Clone Sequence Records
BO11296.3prime Sequence
732 bp (640 high quality bases) assembled on 2006-04-19
> BO11296.3prime
ATGGTCTAGAAAGCTTGCCGTGCTCAGCCAGGTGGAGTTGCACGTGCAGA
TGGTGCTGGGGATCACAGGTGCATAGTAGACGCCGTTGGCATAGATGAGT
CCCGGCGGACCGGCCTGTATCTGTATGGTCTGTGGTGCCGCTGTCGCCGT
CTGATCCGCGCTGCTCGTGCAGCACACGGCGGCTGGGGCGGCCTGTTGCA
CATAAATGGTCTGCGCCTGGCCCGTGGGCGGCGCCTGCGGGACAAGGGTC
AGGGTAGTTGCCTGCTGCGCCTGCTGCTGTTGCGTCTGTGTCTGCTGCTG
CTGCTGTTGCTGCTGCGCTGGGTCAAGGAACTGATGCTGACGCTGCTGCT
GCTGCTGCTGCTGATTTTGCTGATGCTGCTGCTGCTGCTGTTGCTGCTGG
TACTTCTCCTGGGCCTGCTGCTGCTGCTGCTTCTCCTGCTTGTTGAAGAG
CACCTGAGCGGCCAGCGACTGGATTAGATGGAGCGATTGGCGCCGCTCGT
GGCCCATTAGACAGACCGTCGACATCTCGACTACCTCGCGTAAATGCATC
AGGTACTGATACTGCAGCGGTTCCTCATCGACGCCCCAGAAATGGTTACG
CAAGTAGGCCTTCCAGCTTGGTGGTCTGCGTATTGATGTCCGGGAAACGA
TGAAGAACCGCGAGCACATGTAACGCTCCAGGGTCTTGATGAGCTGCGAG
TCAACGGCCTTGTAGTTACGCACCATTAAATT
BO11296.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30497-PA | 2634 | CG30497-RA | 2039..2631 | 611..19 | 2965 | 100 | Minus |
CG30497-PB | 1683 | CG30497-RB | 1088..1680 | 611..19 | 2965 | 100 | Minus |
CG30497-PC | 1590 | CG30497-RC | 995..1587 | 611..19 | 2965 | 100 | Minus |
CG30497-PA | 2634 | CG30497-RA | 1925..2002 | 725..648 | 315 | 96.1 | Minus |
CG30497-PB | 1683 | CG30497-RB | 974..1051 | 725..648 | 315 | 96.1 | Minus |
CG30497-PC | 1590 | CG30497-RC | 881..958 | 725..648 | 315 | 96.1 | Minus |
CG30497-PA | 2634 | CG30497-RA | 2004..2039 | 647..612 | 180 | 100 | Minus |
CG30497-PB | 1683 | CG30497-RB | 1053..1088 | 647..612 | 180 | 100 | Minus |
CG30497-PC | 1590 | CG30497-RC | 960..995 | 647..612 | 180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45093-RD | 5320 | CG45093-RD | 1346..2059 | 732..19 | 3450 | 99 | Minus |
CG45093-RC | 4324 | CG45093-RC | 1099..1812 | 732..19 | 3450 | 99 | Minus |
CG45093-RB | 4996 | CG45093-RB | 1771..2484 | 732..19 | 3450 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7740280..7740993 | 19..732 | 3400 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:14:25 has no hits.
BO11296.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:18 Download gff for
BO11296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30497-PC | 874..1590 | 16..732 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:50 Download gff for
BO11296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30497-PA | 1918..2634 | 16..732 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:34:48 Download gff for
BO11296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30497-RB | 1771..2484 | 19..732 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:28 Download gff for
BO11296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45093-RB | 1771..2484 | 19..732 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:58:28 Download gff for
BO11296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7740280..7740993 | 19..732 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:34:48 Download gff for
BO11296.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3627785..3628498 | 19..732 | 99 | | Plus |
BO11296.5prime Sequence
731 bp (617 high quality bases) assembled on 2006-04-19
> BO11296.5prime
GAAGTTATCAGTCGACATGAAACCGGAAAATCGGCATGAGTCGTACAATG
CAAAGTGCGGGACACTAGACGGAGCCGAACCGTTGTATCATCAACAGCGC
AGCAACAGAATGGACGTCTACCAGATCGACGATGGATTCCACTCGGACGG
CGGCACCGAGACTCCGCCGCCGTCACCCAGTTCTGGGTCATCGATCGCCT
CGACCTCGGACCACGGATCGCTGGAGAGCGTGGACACTGGGGGGACGCAG
CGGCTGGCCGTGCTATCGTTCGAGCAGGTGAGCAAACTGCACGACGTCAT
GGACGAGAAGGTGGCCATCCATGGGCGCGGCAATTTTCCCACACTGGAGG
TGAAGCTCAAGGATCTGGTCAACCTGGTGCGCCGCAAGCTGGAGGCGGAG
GTGAACGCCGGCGGCGCCGGGGTGTTAGTTAAGGACATCCGTCTCAATGG
CGGGGCAGCTAGTCATGTTTTAGCCAGCGAGGATCAGCCGTACAATGACC
TGGACCTGATATTCGCCATCGAGCTGAGTTCGCCACGCGTCTTTGACCGC
GTCAAGGTGGCGGTGCTCAACACCCTGCTGGACTTGATGCCCGAGGGCGT
CTGCAAGCGACGCATCTACACGTGCTCCCTGAAGGAGGCCTACGTGGGCA
AGATGGTCAAGGTGAACAACAACAATGACGGGGATCGCTGGTCCCTCATT
TCGCTGGGCAACTTCGCCGGGGCACAAAAAC
BO11296.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30497-PB | 1683 | CG30497-RB | 1..697 | 17..713 | 3460 | 99.8 | Plus |
CG30497-PA | 2634 | CG30497-RA | 989..1648 | 54..713 | 3275 | 99.8 | Plus |
CG30497-PC | 1590 | CG30497-RC | 1..604 | 110..713 | 2995 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45093-RB | 4996 | CG45093-RB | 805..1518 | 17..731 | 3505 | 99.4 | Plus |
CG30497-RB | 4996 | CG30497-RB | 805..1518 | 17..731 | 3505 | 99.4 | Plus |
CG45093-RD | 5320 | CG45093-RD | 417..1093 | 54..731 | 3320 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7741246..7741922 | 731..54 | 3295 | 99.4 | Minus |
2R | 25286936 | 2R | 7758035..7758073 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:03:14 has no hits.
BO11296.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:19 Download gff for
BO11296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30497-PB | 1..714 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:52 Download gff for
BO11296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30497-PB | 1..714 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:55 Download gff for
BO11296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30497-RB | 798..1518 | 9..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:52:47 Download gff for
BO11296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30497-RB | 798..1518 | 9..731 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:52:47 Download gff for
BO11296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7741246..7741920 | 56..731 | 99 | <- | Minus |
2R | 7758035..7758080 | 9..55 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:55 Download gff for
BO11296.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3628751..3629425 | 56..731 | 99 | <- | Minus |
arm_2R | 3645540..3645585 | 9..55 | 91 | | Minus |
BO11296.complete Sequence
1714 bp assembled on 2008-01-16
GenBank Submission: FJ632061
> BO11296.complete
GAAGTTATCAGTCGACATGAAACCGGAAAATCGGCATGAGTCGTACAATG
CAAAGTGCGGGACACTAGACGGAGCCGAACCGTTGTATCATCAACAGCGC
AGCAACAGAATGGACGTCTACCAGATCGACGATGGATTCCACTCGGACGG
CGGCACCGAGACTCCGCCGCCGTCACCCAGTTCTGGGTCATCGATCGCCT
CGACCTCGGACCACGGATCGCTGGAGAGCGTGGACACTGGGGGGACGCAG
CGGCTGGCCGTGCTATCGTTCGAGCAGGTGAGCAAACTGCACGACGTCAT
GGACGAGAAGGTGGCCATCCATGGGCGCGGCAATTTTCCCACACTGGAGG
TGAAGCTCAAGGATCTGGTCAACCTGGTGCGCCGCAAGCTGGAGGCGGAG
GTGAACGCCGGCGGCGCCGGGGTGTTAGTTAAGGACATCCGTCTCAATGG
CGGGGCAGCTAGTCATGTTTTAGCCAGCGAGGATCAGCCGTACAATGACC
TGGACCTGATATTCGCCATCGAGCTGAGTTCGCCACGCGTCTTTGACCGC
GTCAAGGTGGCGGTGCTCAACACCCTGCTGGACTTGATGCCCGAGGGCGT
CTGCAAGCGACGCATCTACACGTGCTCCCTGAAGGAGGCCTACGTGGGCA
AGATGGTCAAGGTGAACAACAACAATGACGGCGATCGCTGGTCCCTCATT
TCGCTGGGCAACTCGCCGGGCCACAAGAACGTCGAGCTGAAGTTCGTGGA
CACGATGAGGCGCCAGTTCGAGTTCTCGGTGGACTCGTTCCAGATTGTGC
TGGACTCGCTGCTGCTCTTCTACGACTGCGCCGCTCTGCCCATCTCGGAG
AACTTCTATCCAACGGTGGTCGGCGAATCGGTCTACGGGGACTTCCAGGA
GGCACTCTACCATTTGCAAAAGAAACTGATCTCAACGCGTCAGCCGGAGG
AGATACGAGGCGGCGGCCTGCTCAAGTACTGCAATCTATTGGTGCGTAAC
TACAAGGCCGTCGACTCGCAGCTCATCAAGACCCTGGAGCGCTACATGTG
CTCGCGCTTCTTCATCGATTTCCCGGACATCAATACGCAGACCACCAAGC
TGGAGGCCTACTTGCGTAACCATTTCTGGGGCGTCGATGAGGAACCGCTG
CAGTATCAGTACCTGATGCATTTACGCGAGGTAGTCGAGATGTCGACGGT
CTGTCTAATGGGCCACGAGCGGCGCCAATCGCTCCATCTAATCCAGTCGC
TGGCCGCTCAGGTGCTCTTCAACAAGCAGGAGAAGCAGCAGCAGCAGCAG
GCCCAGGAGAAGTACCAGCAGCAACAGCAGCAGCAGCAGCATCAGCAAAA
TCAGCAGCAGCAGCAGCAGCAGCGTCAGCATCAGTTCCTTGACCCAGCGC
AGCAGCAACAGCAGCAGCAGCAGACACAGACGCAACAGCAGCAGGCGCAG
CAGGCAACTACCCTGACCCTTGTCCCGCAGGCGCCGCCCACGGGCCAGGC
GCAGACCATTTATGTGCAACAGGCCGCCCCAGCCGCCGTGTGCTGCACGA
GCAGCGCGGATCAGACGGCGACAGCGGCACCACAGACCATACAGATACAG
GCCGGTCCGCCGGGACTCATCTATGCCAACGGCGTCTACTATGCACCTGT
GATCCCCAGCACCATCTGCACGTGCAACTCCACCTGGCTGAGCACGGCAA
GCTTTCTAGACCAT
BO11296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30497-RB | 1683 | CG30497-PB | 1..1680 | 17..1696 | 8400 | 100 | Plus |
CG30497-RA | 2634 | CG30497-PA | 989..2631 | 54..1696 | 8215 | 100 | Plus |
CG30497-RD | 1590 | CG30497-PD | 1..1587 | 110..1696 | 7935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45093-RB | 4996 | CG45093-RB | 805..2484 | 17..1696 | 8400 | 100 | Plus |
CG30497-RB | 4996 | CG30497-RB | 805..2484 | 17..1696 | 8400 | 100 | Plus |
CG45093-RD | 5320 | CG45093-RD | 417..2059 | 54..1696 | 8215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7740280..7741922 | 1696..54 | 8215 | 100 | Minus |
2R | 25286936 | 2R | 7758035..7758073 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:52:13 has no hits.
BO11296.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:16 Download gff for
BO11296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30497-RB | 1..1683 | 17..1699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:49 Download gff for
BO11296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30497-RB | 644..2323 | 17..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:18 Download gff for
BO11296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30497-RB | 805..2484 | 17..1698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:16 Download gff for
BO11296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30497-RB | 637..2323 | 9..1696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:37 Download gff for
BO11296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30497-RB | 805..2484 | 17..1698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:37 Download gff for
BO11296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7740277..7741920 | 56..1698 | 99 | <- | Minus |
2R | 7758035..7758073 | 17..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:18 Download gff for
BO11296.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3627782..3629425 | 56..1698 | 99 | <- | Minus |
arm_2R | 3645540..3645578 | 17..55 | 100 | | Minus |
BO11296.pep Sequence
Translation from 16 to 1714
> BO11296.pep
MKPENRHESYNAKCGTLDGAEPLYHQQRSNRMDVYQIDDGFHSDGGTETP
PPSPSSGSSIASTSDHGSLESVDTGGTQRLAVLSFEQVSKLHDVMDEKVA
IHGRGNFPTLEVKLKDLVNLVRRKLEAEVNAGGAGVLVKDIRLNGGAASH
VLASEDQPYNDLDLIFAIELSSPRVFDRVKVAVLNTLLDLMPEGVCKRRI
YTCSLKEAYVGKMVKVNNNNDGDRWSLISLGNSPGHKNVELKFVDTMRRQ
FEFSVDSFQIVLDSLLLFYDCAALPISENFYPTVVGESVYGDFQEALYHL
QKKLISTRQPEEIRGGGLLKYCNLLVRNYKAVDSQLIKTLERYMCSRFFI
DFPDINTQTTKLEAYLRNHFWGVDEEPLQYQYLMHLREVVEMSTVCLMGH
ERRQSLHLIQSLAAQVLFNKQEKQQQQQAQEKYQQQQQQQQHQQNQQQQQ
QQRQHQFLDPAQQQQQQQQTQTQQQQAQQATTLTLVPQAPPTGQAQTIYV
QQAAPAAVCCTSSADQTATAAPQTIQIQAGPPGLIYANGVYYAPVIPSTI
CTCNSTWLSTASFLDH
BO11296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30497-PB | 560 | CG30497-PB | 1..560 | 1..560 | 2912 | 100 | Plus |
CG30497-PA | 877 | CG30497-PA | 330..877 | 13..560 | 2841 | 99.8 | Plus |
CG30497-PD | 529 | CG30497-PD | 1..529 | 32..560 | 2739 | 100 | Plus |
CG30497-PC | 529 | CG30497-PC | 1..529 | 32..560 | 2739 | 100 | Plus |
Cfp1-PB | 643 | CG17446-PB | 527..641 | 402..502 | 188 | 44.4 | Plus |