Clone BO11295 Report

Search the DGRC for BO11295

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptEct4-RE
Protein status:BO11295.pep: Imported from assembly
Sequenced Size:3190

Clone Sequence Records

BO11295.3prime Sequence

782 bp (727 high quality bases) assembled on 2006-04-19

> BO11295.3prime
ATGGTCTAGAAAGCTTGCCGCTGGAGCCGCTGGGGGACTCTGGTTAGAGC
TTGAGCTTGAATTTGAGTTGGGAGTAGAAGAAGTAGTAGATGTAGTACTC
GTTGGCCCACCTTGTCCGCTGCCATTGGCCGCCACCATCAGGCCATCCAC
CACACTGCCCGTAACGCCGCCACCACCTCCTCCTCCAGTTCCTGCTCCTG
ATCCGGCGCCTGCTCCTCCGCTCTGGTAGTCGGAGTCGTTGCTGTGCATT
CTTTGGTATGAGACCGAACCGGGGGTGCCGGGCACCATCGCCGCAATGCG
ATCGATATTCTTTTCGCCGCGCAAAAATCTTTCGAGCTTATCGATGCATG
CGTCCTGGTAGTCGTGGATCCAATTAACACCGTTAAAATGGGCCACACTG
CGCATGTCCTCGGGAAGTCGCTCCACCTCGGGCCAATCGAATTGCTGGTC
TATGATGGGTATAATGTTGCAGTTCGAGTTCAGGGCAGCCACGATTTCGC
GATGCACCCAGTCCTTGCAGTCCTCGTCGTTAATGCAGCGGTGCAGGGCA
TCGGGAGTTAATACTAAGACAAAGTTCTTTGCCTGTCGAATACTGTTCAA
TAGGCCGTTGTCAAATTTGCCCGCCTCCAGGCGCTCCACGTCGATGAAAA
CGGAGAAACCACGAAGCTGCAGATGCACCTTGAGAAGACTGGCTAGTTGG
GAGCCGTTTGATCGCCTATAGCTAACGAAAACATCTAGCGTCTTGGCCAT
GTTCTCCTCCGACGAGCTGGGCAGCGAATTCT

BO11295.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7915-PB 3159 Ect4-RB 2393..3156 782..19 3820 100 Minus
CG7915-PC 4083 Ect4-RC 2471..3142 782..111 3360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
Ect4-RE 4907 CG43119-RE 2746..3509 782..19 3820 100 Minus
Ect4-RJ 3837 CG43119-RJ 2945..3616 782..111 3360 100 Minus
Ect4-RI 6741 CG43119-RI 4938..5609 782..111 3360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8105438..8105749 330..19 1560 100 Minus
3L 28110227 3L 8104878..8105060 680..498 915 100 Minus
3L 28110227 3L 8105127..8105296 498..329 850 100 Minus
3L 28110227 3L 8104715..8104822 782..675 540 100 Minus
Blast to na_te.dros performed on 2015-02-03 17:13:53 has no hits.

BO11295.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:16 Download gff for BO11295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7915-PA 2471..3237 18..782 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:48 Download gff for BO11295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7915-PB 2393..3159 18..782 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:33:27 Download gff for BO11295.3prime
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 2746..3509 19..782 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:00:25 Download gff for BO11295.3prime
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 2746..3509 19..782 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:00:25 Download gff for BO11295.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8104715..8104818 679..782 100 -> Minus
3L 8104880..8105059 499..678 100 -> Minus
3L 8105127..8105296 329..498 100 -> Minus
3L 8105440..8105749 19..328 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:33:27 Download gff for BO11295.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8097815..8097918 679..782 100 -> Minus
arm_3L 8097980..8098159 499..678 100 -> Minus
arm_3L 8098227..8098396 329..498 100 -> Minus
arm_3L 8098540..8098849 19..328 100   Minus

BO11295.5prime Sequence

773 bp (692 high quality bases) assembled on 2006-04-19

> BO11295.5prime
GAAGTTATCAGTCGACATGTCCAATCAGGCACCCTGGCCCGTTCGCAAGG
GCATCTTCCGCTCGAGCGGTCAGTCGGATTTCACGCCAACCCGATCGCCT
AGTCCCATTGTGGAGATGCCATTATCCCCGCCGCCGGTGGCCACGCCCTC
GAATAGATTTGGAATCAATTCACCGCTCTCCCCACCGCCGCAGCCTATTC
AAGTGGTGGCGGGTTCAACGACAGCCACTACCATGTCCACTGCGTCCGCT
GCCAGAGTGTCTGGTGCAGCTGCCTCCACTTCATCCTCGTCCTCCTCTTC
TTCGTCGTCGCAGTGCTCGTCGCAAACCTCGTCGAGTTCTAGTTCGCACA
CCAGAGTACGTAAAAGTTCTAACCCGCCCCCACAGCCAATTACCAGTTGT
CCACTGTCGCCACCACCACCACCACCACCACAGCAACAACAACAACTACC
ACAACAACTGCCACCTCCAACGCCCATCAACAACACCAACCACTCAGCAA
TTACAACACCCAATCACAACAATAACCACAACTGCAATCAAATGAGAAAT
GTACGCGAAATTCCCATTGAGGTGGAGCAGAGCAAGGAAGCCCTCTCACT
CCGCACCGGCGACATCACACAGCAGGCGAGCAACAATGTGGCGGCCTCCA
GTATTACGGTGCAAAGTGAGAATTTCTCCGCGGACAAGAAGGCGATATCC
CAGTCGCAACAATCGCAGACGATGACCTCCAACGGGATCATCAGTCAGGA
GAAACATGTATCCTCCGCCTCGC

BO11295.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7915-PB 3159 Ect4-RB 1..757 17..773 3760 99.8 Plus
CG7915-PC 4083 Ect4-RC 646..835 584..773 925 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ect4-RE 4907 CG43119-RE 354..1110 17..773 3770 99.9 Plus
Ect4-RJ 3837 CG43119-RJ 1120..1309 584..773 935 99.5 Plus
Ect4-RI 6741 CG43119-RI 3113..3302 584..773 935 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8101992..8102562 17..587 2855 100 Plus
3L 28110227 3L 8102891..8103079 585..773 930 99.5 Plus
Blast to na_te.dros performed on 2015-02-13 01:07:18 has no hits.

BO11295.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:17 Download gff for BO11295.5prime
Subject Subject Range Query Range Percent Splice Strand
Ect4-PB 1..757 17..773 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:49 Download gff for BO11295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7915-PB 1..757 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:06:17 Download gff for BO11295.5prime
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 354..1110 17..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:19 Download gff for BO11295.5prime
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 354..1110 17..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:19 Download gff for BO11295.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8101992..8102561 17..586 100 -> Plus
3L 8102893..8103079 587..773 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:06:17 Download gff for BO11295.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8095092..8095661 17..586 100 -> Plus
arm_3L 8095993..8096179 587..773 99   Plus

BO11295.complete Sequence

3190 bp assembled on 2010-01-06

GenBank Submission: KX794391

> BO11295.complete
GAAGTTATCAGTCGACATGTCCAATCAGGCACCCTGGCCCGTTCGCAAGG
GCATCTTCCGCTCGAGCGGTCAGTCGGATTTCACGCCAACCCGATCGCCT
AGTCCCATTGTGGAGATGCCATTATCCCCGCCGCCGGTGGCCACGCCCTC
GAATAGATTTGGAATCAATTCACCGCTCTCCCCACCGCCGCAGCCTATTC
AAGTGGTGGCGGGTTCAACGACAGCCACTACCATGTCCACTGCGTCCGCT
GCCAGAGTGTCTGGTGCAGCTGCCTCCACTTCATCCTCGTCCTCCTCTTC
TTCGTCGTCGCAGTGCTCGTCGCAAACCTCGTCGAGTTCTAGTTCGCACA
CCAGAGTACGTAAAAGTTCTAACCCGCCCCCACAGCCAATTACCAGTTGT
CCACTGTCGCCACCACCACCACCACCACCACAGCAACAACAACAACTACC
ACAACAACTGCCACCTCCAACGCCCATCAACAACACCAACCACTCAGCAA
TTACAACACCCAATCACAACAATAACCACAACTGCAATCAAATGAGAAAT
GTACGCGAAATTCCCATTGAGGTGGAGCAGAGCAAGGAAGCCCTCTCACT
CCGCACCGGCGACATCACACAGCAGGCGAGCAACAATGTGGCGGCCTCCA
GTATTACGGTGCAAAGTGAGAATTTCTCCGCGGACAAGAAGGCGATATCC
CAGTCGCAGCAATCGCAGACGATGACCTCCAACGGGATCATCAGTCAGGA
GAAACATGTATCCTCCGCCTCGCAGGCCAACTACTCGATGTCGCACAAGG
GCGTTTCCAGTACCGGCAGTAGCATGATCACCAGCTCCTCGCAAATGTCC
GCGATGAATGGCCAGATGCTGAAGCTCGCCGATCTCAAGTTGGATGACCT
CAAGTCGCTGACAGCTGGCAGTGGGCAGCAGGAGATCGAGCAGACCATCA
ACAAGTATTCCAATATGCTGACCTCAATAGTGAGCTCCCTGCAAGAAGAT
GAGCGAGGTGGTAGTGCCATAACCGTCCACGATGTTGGTGGCAAGAAGTC
TCAGTACCTGGAGAAGATCAACGAAGTCATTCGTCGAGCTTGGGCAGTGC
CCACACATGGCCACGAGCTGGGCTACTCATTGTGCAATTCCCTGCGCCAA
AGTGGCGGCCTCGATCTTCTCATGAAGAACTGCGTTAAGCCCGATCTCCA
GTTTTCCTCCGCACAGCTTCTTGAGCAGTGCCTAACCACCGAGAACCGCA
AACATGTGGTGGATAATGGTCTGGATAAGGTGGTCAATGTGGCCTGTGTC
TGCACAAAGAATTCCAATATGGAGCACTCCCGCGTGGGCACTGGCATCCT
GGAGCATCTGTTCAAACACTCCGAGGGCACCTGTTCGGATGTGATAAGGC
TAGGTGGTCTGGATGCCGTGCTCTTTGAGTGCCGCACCAGTGATTTGGAA
ACTCTGCGACACTGCGCTAGTGCACTGGCAAATTTATCTCTATATGGTGG
AGCCGAGAATCAGGAGGAGATGATCCTACGCAAGGTGCCCATGTGGTTGT
TCCCATTGGCCTTCCACAACGATGATAACATCAAGTACTATGCCTGCTTG
GCCATTGCAGTGCTGGTAGCCAACAAGGAGATTGAAGCCGAGGTGCTGAA
GTCTGGATGCTTGGATTTGGTGGAACCCTTTGTCACCTCCCACGACCCCT
CGGCTTTTGCGAGATCCAATCTGGCACATGCCCACGGGCAAAGCAAACAT
TGGCTGAAAAGATTGGTTCCAGTTTTGAGTTCCAATCGCGAAGAGGCCCG
CAATCTGGCTGCCTTCCATTTTTGCATGGAGGCGGGCATCAAGAGGGAGC
AGGGTAACACCGACATCTTCCGCGAGATCAACGCTATTGAAGCTTTGAAA
AATGTGGCCAGCTGTCCAAATGCCATTGCATCCAAGTTCGCCGCTCAGGC
TCTGAGATTGATTGGAGAGACAGTTCCGCACAAGCTGTCCCAACAGGTTC
CCTTGTGGTCCGTGGAGGATGTGCAGGAGTGGGTAAAGCAAATCGGTTTC
AATGACTACATCGACAAGTTCAACGAGTCCCAGGTGGACGGGGATCTTTT
ACTGAAGCTCAATCAGGATAACCTCCGGGCTGATATTGGAATCGGTAATG
GAATACTTCTAAAGCGTTTTGAACGCGAGCTGCAAAATCTCAAGCGTATG
GCTGACTACTCATCCAAGGACACGGCCAAGATGCACCAATTTCTCTCGGA
GATCGGTACTGATTACTGCACCTACACGTATGCCATGCTGAATGCTGGAA
TTGACAAGTGTGCACTGCCGCATGTCAATGAGGATATGCTGATGACAGAG
TGTGGCATCCACAACTCGATCCATCGTCTGAGAATTCTCAATGCGGTCAA
AAACTTGGAGAATTCGCTGCCCAGCTCGTCGGAGGAGAACATGGCCAAGA
CGCTAGATGTTTTCGTTAGCTATAGGCGATCAAACGGCTCCCAACTAGCC
AGTCTTCTCAAGGTGCATCTGCAGCTTCGTGGTTTCTCCGTTTTCATCGA
CGTGGAGCGCCTGGAGGCGGGCAAATTTGACAACGGCCTATTGAACAGTA
TTCGACAGGCAAAGAACTTTGTCTTAGTATTAACTCCCGATGCCCTGCAC
CGCTGCATTAACGACGAGGACTGCAAGGACTGGGTGCATCGCGAAATCGT
GGCTGCCCTGAACTCGAACTGCAACATTATACCCATCATAGACCAGCAAT
TCGATTGGCCCGAGGTGGAGCGACTTCCCGAGGACATGCGCAGTGTGGCC
CATTTTAACGGTGTTAATTGGATCCACGACTACCAGGACGCATGCATCGA
TAAGCTCGAAAGATTTTTGCGCGGCGAAAAGAATATCGATCGCATTGCGG
CGATGGTGCCCGGCACCCCCGGTTCGGTCTCATACCAAAGAATGCACAGC
AACGACTCCGACTACCAGAGCGGAGGAGCAGGCGCCGGATCAGGAGCAGG
AACTGGAGGAGGAGGTGGTGGCGGCGTTACGGGCAGTGTGGTGGATGGCC
TGATGGTGGCGGCCAATGGCAGCGGACAAGGTGGGCCAACGAGTACTACA
TCTACTACTTCTTCTACTCCCAACTCAAATTCAAGCTCAAGCTCTAACCA
GAGTCCCCCAGCGGCTCCAGCGGCAAGCTTTCTAGACCAT

BO11295.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
Ect4-RE 3159 CG43119-PE 1..3156 17..3172 15780 100 Plus
Ect4-RJ 3180 CG43119-PJ 646..3142 584..3080 12485 100 Plus
Ect4-RI 5193 CG43119-PI 1678..4174 584..3080 12485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
Ect4-RE 4907 CG43119-RE 354..3509 17..3172 15780 100 Plus
Ect4-RJ 3837 CG43119-RJ 1120..3616 584..3080 12485 100 Plus
Ect4-RI 6741 CG43119-RI 3113..5609 584..3080 12485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8102891..8104822 585..2516 9660 100 Plus
3L 28110227 3L 8101992..8102562 17..587 2855 100 Plus
3L 28110227 3L 8105438..8105749 2861..3172 1560 100 Plus
3L 28110227 3L 8104878..8105060 2511..2693 915 100 Plus
3L 28110227 3L 8105127..8105296 2693..2862 850 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:17:49 has no hits.

BO11295.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-06 09:25:55 Download gff for BO11295.complete
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 335..3490 17..3174 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:51 Download gff for BO11295.complete
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 354..3509 17..3174 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:03 Download gff for BO11295.complete
Subject Subject Range Query Range Percent Splice Strand
Ect4-RE 354..3509 17..3174 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:03 Download gff for BO11295.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8105127..8105296 2693..2862 100 -> Plus
3L 8101992..8102561 17..586 100 -> Plus
3L 8102893..8104818 587..2512 100 -> Plus
3L 8104880..8105059 2513..2692 100 -> Plus
3L 8105440..8105749 2863..3174 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:51 Download gff for BO11295.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8098540..8098849 2863..3174 99   Plus
arm_3L 8095092..8095661 17..586 100 -> Plus
arm_3L 8095993..8097918 587..2512 100 -> Plus
arm_3L 8097980..8098159 2513..2692 100 -> Plus
arm_3L 8098227..8098396 2693..2862 100 -> Plus

BO11295.pep Sequence

Translation from 16 to 3190

> BO11295.pep
MSNQAPWPVRKGIFRSSGQSDFTPTRSPSPIVEMPLSPPPVATPSNRFGI
NSPLSPPPQPIQVVAGSTTATTMSTASAARVSGAAASTSSSSSSSSSSQC
SSQTSSSSSSHTRVRKSSNPPPQPITSCPLSPPPPPPPQQQQQLPQQLPP
PTPINNTNHSAITTPNHNNNHNCNQMRNVREIPIEVEQSKEALSLRTGDI
TQQASNNVAASSITVQSENFSADKKAISQSQQSQTMTSNGIISQEKHVSS
ASQANYSMSHKGVSSTGSSMITSSSQMSAMNGQMLKLADLKLDDLKSLTA
GSGQQEIEQTINKYSNMLTSIVSSLQEDERGGSAITVHDVGGKKSQYLEK
INEVIRRAWAVPTHGHELGYSLCNSLRQSGGLDLLMKNCVKPDLQFSSAQ
LLEQCLTTENRKHVVDNGLDKVVNVACVCTKNSNMEHSRVGTGILEHLFK
HSEGTCSDVIRLGGLDAVLFECRTSDLETLRHCASALANLSLYGGAENQE
EMILRKVPMWLFPLAFHNDDNIKYYACLAIAVLVANKEIEAEVLKSGCLD
LVEPFVTSHDPSAFARSNLAHAHGQSKHWLKRLVPVLSSNREEARNLAAF
HFCMEAGIKREQGNTDIFREINAIEALKNVASCPNAIASKFAAQALRLIG
ETVPHKLSQQVPLWSVEDVQEWVKQIGFNDYIDKFNESQVDGDLLLKLNQ
DNLRADIGIGNGILLKRFERELQNLKRMADYSSKDTAKMHQFLSEIGTDY
CTYTYAMLNAGIDKCALPHVNEDMLMTECGIHNSIHRLRILNAVKNLENS
LPSSSEENMAKTLDVFVSYRRSNGSQLASLLKVHLQLRGFSVFIDVERLE
AGKFDNGLLNSIRQAKNFVLVLTPDALHRCINDEDCKDWVHREIVAALNS
NCNIIPIIDQQFDWPEVERLPEDMRSVAHFNGVNWIHDYQDACIDKLERF
LRGEKNIDRIAAMVPGTPGSVSYQRMHSNDSDYQSGGAGAGSGAGTGGGG
GGGVTGSVVDGLMVAANGSGQGGPTSTTSTTSSTPNSNSSSSSNQSPPAA
PAASFLDH

BO11295.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ect4-PE 1052 CG34373-PE 1..1052 1..1052 5439 100 Plus
Ect4-PI 1730 CG43119-PI 531..1416 166..1046 4307 95 Plus
Ect4-PH 1386 CG34373-PH 187..1072 166..1046 4307 95 Plus
Ect4-PG 1562 CG34373-PG 363..1248 166..1046 4307 95 Plus
Ect4-PF 1360 CG34373-PF 187..1072 166..1046 4307 95 Plus