Clone Sequence Records
BO11294.3prime Sequence
783 bp (770 high quality bases) assembled on 2006-04-19
> BO11294.3prime
ATGGTCTAGAAAGCTTGCCTCCTCCGGCCAGCCGAGATCCTCGCCGACCA
GCTCGTAAAATCGCTGATTGTACTCGGCGAAGAACTTTCGCAATCTGGAG
ACCACCACGGGATCCACATGCGGATGCTTCCTGCCCTTCGTCTCCCGGAG
GCAGCGATCCCCGTTGTCATAGCGCAGACAGTAGAAGCCCTTGGTCTCAT
TGAAGTAAAAGTGCTCGCTATTCACCCGATGCTCAATGCCCAAGAAAGCC
TCGATGCGTTTCAGCTGAGAAACCGGATCTTCGATGAGGCGATCCCCATT
GACCACCAGCAGCTGCTCCCGCGGAAATACCTCCAGCCAGCGATGGAGGT
GGACATGGTACATGGAGATGCTGAGCGGTCGATAAGCCTCGTTAACGGTG
CCATTGGGAAATATGGCCAGCTCCTCAAAGGACTTGGCTGCCATTTGGGC
GGCGCTCGCCATTGGCGACATTGTTGTCGTGGTCATCGCAGCTCCAGCGA
CACCACCGCCACTGCCCAACGCCTGTCTCCTGACCAAAGACGAAGATACC
GTTTTGCCTTTCGTCTCCTTGGCGCCCGCCCCACTGCCACCCAACAGGGC
ATTGTCATAGCCACGGGCCGACTGCAGTTTGGCATACAGCAGTGATTGTG
TTGGCATCTTGGCAGCTGCGGTCCCGCTTCCCCCACCACCACCAGCACCA
CCACCACCTGCCCCACCGCCAGAACTCTCCCTCGGACTCGGTGGATCCTT
CTCGGCCAACGGCAGAATGGCGGTGGCCGCATG
BO11294.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33147-PA | 1818 | CG33147-RA | 1051..1815 | 783..19 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-A-RB | 5724 | CG33147-RB | 2458..3222 | 783..19 | 3825 | 100 | Minus |
Hs3st-A-RA | 5570 | CG33147-RA | 2458..3222 | 783..19 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18750905..18751256 | 783..432 | 1760 | 100 | Minus |
2R | 25286936 | 2R | 18751952..18752173 | 240..19 | 1110 | 100 | Minus |
2R | 25286936 | 2R | 18751639..18751833 | 433..239 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:53:58 has no hits.
BO11294.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:14 Download gff for
BO11294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33147-PA | 1051..1818 | 15..783 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:44 Download gff for
BO11294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33147-PA | 1051..1818 | 15..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:53:51 Download gff for
BO11294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 2458..3228 | 12..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:52 Download gff for
BO11294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 2458..3228 | 12..783 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:52 Download gff for
BO11294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18750905..18751254 | 434..783 | 100 | -> | Minus |
2R | 18751639..18751832 | 240..433 | 100 | -> | Minus |
2R | 18751953..18752179 | 12..239 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:53:51 Download gff for
BO11294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14638410..14638759 | 434..783 | 100 | -> | Minus |
arm_2R | 14639144..14639337 | 240..433 | 100 | -> | Minus |
arm_2R | 14639458..14639684 | 12..239 | 99 | | Minus |
BO11294.5prime Sequence
824 bp (744 high quality bases) assembled on 2006-04-19
> BO11294.5prime
GAAGTTATCAGTCGACATGACTGCCGCCAAAAGACGTGCGAGCAGCAGCA
ACAGCAGCGGCAGCAGCAACACTAGCGGCAGCAGTAATGGCAACGAGCAG
CACTCCCAGCAGCAACATCTGCAGCTGCAGCAGCAGCAACAGCAGCATGC
CCAGCCAAACGAGTACCAACAGTTGCTGCAGCATCCCCACCATCACTATC
AGCAACACTACAGCGGCAACAACAACACCAGCGGCAACAACAGCAATAGC
AGCAACACGCAGCAATACCACCAGAGACAGCAGCAACATCAGGCGACATT
GCGCGACTGTTCCGTCAAATTGCCGCTGGATATCCTATGGCTACCGAAAT
CGGCAATGCGGCCGGCGGGTCCTGATACCTCGCCCACGGACTGCATCCTG
GTGGTGGGCGTTTCCCGTCCAAAATTGGCCGTCGTCTTCCTTACGGTCAT
GTTGATCTCTCTGTTCCTCACCTTCCATGTCCTGTACGATAGTGCCGTAT
ACAATATCCAAGCGGCCCAGGCTGTCCACGAAAGGCATCGTCTATCTATG
ACCGCCTCCGCATCGGCTCTGGCATCCTCCTCCTCATCGTCGTCCAATTC
CGGCTCCTCCTTCTCCTCCGCCGGTGGCGCCTCCAATCATCTGCCCGTGT
TCGTAAAGCCCGTGCCCAGCTCCAATCAGCTCAGCCATCCCATGGTTTTT
CCCTCCAGCCGTGTGCACTTTCCAAAAACCAGTCGACGGTTGCCGCAGGC
ACTCATCATCGGTGTGCGAAAATGTGGTACACGGGCGCTGCTGGAGATGC
TCTACCTACATCCGCGGATCCAGA
BO11294.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33147-PA | 1818 | CG33147-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
CG32082-PA | 3225 | CG32082-RA | 753..781 | 211..239 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-A-RB | 5724 | CG33147-RB | 1408..2215 | 17..824 | 4040 | 100 | Plus |
Hs3st-A-RA | 5570 | CG33147-RA | 1408..2215 | 17..824 | 4040 | 100 | Plus |
CG15772-RB | 1691 | CG15772-RB | 629..791 | 121..292 | 185 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18748051..18748463 | 337..749 | 2065 | 100 | Plus |
2R | 25286936 | 2R | 18745917..18746236 | 17..336 | 1600 | 100 | Plus |
2R | 25286936 | 2R | 18748723..18748801 | 746..824 | 395 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 05:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..7000 | 2..295 | 392 | 64.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1129 | 218..292 | 177 | 73.3 | Plus |
BO11294.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:15 Download gff for
BO11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33147-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:46 Download gff for
BO11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33147-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:53:24 Download gff for
BO11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 1408..2214 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:30:37 Download gff for
BO11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 1408..2214 | 17..823 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:30:37 Download gff for
BO11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18745917..18746236 | 17..336 | 100 | -> | Plus |
2R | 18748051..18748462 | 337..748 | 100 | -> | Plus |
2R | 18748726..18748800 | 749..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:53:24 Download gff for
BO11294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14633422..14633741 | 17..336 | 100 | -> | Plus |
arm_2R | 14635556..14635967 | 337..748 | 100 | -> | Plus |
arm_2R | 14636231..14636305 | 749..823 | 100 | | Plus |
BO11294.complete Sequence
1849 bp assembled on 2008-01-16
GenBank Submission: FJ632060
> BO11294.complete
GAAGTTATCAGTCGACATGACTGCCGCCAAAAGACGTGCGAGCAGCAGCA
ACAGCAGCGGCAGCAGCAACACTAGCGGCAGCAGTAATGGCAACGAGCAG
CACTCCCAGCAGCAACATCTGCAGCTGCAGCAGCAGCAACAGCAGCATGC
CCAGCCAAACGAGTACCAACAGTTGCTGCAGCATCCCCACCATCACTATC
AGCAACACTACAGCGGCAACAACAACACCAGCGGCAACAACAGCAATAGC
AGCAACACGCAGCAATACCACCAGAGACAGCAGCAACATCAGGCGACATT
GCGCGACTGTTCCGTCAAATTGCCGCTGGATATCCTATGGCTACCGAAAT
CGGCAATGCGGCCGGCGGGTCCTGATACCTCGCCCACGGACTGCATCCTG
GTGGTGGGCGTTTCCCGTCCAAAATTGGCCGTCGTCTTCCTTACGGTCAT
GTTGATCTCTCTGTTCCTCACCTTCCATGTCCTGTACGATAGTGCCGTAT
ACAATATCCAAGCGGCCCAGGCTGTCCACGAAAGGCATCGTCTATCTATG
ACCGCCTCCGCATCGGCTCTGGCATCCTCCTCCTCATCGTCGTCCAATTC
CGGCTCCTCCTTCTCCTCCGCCGGTGGCGCCTCCAATCATCTGCCCGTGT
TCGTAAAGCCCGTGCCCAGCTCCAATCAGCTCAGCCATCCCATGGTTTTT
CCCTCCAGCCGTGTGCACTTTCCAAAAACCAGTCGACGGTTGCCGCAGGC
ACTCATCATCGGTGTGCGAAAATGTGGTACACGGGCGCTGCTGGAGATGC
TCTACCTACATCCGCGGATCCAGAAGGCCGGCGGTGAGGTGCACTTCTTC
GACCGGGACGAGAACTACCTGAAAGGTCTGGAGTGGTACCGCAAGAAGAT
GCCACATTCGTTCCGTGGCCAGATAACCATCGAAAAGAGTCCCAGCTACT
TTGTGTCGCCAGAGGTGCCGGAACGTGTGCGGGCCATGAATGCGAGCATC
AAGCTGCTCCTGATTGTCCGGGAGCCGGTGACCCGGGCCATTTCGGACTA
CACGCAGCTGCGTAGCCATGCGGCCACCGCCATTCTGCCGTTGGCCGAGA
AGGATCCACCGAGTCCGAGGGAGAGTTCTGGCGGTGGGGCAGGTGGTGGT
GGTGCTGGTGGTGGTGGGGGAAGCGGGACCGCAGCTGCCAAGATGCCAAC
ACAATCACTGCTGTATGCCAAACTGCAGTCGGCCCGTGGCTATGACAATG
CCCTGTTGGGTGGCAGTGGGGCGGGCGCCAAGGAGACGAAAGGCAAAACG
GTATCTTCGTCTTTGGTCAGGAGACAGGCGTTGGGCAGTGGCGGTGGTGT
CGCTGGAGCTGCGATGACCACGACAACAATGTCGCCAATGGCGAGCGCCG
CCCAAATGGCAGCCAAGTCCTTTGAGGAGCTGGCCATATTTCCCAATGGC
ACCGTTAACGAGGCTTATCGACCGCTCAGCATCTCCATGTACCATGTCCA
CCTCCATCGCTGGCTGGAGGTATTTCCGCGGGAGCAGCTGCTGGTGGTCA
ATGGGGATCGCCTCATCGAAGATCCGGTTTCTCAGCTGAAACGCATCGAG
GCTTTCTTGGGCATTGAGCATCGGGTGAATAGCGAGCACTTTTACTTCAA
TGAGACCAAGGGCTTCTACTGTCTGCGCTATGACAACGGGGATCGCTGCC
TCCGGGAGACGAAGGGCAGGAAGCATCCGCATGTGGATCCCGTGGTGGTC
TCCAGATTGCGAAAGTTCTTCGCCGAGTACAATCAGCGATTTTACGAGCT
GGTCGGCGAGGATCTCGGCTGGCCGGAGGAGGCAAGCTTTCTAGACCAT
BO11294.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-A-RB | 1818 | CG33147-PB | 1..1815 | 17..1831 | 9075 | 100 | Plus |
Hs3st-A-RA | 1818 | CG33147-PA | 1..1815 | 17..1831 | 9075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-A-RB | 5724 | CG33147-RB | 1408..3222 | 17..1831 | 9075 | 100 | Plus |
Hs3st-A-RA | 5570 | CG33147-RA | 1408..3222 | 17..1831 | 9075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18750801..18751256 | 963..1418 | 2280 | 100 | Plus |
2R | 25286936 | 2R | 18748051..18748463 | 337..749 | 2065 | 100 | Plus |
2R | 25286936 | 2R | 18745917..18746236 | 17..336 | 1600 | 100 | Plus |
2R | 25286936 | 2R | 18748723..18748944 | 746..967 | 1110 | 100 | Plus |
2R | 25286936 | 2R | 18751952..18752173 | 1610..1831 | 1110 | 100 | Plus |
2R | 25286936 | 2R | 18751639..18751833 | 1417..1611 | 975 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 11:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..7000 | 2..295 | 392 | 64.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1129 | 218..292 | 177 | 73.3 | Plus |
BO11294.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:15 Download gff for
BO11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 1..1818 | 17..1835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:07 Download gff for
BO11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 1393..3207 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:01:51 Download gff for
BO11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 1408..3222 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:15 Download gff for
BO11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 1393..3213 | 17..1838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:56 Download gff for
BO11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs3st-A-RA | 1408..3222 | 17..1833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:56 Download gff for
BO11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18745917..18746236 | 17..336 | 100 | -> | Plus |
2R | 18748051..18748462 | 337..748 | 100 | -> | Plus |
2R | 18748726..18748941 | 749..964 | 100 | -> | Plus |
2R | 18750803..18751254 | 965..1416 | 100 | -> | Plus |
2R | 18751639..18751832 | 1417..1610 | 100 | -> | Plus |
2R | 18751953..18752173 | 1611..1833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:01:51 Download gff for
BO11294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14633422..14633741 | 17..336 | 100 | -> | Plus |
arm_2R | 14635556..14635967 | 337..748 | 100 | -> | Plus |
arm_2R | 14636231..14636446 | 749..964 | 100 | -> | Plus |
arm_2R | 14638308..14638759 | 965..1416 | 100 | -> | Plus |
arm_2R | 14639144..14639337 | 1417..1610 | 100 | -> | Plus |
arm_2R | 14639458..14639678 | 1611..1833 | 99 | | Plus |
BO11294.pep Sequence
Translation from 16 to 1849
> BO11294.pep
MTAAKRRASSSNSSGSSNTSGSSNGNEQHSQQQHLQLQQQQQQHAQPNEY
QQLLQHPHHHYQQHYSGNNNTSGNNSNSSNTQQYHQRQQQHQATLRDCSV
KLPLDILWLPKSAMRPAGPDTSPTDCILVVGVSRPKLAVVFLTVMLISLF
LTFHVLYDSAVYNIQAAQAVHERHRLSMTASASALASSSSSSSNSGSSFS
SAGGASNHLPVFVKPVPSSNQLSHPMVFPSSRVHFPKTSRRLPQALIIGV
RKCGTRALLEMLYLHPRIQKAGGEVHFFDRDENYLKGLEWYRKKMPHSFR
GQITIEKSPSYFVSPEVPERVRAMNASIKLLLIVREPVTRAISDYTQLRS
HAATAILPLAEKDPPSPRESSGGGAGGGGAGGGGGSGTAAAKMPTQSLLY
AKLQSARGYDNALLGGSGAGAKETKGKTVSSSLVRRQALGSGGGVAGAAM
TTTTMSPMASAAQMAAKSFEELAIFPNGTVNEAYRPLSISMYHVHLHRWL
EVFPREQLLVVNGDRLIEDPVSQLKRIEAFLGIEHRVNSEHFYFNETKGF
YCLRYDNGDRCLRETKGRKHPHVDPVVVSRLRKFFAEYNQRFYELVGEDL
GWPEEASFLDH
BO11294.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs3st-A-PB | 605 | CG33147-PB | 1..605 | 1..605 | 3138 | 100 | Plus |
Hs3st-A-PA | 605 | CG33147-PA | 1..605 | 1..605 | 3138 | 100 | Plus |
Hs3st-B-PB | 384 | CG7890-PB | 30..240 | 145..353 | 400 | 44 | Plus |
Hs3st-B-PA | 384 | CG7890-PA | 30..240 | 145..353 | 400 | 44 | Plus |
Hs3st-B-PB | 384 | CG7890-PB | 226..384 | 452..603 | 336 | 43.8 | Plus |
Hs3st-B-PA | 384 | CG7890-PA | 226..384 | 452..603 | 336 | 43.8 | Plus |
sfl-PB | 1048 | CG8339-PB | 915..1028 | 485..596 | 166 | 28.9 | Plus |