Clone BO11312 Report

Search the DGRC for BO11312

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:113
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptMvl-RB
Protein status:BO11312.pep:
Sequenced Size:1822

Clone Sequence Records

BO11312.3prime Sequence

840 bp (742 high quality bases) assembled on 2006-04-19

> BO11312.3prime
ATGGTCTAGAAAGCTTGCCGCATCCTCACCAGCCAAGCCCTCCGGTTCCT
GGTCCGAACTCGTGGCAATCCTGGCGTACGTCGAGTTGGCGTTCTTTATC
GAAAAGCTGTTCTGGCTTGGCAACACAAAACGCTGCACCCACCGGCTGTT
CATCAAACGCTGATTGCCCATGCAGGCAGCCATGTGTATCACAAGGTAGA
GGTTGAACAGTATATACAAAATGGCAAAAATACAGACTAGTGCCAGCAAG
CCGCCTTTAATTTCCATATTCTCTACTTGCACCACCACAAAGTACAAATT
AACGCCAATCACTACAATGGTGAGCAGTATGGATACGATTTTGTTGCCCA
GTCCATTAACAAACTCGCCCATTATGGCGGCGCACGAGGTGAAGGCGATG
GTGGGTATGGCAGCGAATGGCAGCTGGAGCGACATCACCGCATTCAGGAT
ATCGTTCATGCTAGTCAAATCTTCCATCTTGCTGAACATGGCCAGGCAGA
AGGTGGGAATAATGGCAATGCAGCGCGTGACCAGCACGCGACACCAGCGC
GGCCACTGCAGATTCAAGAAGCCTTCCATTGAGAACTGACCGGCATAGGT
GCCCGTCATGGTGGAACTCTGGCCAGCAGCTAGAATGCCCACACCCCAAA
TGTACATGGCGACAGCTCCAAAATGTGCAGCCAAGGAAAAGTCCGCCCTT
GTATAGATCTGCATCGATGATCGCGGTTCCATTTACATTGTCCACAAAAG
ACATTTTGGCATCTTCGTACATCGACTTGTCTTTACACACTTCAACCACA
TCATTATTAGTTTTGCCATACATGCCATGGGCAAACACAG

BO11312.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3671-PB 1791 Mvl-RB 1135..1788 672..19 3270 100 Minus
CG3671-PA 1791 Mvl-RA 1135..1788 672..19 3270 100 Minus
CG3671-PC 1461 Mvl-RC 1135..1458 672..349 1620 100 Minus
CG3671-PB 1791 Mvl-RB 968..1137 840..671 850 100 Minus
CG3671-PA 1791 Mvl-RA 968..1137 840..671 850 100 Minus
CG3671-PC 1461 Mvl-RC 968..1137 840..671 850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Mvl-RH 2653 CG3671-RH 1025..1845 840..19 4085 99.9 Minus
Mvl-RE 2790 CG3671-RE 1341..2161 840..19 4085 99.9 Minus
Mvl-RD 4782 CG3671-RD 3154..3974 840..19 4085 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21055963..21056410 349..797 2195 99.8 Plus
3R 32079331 3R 21055785..21055902 232..349 590 100 Plus
3R 32079331 3R 21055632..21055723 142..233 460 100 Plus
3R 32079331 3R 21055344..21055416 70..142 365 100 Plus
3R 32079331 3R 21052191..21052245 19..73 275 100 Plus
3R 32079331 3R 21056466..21056511 795..840 230 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:40:23 has no hits.

BO11312.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:35 Download gff for BO11312.3prime
Subject Subject Range Query Range Percent Splice Strand
Mvl-PB 968..1791 18..840 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:26:17 Download gff for BO11312.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3671-PA 968..1791 18..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:41:48 Download gff for BO11312.3prime
Subject Subject Range Query Range Percent Splice Strand
Mvl-RD 3154..3978 13..840 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:46 Download gff for BO11312.3prime
Subject Subject Range Query Range Percent Splice Strand
Mvl-RD 3154..3978 13..840 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:46 Download gff for BO11312.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21055964..21056409 350..796 99 <- Plus
3R 21056468..21056511 797..840 100   Plus
3R 21055787..21055902 234..349 100 <- Plus
3R 21052187..21052242 13..70 94 <- Plus
3R 21055345..21055415 71..141 100 <- Plus
3R 21055632..21055723 142..233 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:41:48 Download gff for BO11312.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16877909..16877964 13..70 94 <- Plus
arm_3R 16881067..16881137 71..141 100 <- Plus
arm_3R 16881354..16881445 142..233 100 <- Plus
arm_3R 16881509..16881624 234..349 100 <- Plus
arm_3R 16881686..16882131 350..796 99 <- Plus
arm_3R 16882190..16882233 797..840 100   Plus

BO11312.5prime Sequence

825 bp (765 high quality bases) assembled on 2006-04-19

> BO11312.5prime
GAAGTTATCAGTCGACATGTCTTCGAATGAGGCCTACCACGAGCCGGGTG
CCGGTGGAGATGGACCGGGCGGATCGTCTGGCGCATCCGGCGGAGGAAGT
CAGCGGAGCAACCAGCTGCACCACCAGCAGATACTCAACGAGACGACCTA
CCTGAAACCCGCCGCCAAGCAGGCCTACTTTAGCGACGAGAAGGTCCTCA
TACCCGACGATGATAGCACAAACGTGGGTTTCAGCTTTCGCAAGCTGTGG
GCCTTCACGGGACCCGGTTTTCTTATGTCCATTGCGTATCTGGACCCCGG
CAACATCGAATCCGATATGCAGTCTGGTGCGGCGGCCAAGTACAAGATCT
TGTGGGTCTTGCTGTGGGCCACAGTCCTAGGTCTGCTCATGCAACGCTTG
GCTGCAAGACTGGGCGTGGTTACAGGCCTGCATCTGGCCGAGATGTGCTA
CAGACAGTACAAGCGTCTGCCACGTTGGATACTGTGGATAATGATAGAGA
TAGCCATTATTGGATCCGACATGCAGGAGGTCATTGGCACGGCCATTGCC
ATATACCTGCTGTCCAACAAAGTAGTGCCTTTGTGGGGCGGAGTGTTGAT
CACCATTGTTGACACGTTCACGTTCCTGTTTCTGGACAAGTACGGTCTAC
GCAAGCTGGAGTTCCTATTCGGCACCCTCATCACCATTATGGCTGTCTCA
TTCGGCTATGAGTACATTGTATCAGCCCCTAATCAAGGAGAAGTTCTCGA
GGGAATGTTTGTGCCCTGGTGCTCTAACTGCAATTCGAATGTGTTGCTGC
AGGCCGTGGGTGTCGTGGGTGCTGT

BO11312.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3671-PB 1791 Mvl-RB 1..809 17..825 4045 100 Plus
CG3671-PA 1791 Mvl-RA 1..809 17..825 4045 100 Plus
CG3671-PC 1461 Mvl-RC 1..809 17..825 4045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Mvl-RF 2503 CG3671-RF 372..1182 15..825 4055 100 Plus
Mvl-RE 2790 CG3671-RE 372..1182 15..825 4055 100 Plus
Mvl-RG 2221 CG3671-RG 70..879 16..825 4050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21058259..21058468 225..16 1050 100 Minus
3R 32079331 3R 21058016..21058200 408..224 925 100 Minus
3R 32079331 3R 21057787..21057953 573..407 835 100 Minus
3R 32079331 3R 21057576..21057714 712..574 695 100 Minus
3R 32079331 3R 21056738..21056852 825..711 575 100 Minus
Blast to na_te.dros performed on 2015-02-12 07:03:28 has no hits.

BO11312.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:37 Download gff for BO11312.5prime
Subject Subject Range Query Range Percent Splice Strand
Mvl-PB 1..809 17..825 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:26:18 Download gff for BO11312.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3671-PC 1..809 17..825 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:48:03 Download gff for BO11312.5prime
Subject Subject Range Query Range Percent Splice Strand
Mvl-RE 372..1182 15..825 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:30 Download gff for BO11312.5prime
Subject Subject Range Query Range Percent Splice Strand
Mvl-RE 372..1182 15..825 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:30 Download gff for BO11312.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21056738..21056850 713..825 100 <- Minus
3R 21057576..21057714 574..712 100 <- Minus
3R 21057787..21057951 409..573 100 <- Minus
3R 21058016..21058200 224..408 100 <- Minus
3R 21058261..21058477 8..223 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:48:03 Download gff for BO11312.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16882460..16882572 713..825 100 <- Minus
arm_3R 16883298..16883436 574..712 100 <- Minus
arm_3R 16883509..16883673 409..573 100 <- Minus
arm_3R 16883738..16883922 224..408 100 <- Minus
arm_3R 16883983..16884199 8..223 98   Minus

BO11312.complete Sequence

1822 bp assembled on 2008-01-16

GenBank Submission: FJ632062

> BO11312.complete
GAAGTTATCAGTCGACATGTCTTCGAATGAGGCCTACCACGAGCCGGGTG
CCGGTGGAGATGGACCGGGCGGATCGTCTGGCGCATCCGGCGGAGGAAGT
CAGCGGAGCAACCAGCTGCACCACCAGCAGATACTCAACGAGACGACCTA
CCTGAAACCCGCCGCCAAGCAGGCCTACTTTAGCGACGAGAAGGTCCTCA
TACCCGACGATGATAGCACAAACGTGGGTTTCAGCTTTCGCAAGCTGTGG
GCCTTCACGGGACCCGGTTTTCTTATGTCCATTGCGTATCTGGACCCCGG
CAACATCGAATCCGATATGCAGTCTGGTGCGGCGGCCAAGTACAAGATCT
TGTGGGTCTTGCTGTGGGCCACAGTCCTAGGTCTGCTCATGCAACGCTTG
GCTGCAAGACTGGGCGTGGTTACAGGCCTGCATCTGGCCGAGATGTGCTA
CAGACAGTACAAGCGTCTGCCACGTTGGATACTGTGGATAATGATAGAGA
TAGCCATTATTGGATCCGACATGCAGGAGGTCATTGGCACGGCCATTGCC
ATATACCTGCTGTCCAACAAAGTAGTGCCTTTGTGGGGCGGAGTGTTGAT
CACCATTGTTGACACGTTCACGTTCCTGTTTCTGGACAAGTACGGTCTAC
GCAAGCTGGAGTTCCTATTCGGCACCCTCATCACCATTATGGCTGTCTCA
TTCGGCTATGAGTACATTGTATCAGCCCCTAATCAAGGAGAAGTTCTCGA
GGGAATGTTTGTGCCCTGGTGCTCTAACTGCAATTCGAATGTGTTGCTGC
AGGCCGTGGGTGTCGTGGGTGCTGTTATTATGCCGCACAATCTCTACCTG
CATTCCGCCTTGGTTAAGTCCCGCGATATAGACCGTCGCCAGACAAAGAA
AGTTAGTGAGGCGAATTTTTACTTCTTCATCGAGGCGTCGGTAGCCTTGT
TTGTGTCCTTCATCATTAACCTGTTTGTGGTGGCTGTGTTTGCCCATGGC
ATGTATGGCAAAACTAATAATGATGTGGTTGAAGTGTGTAAAGACAAGTC
GATGTACGAAGATGCCAAAATGTCTTTTGTGGACAATGTAAATGGAACCG
CGATCATCGATGCAGATCTATACAAGGGCGGACTTTTCCTTGGCTGCACA
TTTGGAGCTGTCGCCATGTACATTTGGGGTGTGGGCATTCTAGCTGCTGG
CCAGAGTTCCACCATGACGGGCACCTATGCCGGTCAGTTCTCAATGGAAG
GCTTCTTGAATCTGCAGTGGCCGCGCTGGTGTCGCGTGCTGGTCACGCGC
TGCATTGCCATTATTCCCACCTTCTGCCTGGCCATGTTCAGCAAGATGGA
AGATTTGACTAGCATGAACGATATCCTGAATGCGGTGATGTCGCTCCAGC
TGCCATTCGCTGCCATACCCACCATCGCCTTCACCTCGTGCGCCGCCATA
ATGGGCGAGTTTGTTAATGGACTGGGCAACAAAATCGTATCCATACTGCT
CACCATTGTAGTGATTGGCGTTAATTTGTACTTTGTGGTGGTGCAAGTAG
AGAATATGGAAATTAAAGGCGGCTTGCTGGCACTAGTCTGTATTTTTGCC
ATTTTGTATATACTGTTCAACCTCTACCTTGTGATACACATGGCTGCCTG
CATGGGCAATCAGCGTTTGATGAACAGCCGGTGGGTGCAGCGTTTTGTGT
TGCCAAGCCAGAACAGCTTTTCGATAAAGAACGCCAACTCGACGTACGCC
AGGATTGCCACGAGTTCGGACCAGGAACCGGAGGGCTTGGCTGGTGAGGA
TGCGGCAAGCTTTCTAGACCAT

BO11312.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
Mvl-RH 1920 CG3671-PH 1..1788 17..1804 8940 100 Plus
Mvl-RE 1791 CG3671-PE 1..1788 17..1804 8940 100 Plus
Mvl-RD 1791 CG3671-PD 1..1788 17..1804 8940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
Mvl-RE 2790 CG3671-RE 372..2161 15..1804 8950 100 Plus
Mvl-RH 2653 CG3671-RH 57..1845 16..1804 8945 100 Plus
Mvl-RD 4782 CG3671-RD 2186..3974 16..1804 8945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21055963..21056410 1474..1027 2240 100 Minus
3R 32079331 3R 21058259..21058468 225..16 1050 100 Minus
3R 32079331 3R 21058016..21058200 408..224 925 100 Minus
3R 32079331 3R 21057787..21057953 573..407 835 100 Minus
3R 32079331 3R 21056466..21056628 1029..867 815 100 Minus
3R 32079331 3R 21056695..21056852 868..711 790 100 Minus
3R 32079331 3R 21057576..21057714 712..574 695 100 Minus
3R 32079331 3R 21055785..21055902 1591..1474 590 100 Minus
3R 32079331 3R 21055632..21055723 1681..1590 460 100 Minus
3R 32079331 3R 21055344..21055416 1753..1681 365 100 Minus
3R 32079331 3R 21052191..21052245 1804..1750 275 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:32:07 has no hits.

BO11312.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:17 Download gff for BO11312.complete
Subject Subject Range Query Range Percent Splice Strand
Mvl-RA 1..1791 17..1805 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:29 Download gff for BO11312.complete
Subject Subject Range Query Range Percent Splice Strand
Mvl-RA 374..2161 17..1806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:40 Download gff for BO11312.complete
Subject Subject Range Query Range Percent Splice Strand
Mvl-RE 374..2161 17..1806 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:17 Download gff for BO11312.complete
Subject Subject Range Query Range Percent Splice Strand
Mvl-RA 372..2165 15..1810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:29 Download gff for BO11312.complete
Subject Subject Range Query Range Percent Splice Strand
Mvl-RE 374..2161 17..1806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:29 Download gff for BO11312.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21057576..21057714 574..712 100 <- Minus
3R 21057787..21057951 409..573 100 <- Minus
3R 21056695..21056850 713..868 100 <- Minus
3R 21058016..21058200 224..408 100 <- Minus
3R 21058261..21058467 17..223 100   Minus
3R 21056468..21056626 869..1027 100 <- Minus
3R 21052187..21052242 1753..1806 96 <- Minus
3R 21055345..21055415 1682..1752 100 <- Minus
3R 21055632..21055723 1590..1681 100 <- Minus
3R 21055787..21055902 1474..1589 100 <- Minus
3R 21055964..21056409 1028..1473 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:40 Download gff for BO11312.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16882417..16882572 713..868 100 <- Minus
arm_3R 16883298..16883436 574..712 100 <- Minus
arm_3R 16883509..16883673 409..573 100 <- Minus
arm_3R 16883738..16883922 224..408 100 <- Minus
arm_3R 16883983..16884189 17..223 100   Minus
arm_3R 16882190..16882348 869..1027 100 <- Minus
arm_3R 16877909..16877964 1753..1806 96 <- Minus
arm_3R 16881067..16881137 1682..1752 100 <- Minus
arm_3R 16881354..16881445 1590..1681 100 <- Minus
arm_3R 16881509..16881624 1474..1589 100 <- Minus
arm_3R 16881686..16882131 1028..1473 100 <- Minus

BO11312.pep Sequence

Translation from 16 to 1822

> BO11312.pep
MSSNEAYHEPGAGGDGPGGSSGASGGGSQRSNQLHHQQILNETTYLKPAA
KQAYFSDEKVLIPDDDSTNVGFSFRKLWAFTGPGFLMSIAYLDPGNIESD
MQSGAAAKYKILWVLLWATVLGLLMQRLAARLGVVTGLHLAEMCYRQYKR
LPRWILWIMIEIAIIGSDMQEVIGTAIAIYLLSNKVVPLWGGVLITIVDT
FTFLFLDKYGLRKLEFLFGTLITIMAVSFGYEYIVSAPNQGEVLEGMFVP
WCSNCNSNVLLQAVGVVGAVIMPHNLYLHSALVKSRDIDRRQTKKVSEAN
FYFFIEASVALFVSFIINLFVVAVFAHGMYGKTNNDVVEVCKDKSMYEDA
KMSFVDNVNGTAIIDADLYKGGLFLGCTFGAVAMYIWGVGILAAGQSSTM
TGTYAGQFSMEGFLNLQWPRWCRVLVTRCIAIIPTFCLAMFSKMEDLTSM
NDILNAVMSLQLPFAAIPTIAFTSCAAIMGEFVNGLGNKIVSILLTIVVI
GVNLYFVVVQVENMEIKGGLLALVCIFAILYILFNLYLVIHMAACMGNQR
LMNSRWVQRFVLPSQNSFSIKNANSTYARIATSSDQEPEGLAGEDAASFL
DH

BO11312.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
Mvl-PH 639 CG3671-PH 1..600 1..600 3078 99.5 Plus
Mvl-PE 596 CG3671-PE 1..596 1..596 3076 100 Plus
Mvl-PD 596 CG3671-PD 1..596 1..596 3076 100 Plus
Mvl-PB 596 CG3671-PB 1..596 1..596 3076 100 Plus
Mvl-PG 607 CG3671-PG 1..585 1..585 2992 99.1 Plus