Clone BO11294 Report

Search the DGRC for BO11294

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptHs3st-A-RA
Protein status:BO11294.pep:
Sequenced Size:1849

Clone Sequence Records

BO11294.3prime Sequence

783 bp (770 high quality bases) assembled on 2006-04-19

> BO11294.3prime
ATGGTCTAGAAAGCTTGCCTCCTCCGGCCAGCCGAGATCCTCGCCGACCA
GCTCGTAAAATCGCTGATTGTACTCGGCGAAGAACTTTCGCAATCTGGAG
ACCACCACGGGATCCACATGCGGATGCTTCCTGCCCTTCGTCTCCCGGAG
GCAGCGATCCCCGTTGTCATAGCGCAGACAGTAGAAGCCCTTGGTCTCAT
TGAAGTAAAAGTGCTCGCTATTCACCCGATGCTCAATGCCCAAGAAAGCC
TCGATGCGTTTCAGCTGAGAAACCGGATCTTCGATGAGGCGATCCCCATT
GACCACCAGCAGCTGCTCCCGCGGAAATACCTCCAGCCAGCGATGGAGGT
GGACATGGTACATGGAGATGCTGAGCGGTCGATAAGCCTCGTTAACGGTG
CCATTGGGAAATATGGCCAGCTCCTCAAAGGACTTGGCTGCCATTTGGGC
GGCGCTCGCCATTGGCGACATTGTTGTCGTGGTCATCGCAGCTCCAGCGA
CACCACCGCCACTGCCCAACGCCTGTCTCCTGACCAAAGACGAAGATACC
GTTTTGCCTTTCGTCTCCTTGGCGCCCGCCCCACTGCCACCCAACAGGGC
ATTGTCATAGCCACGGGCCGACTGCAGTTTGGCATACAGCAGTGATTGTG
TTGGCATCTTGGCAGCTGCGGTCCCGCTTCCCCCACCACCACCAGCACCA
CCACCACCTGCCCCACCGCCAGAACTCTCCCTCGGACTCGGTGGATCCTT
CTCGGCCAACGGCAGAATGGCGGTGGCCGCATG

BO11294.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG33147-PA 1818 CG33147-RA 1051..1815 783..19 3825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A-RB 5724 CG33147-RB 2458..3222 783..19 3825 100 Minus
Hs3st-A-RA 5570 CG33147-RA 2458..3222 783..19 3825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18750905..18751256 783..432 1760 100 Minus
2R 25286936 2R 18751952..18752173 240..19 1110 100 Minus
2R 25286936 2R 18751639..18751833 433..239 975 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:53:58 has no hits.

BO11294.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:14 Download gff for BO11294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33147-PA 1051..1818 15..783 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:44 Download gff for BO11294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33147-PA 1051..1818 15..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:53:51 Download gff for BO11294.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 2458..3228 12..783 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:52 Download gff for BO11294.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 2458..3228 12..783 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:52 Download gff for BO11294.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18750905..18751254 434..783 100 -> Minus
2R 18751639..18751832 240..433 100 -> Minus
2R 18751953..18752179 12..239 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:53:51 Download gff for BO11294.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14638410..14638759 434..783 100 -> Minus
arm_2R 14639144..14639337 240..433 100 -> Minus
arm_2R 14639458..14639684 12..239 99   Minus

BO11294.5prime Sequence

824 bp (744 high quality bases) assembled on 2006-04-19

> BO11294.5prime
GAAGTTATCAGTCGACATGACTGCCGCCAAAAGACGTGCGAGCAGCAGCA
ACAGCAGCGGCAGCAGCAACACTAGCGGCAGCAGTAATGGCAACGAGCAG
CACTCCCAGCAGCAACATCTGCAGCTGCAGCAGCAGCAACAGCAGCATGC
CCAGCCAAACGAGTACCAACAGTTGCTGCAGCATCCCCACCATCACTATC
AGCAACACTACAGCGGCAACAACAACACCAGCGGCAACAACAGCAATAGC
AGCAACACGCAGCAATACCACCAGAGACAGCAGCAACATCAGGCGACATT
GCGCGACTGTTCCGTCAAATTGCCGCTGGATATCCTATGGCTACCGAAAT
CGGCAATGCGGCCGGCGGGTCCTGATACCTCGCCCACGGACTGCATCCTG
GTGGTGGGCGTTTCCCGTCCAAAATTGGCCGTCGTCTTCCTTACGGTCAT
GTTGATCTCTCTGTTCCTCACCTTCCATGTCCTGTACGATAGTGCCGTAT
ACAATATCCAAGCGGCCCAGGCTGTCCACGAAAGGCATCGTCTATCTATG
ACCGCCTCCGCATCGGCTCTGGCATCCTCCTCCTCATCGTCGTCCAATTC
CGGCTCCTCCTTCTCCTCCGCCGGTGGCGCCTCCAATCATCTGCCCGTGT
TCGTAAAGCCCGTGCCCAGCTCCAATCAGCTCAGCCATCCCATGGTTTTT
CCCTCCAGCCGTGTGCACTTTCCAAAAACCAGTCGACGGTTGCCGCAGGC
ACTCATCATCGGTGTGCGAAAATGTGGTACACGGGCGCTGCTGGAGATGC
TCTACCTACATCCGCGGATCCAGA

BO11294.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG33147-PA 1818 CG33147-RA 1..808 17..824 4040 100 Plus
CG32082-PA 3225 CG32082-RA 753..781 211..239 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A-RB 5724 CG33147-RB 1408..2215 17..824 4040 100 Plus
Hs3st-A-RA 5570 CG33147-RA 1408..2215 17..824 4040 100 Plus
CG15772-RB 1691 CG15772-RB 629..791 121..292 185 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18748051..18748463 337..749 2065 100 Plus
2R 25286936 2R 18745917..18746236 17..336 1600 100 Plus
2R 25286936 2R 18748723..18748801 746..824 395 100 Plus
Blast to na_te.dros performed 2015-02-10 05:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..7000 2..295 392 64.9 Plus
roo 9092 roo DM_ROO 9092bp 1059..1129 218..292 177 73.3 Plus

BO11294.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:15 Download gff for BO11294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33147-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:46 Download gff for BO11294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33147-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:53:24 Download gff for BO11294.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1408..2214 17..823 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:30:37 Download gff for BO11294.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1408..2214 17..823 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:30:37 Download gff for BO11294.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18745917..18746236 17..336 100 -> Plus
2R 18748051..18748462 337..748 100 -> Plus
2R 18748726..18748800 749..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:53:24 Download gff for BO11294.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14633422..14633741 17..336 100 -> Plus
arm_2R 14635556..14635967 337..748 100 -> Plus
arm_2R 14636231..14636305 749..823 100   Plus

BO11294.complete Sequence

1849 bp assembled on 2008-01-16

GenBank Submission: FJ632060

> BO11294.complete
GAAGTTATCAGTCGACATGACTGCCGCCAAAAGACGTGCGAGCAGCAGCA
ACAGCAGCGGCAGCAGCAACACTAGCGGCAGCAGTAATGGCAACGAGCAG
CACTCCCAGCAGCAACATCTGCAGCTGCAGCAGCAGCAACAGCAGCATGC
CCAGCCAAACGAGTACCAACAGTTGCTGCAGCATCCCCACCATCACTATC
AGCAACACTACAGCGGCAACAACAACACCAGCGGCAACAACAGCAATAGC
AGCAACACGCAGCAATACCACCAGAGACAGCAGCAACATCAGGCGACATT
GCGCGACTGTTCCGTCAAATTGCCGCTGGATATCCTATGGCTACCGAAAT
CGGCAATGCGGCCGGCGGGTCCTGATACCTCGCCCACGGACTGCATCCTG
GTGGTGGGCGTTTCCCGTCCAAAATTGGCCGTCGTCTTCCTTACGGTCAT
GTTGATCTCTCTGTTCCTCACCTTCCATGTCCTGTACGATAGTGCCGTAT
ACAATATCCAAGCGGCCCAGGCTGTCCACGAAAGGCATCGTCTATCTATG
ACCGCCTCCGCATCGGCTCTGGCATCCTCCTCCTCATCGTCGTCCAATTC
CGGCTCCTCCTTCTCCTCCGCCGGTGGCGCCTCCAATCATCTGCCCGTGT
TCGTAAAGCCCGTGCCCAGCTCCAATCAGCTCAGCCATCCCATGGTTTTT
CCCTCCAGCCGTGTGCACTTTCCAAAAACCAGTCGACGGTTGCCGCAGGC
ACTCATCATCGGTGTGCGAAAATGTGGTACACGGGCGCTGCTGGAGATGC
TCTACCTACATCCGCGGATCCAGAAGGCCGGCGGTGAGGTGCACTTCTTC
GACCGGGACGAGAACTACCTGAAAGGTCTGGAGTGGTACCGCAAGAAGAT
GCCACATTCGTTCCGTGGCCAGATAACCATCGAAAAGAGTCCCAGCTACT
TTGTGTCGCCAGAGGTGCCGGAACGTGTGCGGGCCATGAATGCGAGCATC
AAGCTGCTCCTGATTGTCCGGGAGCCGGTGACCCGGGCCATTTCGGACTA
CACGCAGCTGCGTAGCCATGCGGCCACCGCCATTCTGCCGTTGGCCGAGA
AGGATCCACCGAGTCCGAGGGAGAGTTCTGGCGGTGGGGCAGGTGGTGGT
GGTGCTGGTGGTGGTGGGGGAAGCGGGACCGCAGCTGCCAAGATGCCAAC
ACAATCACTGCTGTATGCCAAACTGCAGTCGGCCCGTGGCTATGACAATG
CCCTGTTGGGTGGCAGTGGGGCGGGCGCCAAGGAGACGAAAGGCAAAACG
GTATCTTCGTCTTTGGTCAGGAGACAGGCGTTGGGCAGTGGCGGTGGTGT
CGCTGGAGCTGCGATGACCACGACAACAATGTCGCCAATGGCGAGCGCCG
CCCAAATGGCAGCCAAGTCCTTTGAGGAGCTGGCCATATTTCCCAATGGC
ACCGTTAACGAGGCTTATCGACCGCTCAGCATCTCCATGTACCATGTCCA
CCTCCATCGCTGGCTGGAGGTATTTCCGCGGGAGCAGCTGCTGGTGGTCA
ATGGGGATCGCCTCATCGAAGATCCGGTTTCTCAGCTGAAACGCATCGAG
GCTTTCTTGGGCATTGAGCATCGGGTGAATAGCGAGCACTTTTACTTCAA
TGAGACCAAGGGCTTCTACTGTCTGCGCTATGACAACGGGGATCGCTGCC
TCCGGGAGACGAAGGGCAGGAAGCATCCGCATGTGGATCCCGTGGTGGTC
TCCAGATTGCGAAAGTTCTTCGCCGAGTACAATCAGCGATTTTACGAGCT
GGTCGGCGAGGATCTCGGCTGGCCGGAGGAGGCAAGCTTTCTAGACCAT

BO11294.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A-RB 1818 CG33147-PB 1..1815 17..1831 9075 100 Plus
Hs3st-A-RA 1818 CG33147-PA 1..1815 17..1831 9075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A-RB 5724 CG33147-RB 1408..3222 17..1831 9075 100 Plus
Hs3st-A-RA 5570 CG33147-RA 1408..3222 17..1831 9075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18750801..18751256 963..1418 2280 100 Plus
2R 25286936 2R 18748051..18748463 337..749 2065 100 Plus
2R 25286936 2R 18745917..18746236 17..336 1600 100 Plus
2R 25286936 2R 18748723..18748944 746..967 1110 100 Plus
2R 25286936 2R 18751952..18752173 1610..1831 1110 100 Plus
2R 25286936 2R 18751639..18751833 1417..1611 975 100 Plus
Blast to na_te.dros performed 2014-11-27 11:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..7000 2..295 392 64.9 Plus
roo 9092 roo DM_ROO 9092bp 1059..1129 218..292 177 73.3 Plus

BO11294.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:15 Download gff for BO11294.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1..1818 17..1835 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:07 Download gff for BO11294.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1393..3207 17..1833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:01:51 Download gff for BO11294.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1408..3222 17..1833 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:15 Download gff for BO11294.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1393..3213 17..1838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:56 Download gff for BO11294.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-A-RA 1408..3222 17..1833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:56 Download gff for BO11294.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18745917..18746236 17..336 100 -> Plus
2R 18748051..18748462 337..748 100 -> Plus
2R 18748726..18748941 749..964 100 -> Plus
2R 18750803..18751254 965..1416 100 -> Plus
2R 18751639..18751832 1417..1610 100 -> Plus
2R 18751953..18752173 1611..1833 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:01:51 Download gff for BO11294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14633422..14633741 17..336 100 -> Plus
arm_2R 14635556..14635967 337..748 100 -> Plus
arm_2R 14636231..14636446 749..964 100 -> Plus
arm_2R 14638308..14638759 965..1416 100 -> Plus
arm_2R 14639144..14639337 1417..1610 100 -> Plus
arm_2R 14639458..14639678 1611..1833 99   Plus

BO11294.pep Sequence

Translation from 16 to 1849

> BO11294.pep
MTAAKRRASSSNSSGSSNTSGSSNGNEQHSQQQHLQLQQQQQQHAQPNEY
QQLLQHPHHHYQQHYSGNNNTSGNNSNSSNTQQYHQRQQQHQATLRDCSV
KLPLDILWLPKSAMRPAGPDTSPTDCILVVGVSRPKLAVVFLTVMLISLF
LTFHVLYDSAVYNIQAAQAVHERHRLSMTASASALASSSSSSSNSGSSFS
SAGGASNHLPVFVKPVPSSNQLSHPMVFPSSRVHFPKTSRRLPQALIIGV
RKCGTRALLEMLYLHPRIQKAGGEVHFFDRDENYLKGLEWYRKKMPHSFR
GQITIEKSPSYFVSPEVPERVRAMNASIKLLLIVREPVTRAISDYTQLRS
HAATAILPLAEKDPPSPRESSGGGAGGGGAGGGGGSGTAAAKMPTQSLLY
AKLQSARGYDNALLGGSGAGAKETKGKTVSSSLVRRQALGSGGGVAGAAM
TTTTMSPMASAAQMAAKSFEELAIFPNGTVNEAYRPLSISMYHVHLHRWL
EVFPREQLLVVNGDRLIEDPVSQLKRIEAFLGIEHRVNSEHFYFNETKGF
YCLRYDNGDRCLRETKGRKHPHVDPVVVSRLRKFFAEYNQRFYELVGEDL
GWPEEASFLDH

BO11294.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-A-PB 605 CG33147-PB 1..605 1..605 3138 100 Plus
Hs3st-A-PA 605 CG33147-PA 1..605 1..605 3138 100 Plus
Hs3st-B-PB 384 CG7890-PB 30..240 145..353 400 44 Plus
Hs3st-B-PA 384 CG7890-PA 30..240 145..353 400 44 Plus
Hs3st-B-PB 384 CG7890-PB 226..384 452..603 336 43.8 Plus
Hs3st-B-PA 384 CG7890-PA 226..384 452..603 336 43.8 Plus
sfl-PB 1048 CG8339-PB 915..1028 485..596 166 28.9 Plus