Clone BO11296 Report

Search the DGRC for BO11296

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG30497-RB
Protein status:BO11296.pep:
Sequenced Size:1714

Clone Sequence Records

BO11296.3prime Sequence

732 bp (640 high quality bases) assembled on 2006-04-19

> BO11296.3prime
ATGGTCTAGAAAGCTTGCCGTGCTCAGCCAGGTGGAGTTGCACGTGCAGA
TGGTGCTGGGGATCACAGGTGCATAGTAGACGCCGTTGGCATAGATGAGT
CCCGGCGGACCGGCCTGTATCTGTATGGTCTGTGGTGCCGCTGTCGCCGT
CTGATCCGCGCTGCTCGTGCAGCACACGGCGGCTGGGGCGGCCTGTTGCA
CATAAATGGTCTGCGCCTGGCCCGTGGGCGGCGCCTGCGGGACAAGGGTC
AGGGTAGTTGCCTGCTGCGCCTGCTGCTGTTGCGTCTGTGTCTGCTGCTG
CTGCTGTTGCTGCTGCGCTGGGTCAAGGAACTGATGCTGACGCTGCTGCT
GCTGCTGCTGCTGATTTTGCTGATGCTGCTGCTGCTGCTGTTGCTGCTGG
TACTTCTCCTGGGCCTGCTGCTGCTGCTGCTTCTCCTGCTTGTTGAAGAG
CACCTGAGCGGCCAGCGACTGGATTAGATGGAGCGATTGGCGCCGCTCGT
GGCCCATTAGACAGACCGTCGACATCTCGACTACCTCGCGTAAATGCATC
AGGTACTGATACTGCAGCGGTTCCTCATCGACGCCCCAGAAATGGTTACG
CAAGTAGGCCTTCCAGCTTGGTGGTCTGCGTATTGATGTCCGGGAAACGA
TGAAGAACCGCGAGCACATGTAACGCTCCAGGGTCTTGATGAGCTGCGAG
TCAACGGCCTTGTAGTTACGCACCATTAAATT

BO11296.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30497-PA 2634 CG30497-RA 2039..2631 611..19 2965 100 Minus
CG30497-PB 1683 CG30497-RB 1088..1680 611..19 2965 100 Minus
CG30497-PC 1590 CG30497-RC 995..1587 611..19 2965 100 Minus
CG30497-PA 2634 CG30497-RA 1925..2002 725..648 315 96.1 Minus
CG30497-PB 1683 CG30497-RB 974..1051 725..648 315 96.1 Minus
CG30497-PC 1590 CG30497-RC 881..958 725..648 315 96.1 Minus
CG30497-PA 2634 CG30497-RA 2004..2039 647..612 180 100 Minus
CG30497-PB 1683 CG30497-RB 1053..1088 647..612 180 100 Minus
CG30497-PC 1590 CG30497-RC 960..995 647..612 180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG45093-RD 5320 CG45093-RD 1346..2059 732..19 3450 99 Minus
CG45093-RC 4324 CG45093-RC 1099..1812 732..19 3450 99 Minus
CG45093-RB 4996 CG45093-RB 1771..2484 732..19 3450 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7740280..7740993 19..732 3400 99 Plus
Blast to na_te.dros performed on 2015-02-10 20:14:25 has no hits.

BO11296.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:18 Download gff for BO11296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-PC 874..1590 16..732 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:50 Download gff for BO11296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-PA 1918..2634 16..732 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:34:48 Download gff for BO11296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 1771..2484 19..732 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:28 Download gff for BO11296.3prime
Subject Subject Range Query Range Percent Splice Strand
CG45093-RB 1771..2484 19..732 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:58:28 Download gff for BO11296.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7740280..7740993 19..732 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:34:48 Download gff for BO11296.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3627785..3628498 19..732 99   Plus

BO11296.5prime Sequence

731 bp (617 high quality bases) assembled on 2006-04-19

> BO11296.5prime
GAAGTTATCAGTCGACATGAAACCGGAAAATCGGCATGAGTCGTACAATG
CAAAGTGCGGGACACTAGACGGAGCCGAACCGTTGTATCATCAACAGCGC
AGCAACAGAATGGACGTCTACCAGATCGACGATGGATTCCACTCGGACGG
CGGCACCGAGACTCCGCCGCCGTCACCCAGTTCTGGGTCATCGATCGCCT
CGACCTCGGACCACGGATCGCTGGAGAGCGTGGACACTGGGGGGACGCAG
CGGCTGGCCGTGCTATCGTTCGAGCAGGTGAGCAAACTGCACGACGTCAT
GGACGAGAAGGTGGCCATCCATGGGCGCGGCAATTTTCCCACACTGGAGG
TGAAGCTCAAGGATCTGGTCAACCTGGTGCGCCGCAAGCTGGAGGCGGAG
GTGAACGCCGGCGGCGCCGGGGTGTTAGTTAAGGACATCCGTCTCAATGG
CGGGGCAGCTAGTCATGTTTTAGCCAGCGAGGATCAGCCGTACAATGACC
TGGACCTGATATTCGCCATCGAGCTGAGTTCGCCACGCGTCTTTGACCGC
GTCAAGGTGGCGGTGCTCAACACCCTGCTGGACTTGATGCCCGAGGGCGT
CTGCAAGCGACGCATCTACACGTGCTCCCTGAAGGAGGCCTACGTGGGCA
AGATGGTCAAGGTGAACAACAACAATGACGGGGATCGCTGGTCCCTCATT
TCGCTGGGCAACTTCGCCGGGGCACAAAAAC

BO11296.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG30497-PB 1683 CG30497-RB 1..697 17..713 3460 99.8 Plus
CG30497-PA 2634 CG30497-RA 989..1648 54..713 3275 99.8 Plus
CG30497-PC 1590 CG30497-RC 1..604 110..713 2995 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG45093-RB 4996 CG45093-RB 805..1518 17..731 3505 99.4 Plus
CG30497-RB 4996 CG30497-RB 805..1518 17..731 3505 99.4 Plus
CG45093-RD 5320 CG45093-RD 417..1093 54..731 3320 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7741246..7741922 731..54 3295 99.4 Minus
2R 25286936 2R 7758035..7758073 55..17 195 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:03:14 has no hits.

BO11296.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:19 Download gff for BO11296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-PB 1..714 17..731 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:52 Download gff for BO11296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-PB 1..714 17..731 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:55 Download gff for BO11296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 798..1518 9..731 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:52:47 Download gff for BO11296.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 798..1518 9..731 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:52:47 Download gff for BO11296.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7741246..7741920 56..731 99 <- Minus
2R 7758035..7758080 9..55 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:55 Download gff for BO11296.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3628751..3629425 56..731 99 <- Minus
arm_2R 3645540..3645585 9..55 91   Minus

BO11296.complete Sequence

1714 bp assembled on 2008-01-16

GenBank Submission: FJ632061

> BO11296.complete
GAAGTTATCAGTCGACATGAAACCGGAAAATCGGCATGAGTCGTACAATG
CAAAGTGCGGGACACTAGACGGAGCCGAACCGTTGTATCATCAACAGCGC
AGCAACAGAATGGACGTCTACCAGATCGACGATGGATTCCACTCGGACGG
CGGCACCGAGACTCCGCCGCCGTCACCCAGTTCTGGGTCATCGATCGCCT
CGACCTCGGACCACGGATCGCTGGAGAGCGTGGACACTGGGGGGACGCAG
CGGCTGGCCGTGCTATCGTTCGAGCAGGTGAGCAAACTGCACGACGTCAT
GGACGAGAAGGTGGCCATCCATGGGCGCGGCAATTTTCCCACACTGGAGG
TGAAGCTCAAGGATCTGGTCAACCTGGTGCGCCGCAAGCTGGAGGCGGAG
GTGAACGCCGGCGGCGCCGGGGTGTTAGTTAAGGACATCCGTCTCAATGG
CGGGGCAGCTAGTCATGTTTTAGCCAGCGAGGATCAGCCGTACAATGACC
TGGACCTGATATTCGCCATCGAGCTGAGTTCGCCACGCGTCTTTGACCGC
GTCAAGGTGGCGGTGCTCAACACCCTGCTGGACTTGATGCCCGAGGGCGT
CTGCAAGCGACGCATCTACACGTGCTCCCTGAAGGAGGCCTACGTGGGCA
AGATGGTCAAGGTGAACAACAACAATGACGGCGATCGCTGGTCCCTCATT
TCGCTGGGCAACTCGCCGGGCCACAAGAACGTCGAGCTGAAGTTCGTGGA
CACGATGAGGCGCCAGTTCGAGTTCTCGGTGGACTCGTTCCAGATTGTGC
TGGACTCGCTGCTGCTCTTCTACGACTGCGCCGCTCTGCCCATCTCGGAG
AACTTCTATCCAACGGTGGTCGGCGAATCGGTCTACGGGGACTTCCAGGA
GGCACTCTACCATTTGCAAAAGAAACTGATCTCAACGCGTCAGCCGGAGG
AGATACGAGGCGGCGGCCTGCTCAAGTACTGCAATCTATTGGTGCGTAAC
TACAAGGCCGTCGACTCGCAGCTCATCAAGACCCTGGAGCGCTACATGTG
CTCGCGCTTCTTCATCGATTTCCCGGACATCAATACGCAGACCACCAAGC
TGGAGGCCTACTTGCGTAACCATTTCTGGGGCGTCGATGAGGAACCGCTG
CAGTATCAGTACCTGATGCATTTACGCGAGGTAGTCGAGATGTCGACGGT
CTGTCTAATGGGCCACGAGCGGCGCCAATCGCTCCATCTAATCCAGTCGC
TGGCCGCTCAGGTGCTCTTCAACAAGCAGGAGAAGCAGCAGCAGCAGCAG
GCCCAGGAGAAGTACCAGCAGCAACAGCAGCAGCAGCAGCATCAGCAAAA
TCAGCAGCAGCAGCAGCAGCAGCGTCAGCATCAGTTCCTTGACCCAGCGC
AGCAGCAACAGCAGCAGCAGCAGACACAGACGCAACAGCAGCAGGCGCAG
CAGGCAACTACCCTGACCCTTGTCCCGCAGGCGCCGCCCACGGGCCAGGC
GCAGACCATTTATGTGCAACAGGCCGCCCCAGCCGCCGTGTGCTGCACGA
GCAGCGCGGATCAGACGGCGACAGCGGCACCACAGACCATACAGATACAG
GCCGGTCCGCCGGGACTCATCTATGCCAACGGCGTCTACTATGCACCTGT
GATCCCCAGCACCATCTGCACGTGCAACTCCACCTGGCTGAGCACGGCAA
GCTTTCTAGACCAT

BO11296.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30497-RB 1683 CG30497-PB 1..1680 17..1696 8400 100 Plus
CG30497-RA 2634 CG30497-PA 989..2631 54..1696 8215 100 Plus
CG30497-RD 1590 CG30497-PD 1..1587 110..1696 7935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG45093-RB 4996 CG45093-RB 805..2484 17..1696 8400 100 Plus
CG30497-RB 4996 CG30497-RB 805..2484 17..1696 8400 100 Plus
CG45093-RD 5320 CG45093-RD 417..2059 54..1696 8215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7740280..7741922 1696..54 8215 100 Minus
2R 25286936 2R 7758035..7758073 55..17 195 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:52:13 has no hits.

BO11296.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:16 Download gff for BO11296.complete
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 1..1683 17..1699 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:49 Download gff for BO11296.complete
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 644..2323 17..1698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:18 Download gff for BO11296.complete
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 805..2484 17..1698 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:16 Download gff for BO11296.complete
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 637..2323 9..1696 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:37 Download gff for BO11296.complete
Subject Subject Range Query Range Percent Splice Strand
CG30497-RB 805..2484 17..1698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:37 Download gff for BO11296.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7740277..7741920 56..1698 99 <- Minus
2R 7758035..7758073 17..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:18 Download gff for BO11296.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3627782..3629425 56..1698 99 <- Minus
arm_2R 3645540..3645578 17..55 100   Minus

BO11296.pep Sequence

Translation from 16 to 1714

> BO11296.pep
MKPENRHESYNAKCGTLDGAEPLYHQQRSNRMDVYQIDDGFHSDGGTETP
PPSPSSGSSIASTSDHGSLESVDTGGTQRLAVLSFEQVSKLHDVMDEKVA
IHGRGNFPTLEVKLKDLVNLVRRKLEAEVNAGGAGVLVKDIRLNGGAASH
VLASEDQPYNDLDLIFAIELSSPRVFDRVKVAVLNTLLDLMPEGVCKRRI
YTCSLKEAYVGKMVKVNNNNDGDRWSLISLGNSPGHKNVELKFVDTMRRQ
FEFSVDSFQIVLDSLLLFYDCAALPISENFYPTVVGESVYGDFQEALYHL
QKKLISTRQPEEIRGGGLLKYCNLLVRNYKAVDSQLIKTLERYMCSRFFI
DFPDINTQTTKLEAYLRNHFWGVDEEPLQYQYLMHLREVVEMSTVCLMGH
ERRQSLHLIQSLAAQVLFNKQEKQQQQQAQEKYQQQQQQQQHQQNQQQQQ
QQRQHQFLDPAQQQQQQQQTQTQQQQAQQATTLTLVPQAPPTGQAQTIYV
QQAAPAAVCCTSSADQTATAAPQTIQIQAGPPGLIYANGVYYAPVIPSTI
CTCNSTWLSTASFLDH

BO11296.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG30497-PB 560 CG30497-PB 1..560 1..560 2912 100 Plus
CG30497-PA 877 CG30497-PA 330..877 13..560 2841 99.8 Plus
CG30497-PD 529 CG30497-PD 1..529 32..560 2739 100 Plus
CG30497-PC 529 CG30497-PC 1..529 32..560 2739 100 Plus
Cfp1-PB 643 CG17446-PB 527..641 402..502 188 44.4 Plus