACGGCGAGAAGTCGCTGGGCGAAGC
CAAGGCAGTGCAGGTGCCCAGTCATCCCGTTGGACCCTCGACGGGAGTAG
CCGCCGCCTGGCAGACCGCACCCTCGCAGCAGCAGCAGCACCAACAGCAT
CCCGGAGGATCTCCGCCCGGCGGTGGATCCTCGCCGCATGGCCATCGGTC
CGCCGCAGCGGCCGCCTTCGATGCCACCACCGTGCGGCTGAACAAGGAGA
TAGCGGATATGGCCCAGCTGGAGCGAGAGCGACTAATGCTCCTGGCCCGC
GCCAAGCAGACGGCGGAACAGCCGCCGGCGGGCAGTAATCATCGCGGTCA
TCCCTTCATTGCCGGCCGGATACAGATGCAGCCCAGCGAGGAGCTGGAAG
TGGGCGACTATCCGGCGCTGTTGCAGCAGGCCGCACGGGGCTACATCTTC
GGTAATGTGCAGAAGCAACCACCGACGCCGGTTACCCTGGAACAGGATTA
TGAGCAGCTGAGGGATCTGGAGAATAGACCCGTTAAATACTACGGAAGAG
TGGTGCAGCCAGCGGAGAGGGAGGAGCAGGTGGAGGCTCTCTACGAACCG
CTGCACTCGTTCGGCGACTTTGATGACTTCTCGGAACTGGAGCAGGAACC
GCAGGAGCCGCACTTGGGCGAGGATGAGTTGCTGCGTGAACTGGATGCCT
ATCAATATCACGGCCTGGAGGACGAAACCCTTCCGGAGAATCCCTATCGC
ACGCTGGAGCAATTGGAGCTGGGTGCACCCGACTCCCTGCAGCAGCTCTT
CGAGCAGGAACAGGAGCAGCGAGATGCCCCCTTCAAGGCGATGCACACCG
GCAAAATCCACAACCCGGGCAACTACAACATAAGGGTGCAGCAAAAGTGG
GCGAGGAAACGAAATGGCCAGGGCATTGCCCATAATCCTGAGGCGGAAAA
GCAGCTGCAGCGCCAGATCTTCGCCCAGCACTTCAAGCCACAGCGCAATG
GCAAACTATCGCTGTCCGCCAACTCCGAGGCCACGGCCAGCAAGCACCTG
AAACCATCCACTCGCTCCGGCTCCAAGGATAACGAGAAGCCACATAGCGA
GCTAGGTAGCAGTGCATCCTCGGCCGTCTCCTCCGCCACTTCTTCCTCCG
GCAAACAAGCCGCCGGCGATGGACTACCTAAACAGCAGCAGGTGGAGCAA
CAGTCGCAGCAGGACAAAAAGGATCCCAGCCATAAGCGATCCGGTTCCGG
ATCGGCGGGATCCATGGGATCGCCAGGAGGCGGTTACTCAGCGCAGCCAC
CGATTTCACACAGCATAGCCAGCCAGCTGATGCTGCGCACCGCCCGCGGT
CAACGGCAATACGATGTGCCACAAATCGAGTGTCCTACCGCCATGGATGG
CATGGAGCGATTCGCCTGTCCGATTCCCGACCGGCAGGGCAGATACCGCT
GCATAGACGATCATGTGCTGTGCGATGGCTTCATCGACTGTCCCGATGGC
GAGGACGAGGACCGAAGATCCTGCATGTTCTACAAGACGACGAAGGCCCA
TCTGGATGTGTTAGCGGATGCGTTACTACGCTGGGCGCGAGGGCGTGCAA
GCTTTCTAGACCAT

BO11292.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
jeb-RB 1683 CG30040-PB 1..1680 17..1696 8385 99.9 Plus
jeb-RA 1683 CG30040-PA 1..1680 17..1696 8385 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
jeb-RB 10378 CG30040-RB 1281..2960 17..1696 8385 99.9 Plus
jeb-RA 4455 CG30040-RA 794..2473 17..1696 8385 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12116599..12118060 1478..17 7295 99.9 Minus
2R 25286936 2R 12092747..12092908 1639..1478 810 100 Minus
2R 25286936 2R 12092612..12092669 1696..1639 290 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:46:36 has no hits.

BO11292.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:11 Download gff for BO11292.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 1..1683 17..1700 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:26 Download gff for BO11292.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 818..2492 22..1698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:17 Download gff for BO11292.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 799..2473 22..1698 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:11 Download gff for BO11292.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 813..2498 17..1703 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:22 Download gff for BO11292.complete
Subject Subject Range Query Range Percent Splice Strand
jeb-RA 799..2473 22..1698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:22 Download gff for BO11292.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12092610..12092668 1640..1698 96 <- Minus
2R 12092747..12092907 1479..1639 100 <- Minus
2R 12116599..12118055 22..1478 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:17 Download gff for BO11292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7980115..7980173 1640..1698 96 <- Minus
arm_2R 7980252..7980412 1479..1639 100 <- Minus
arm_2R 8004104..8005560 22..1478 99   Minus

BO11292.pep Sequence

Translation from 16 to 1714

> BO11292.pep
MFCSLAQTLFCVLLIQGGLYALHLSGNGNGNGNGNGNGEKSLGEAKAVQV
PSHPVGPSTGVAAAWQTAPSQQQQHQQHPGGSPPGGGSSPHGHRSAAAAA
FDATTVRLNKEIADMAQLERERLMLLARAKQTAEQPPAGSNHRGHPFIAG
RIQMQPSEELEVGDYPALLQQAARGYIFGNVQKQPPTPVTLEQDYEQLRD
LENRPVKYYGRVVQPAEREEQVEALYEPLHSFGDFDDFSELEQEPQEPHL
GEDELLRELDAYQYHGLEDETLPENPYRTLEQLELGAPDSLQQLFEQEQE
QRDAPFKAMHTGKIHNPGNYNIRVQQKWARKRNGQGIAHNPEAEKQLQRQ
IFAQHFKPQRNGKLSLSANSEATASKHLKPSTRSGSKDNEKPHSELGSSA
SSAVSSATSSSGKQAAGDGLPKQQQVEQQSQQDKKDPSHKRSGSGSAGSM
GSPGGGYSAQPPISHSIASQLMLRTARGQRQYDVPQIECPTAMDGMERFA
CPIPDRQGRYRCIDDHVLCDGFIDCPDGEDEDRRSCMFYKTTKAHLDVLA
DALLRWARGRASFLDH

BO11292.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
jeb-PB 560 CG30040-PB 1..560 1..560 2962 100 Plus
jeb-PA 560 CG30040-PA 1..560 1..560 2962 100 Plus