Clone Sequence Records
BO11321.3prime Sequence
855 bp (822 high quality bases) assembled on 2006-04-19
> BO11321.3prime
ATGGTCTAGAAAGCTTGCCTTCCTTCTTTTCGAGCCCCCAGTTGATTGAG
CTTTGGGGCGCTGCGTTTTCCGCATGCTGCGCTTGCGGTTTTCGCTTTTC
CTCTCTGCGTTCTCTTCGTTGCGCTTTTTAATGAACTCCAGTCGCATGCG
AGACTTGACAATTTGCTCGGGGCGGCGCATCTCCTTGTCGTTTCCGGTCA
GTCGCTTCTTAAGTTCTAGCTTTAAGTTGTGCCGCGCATGACGACTGACT
GGGTAGCGCTGGGCATGGCTCAACGGCTTGGCGTTTTCGTCATCACTACC
TGCATTTTCGCGCTGCAGCTGGTCCTCGATCTTAGACTTCTCCTTCCACT
CAGCATAACGACCTGTTTTAAAGGAGGCAGGAATCCACGCACCGGACTCG
GTCCGAATTTTGTTGGCTCGCGGATCTTGTACAGAGACCATTTTTTTCTT
AATTCGGTCCCACTTCTTAAGGCCGGGCTTGTGCTTCACTTCCTGGGATA
AGTCGCGGTCCGACACCGAAAACTCGGCGTTCTGCGCCTGCCGCTCAAAG
TTGTTAATGGCCAGACCATCCTCTGTGTGCTTGTCTGCCGACTGGTACGG
CACATAGTGATCCTCGTCCTTGCTGTTTATCTTCCGCTTTTTCTTCTTTG
GCTTGTCCTTGTAAAGGGCGTCCATGTTCTGGAGCCTCTTGGGCGCAACG
ACTTTATTGAAAGTACTACTAATAGCTTCCTCGTCGGCGGTGGGCATTCT
GCCTGAGCTTGGGTTGAGCGCCTCGATCGTTTTCTTTTCCTCGTCTATGT
CCTCTTCTGCGCGCTGCTGCCTAAACTTGTTGATTACTTCCGCATGCTGC
ATTCG
BO11321.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-PA | 2484 | CG32344-RA | 1645..2481 | 855..19 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-RA | 2694 | CG32344-RA | 1710..2546 | 855..19 | 4185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 321932..322768 | 19..855 | 4185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:54:45 has no hits.
BO11321.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:50 Download gff for
BO11321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-PA | 1645..2484 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:26:38 Download gff for
BO11321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-PA | 1645..2484 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:53:56 Download gff for
BO11321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 1710..2546 | 19..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:01 Download gff for
BO11321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 1710..2546 | 19..855 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:01 Download gff for
BO11321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 321932..322768 | 19..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:53:56 Download gff for
BO11321.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 321932..322768 | 19..855 | 100 | | Plus |
BO11321.5prime Sequence
807 bp (803 high quality bases) assembled on 2006-04-19
> BO11321.5prime
GAAGTTATCAGTCGACATGCGTAAGAAGCAGGCGGATGAAATACCAGGCT
TTCCATCACTGGACAACGATGCCGGCACCAGCGACCGGGGCGCCGACATT
CTCAAGTCCAAGTCCAAGAAGAACAAGAGTGGTGGATTCCAGTCGATGGG
CCTGGGCTTCGAGCTGATAAAGGGCATCACCAAGCGGGGTTACAAGGTTC
CCACCCCCATACAGCGGAAAACGATTCCGCTGATCCTGGAGGGACGCGAT
GTGGTGGCAATGGCCAAGACGGGCTCTGGCAAGACGGCCTGCTTTCTGAT
TCCGCTCTTTGAAAAGCTACAGAGGCGCGAGCCCACAAAGGGGGCCCGTG
CCCTGATCCTGTCTCCGACGCGCGAACTGGCTGTGCAGACGTATAAGTTC
ATAAAGGAGCTGGGCCGCTTTATGGAACTGAAGAGCATTCTGGTGCTAGG
TGGCGACTCCATGGACTCACAGTTCTCGGCCATACATACCTGTCCGGACG
TAATTGTTGCAACGCCAGGTCGTTTTCTTCATTTGTGCGTAGAAATGGAC
TTGAAGCTAAATTCCATAGAGTACGTGGTGTTTGATGAAGCCGATCGACT
CTTCGAGATGGGCTTCGGCGAGCAACTGAACGAAACGTTGCACAGATTGC
CATCGTCCCGGCAGACGGTCATGTTTTCAGCCACGCTGCCAAAACTGCTA
GTAGAGTTCGCCCGTGCCGGACTGAACGACCCAGTGCTCATTCGTTTAGA
CGTCGAATCCAAGCTCCCGGATGCGCTGGCTCTAAAGTTTCTGTACTGTC
GACCAGA
BO11321.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-PA | 2484 | CG32344-RA | 1..791 | 17..807 | 3955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-RA | 2694 | CG32344-RA | 66..856 | 17..807 | 3955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 324049..324599 | 569..19 | 2755 | 100 | Minus |
| 3L | 28110227 | 3L | 323757..323997 | 807..567 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:05:11 has no hits.
BO11321.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:03:51 Download gff for
BO11321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-PA | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:26:40 Download gff for
BO11321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-PA | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:48:36 Download gff for
BO11321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 66..855 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:39 Download gff for
BO11321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 66..855 | 17..806 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:39 Download gff for
BO11321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 323758..323994 | 570..806 | 100 | <- | Minus |
| 3L | 324049..324607 | 9..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:48:36 Download gff for
BO11321.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 323758..323994 | 570..806 | 100 | <- | Minus |
| arm_3L | 324049..324607 | 9..569 | 99 | | Minus |
BO11321.complete Sequence
2515 bp assembled on 2008-01-16
GenBank Submission: FJ632063
> BO11321.complete
GAAGTTATCAGTCGACATGCGTAAGAAGCAGGCGGATGAAATACCAGGCT
TTCCATCACTGGACAACGATGCCGGCACCAGCGACCGGGGCGCCGACATT
CTCAAGTCCAAGTCCAAGAAGAACAAGAGTGGTGGATTCCAGTCGATGGG
CCTGGGCTTCGAGCTGATAAAGGGCATCACCAAGCGGGGTTACAAGGTTC
CCACCCCCATACAGCGGAAAACGATTCCGCTGATCCTGGAGGGACGCGAT
GTGGTGGCAATGGCCAAGACGGGCTCTGGCAAGACGGCCTGCTTTCTGAT
TCCGCTCTTTGAAAAGCTACAGAGGCGCGAGCCCACAAAGGGGGCCCGTG
CCCTGATCCTGTCTCCGACGCGCGAACTGGCTGTGCAGACGTATAAGTTC
ATAAAGGAGCTGGGCCGCTTTATGGAACTGAAGAGCATTCTGGTGCTAGG
TGGCGACTCCATGGACTCACAGTTCTCGGCCATACATACCTGTCCGGACG
TAATTGTTGCAACGCCAGGTCGTTTTCTTCATTTGTGCGTAGAAATGGAC
TTGAAGCTAAATTCCATAGAGTACGTGGTGTTTGATGAAGCCGATCGACT
CTTCGAGATGGGCTTCGGCGAGCAACTGAACGAAACGTTGCACAGATTGC
CATCGTCCCGGCAGACGGTCATGTTTTCAGCCACGCTGCCAAAACTGCTA
GTAGAGTTCGCCCGTGCCGGACTGAACGACCCAGTGCTCATTCGTTTAGA
CGTCGAATCCAAGCTCCCGGATGCGCTGGCTCTAAAGTTTCTGTACTGTC
GACCAGACGACCGCTACACAGCACTTGTGGTTCTTCTTAAGTACGTTATT
CCGGTGCAGTCGCAAACCGTGGTGTTCGCCGGTACTCAGCACCATGTCGA
ACTCATTTCGTACATACTTACTGAGGCTGGAATCTCCAACGCCTCAGTCT
ACTCCAGCCTGGATCCAGCTGCACGCAAAATAAACACCGCCAAATTTGTG
AACAAAAAGGTGTCCGTGCTAATAGTCACGGACGTGGCCGCGCGTGGTAT
TGACATTCCCAGTCTAGACTTTGTGGTGAACCTGCACTTCCCGGGTAAAC
CGAAACTGTTTGTCCACCGGGTAGGTCGTTGCGCTCGCGCTGGTCGCACA
GGAACCGCATACTCTATTGTATCCACAGACGACACAGCACATCTACTGGA
TCTGCACTTGTTCTTGAACAGACCCTTTAATATACACGACAGCTCGGCAT
TGGGAACCATTCCGCAAGATTTGCTCGAGGAAGAGCACCTCACAGTGACC
GATATAAAGAAAAGTCACCATATTGCCGGAGTATTGCGCACCAGCGAAAA
CGCCTACAAAAAATACTTGAGTTCCCGACCAGTAGCCTCCACGGATGCCA
ACGCGCGTGTAAAGAAAATTAAATTCTTTGCTCTCAAGCCATTGGAGGAT
TTCTTCACAGCTGCCCCTGTGCTCGCCCAGGCGGCTGAAGCTAGTGGACA
ATCAACAGAGTCGCAGGCAAAGGTGAGCGCCGCAGAGCGCAAGTTGCAGG
AGGAAAAGCACGATATACTGGTGAAGATGCGTAGTTTCCGTCCTGGTGGT
ACCGTTTTTGAACTCAACACCACTCAAAAGTCCACGCAGTTTATCGTTAT
GAAGGAAAAACGAATGCAGCATGCGGAAGTAATCAACAAGTTTAGGCAGC
AGCGCGCAGAAGAGGACATAGACGAGGAAAAGAAAACGATCGAGGCGCTC
AACCCAAGCTCAGGCAGAATGCCCACCGCCGACGAGGAAGCTATTAGTAG
TACTTTCAATAAAGTCGTTGCGCCCAAGAGGCTCCAGAACATGGACGCCC
TTTACAAGGACAAGCCAAAGAAGAAAAAGCGGAAGATAAACAGCAAGGAC
GAGGATCACTATGTGCCGTACCAGTCGGCAGACAAGCACACAGAGGATGG
TCTGGCCATTAACAACTTTGAGCGGCAGGCGCAGAACGCCGAGTTTTCGG
TGTCGGACCGCGACTTATCCCAGGAAGTGAAGCACAAGCCCGGCCTTAAG
AAGTGGGACCGAATTAAGAAAAAAATGGTCTCTGTACAAGATCCGCGAGC
CAACAAAATTCGGACCGAGTCCGGTGCGTGGATTCCTGCCTCCTTTAAAA
CAGGTCGTTATGCTGAGTGGAAGGAGAAGTCTAAGATCGAGGACCAGCTG
CAGCGCGAAAATGCAGGTAGTGATGACGAAAACGCCAAGCCGTTGAGCCA
TGCCCAGCGCTACCCAGTCAGTCGTCATGCGCGGCACAACTTAAAGCTAG
AACTTAAGAAGCGACTGACCGGAAACGACAAGGAGATGCGCCGCCCCGAG
CAAATTGTCAAGTCTCGCATGCGACTGGAGTTCATTAAAAAGCGCAACGA
AGAGAACGCAGAGAGGAAAAGCGAAAACCGCAAGCGCAGCATGCGGAAAA
CGCAGCGCCCCAAAGCTCAATCAACTGGGGGCTCGAAAAGAAGGAAGGCA
AGCTTTCTAGACCAT
BO11321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-RA | 2484 | CG32344-PA | 1..2481 | 17..2497 | 12405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-RA | 2694 | CG32344-RA | 66..2546 | 17..2497 | 12405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 321932..322828 | 2497..1601 | 4485 | 100 | Minus |
| 3L | 28110227 | 3L | 323239..323997 | 1325..567 | 3795 | 100 | Minus |
| 3L | 28110227 | 3L | 324049..324599 | 569..19 | 2755 | 100 | Minus |
| 3L | 28110227 | 3L | 322893..323168 | 1600..1325 | 1380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:59:43 has no hits.
BO11321.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:18 Download gff for
BO11321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 1..2484 | 17..2498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:51 Download gff for
BO11321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 63..2543 | 17..2499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:23 Download gff for
BO11321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 66..2546 | 17..2499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:18 Download gff for
BO11321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 63..2543 | 17..2497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:57 Download gff for
BO11321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 66..2546 | 17..2499 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:57 Download gff for
BO11321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 321930..322828 | 1601..2499 | 99 | <- | Minus |
| 3L | 322893..323168 | 1325..1600 | 100 | <- | Minus |
| 3L | 323240..323994 | 570..1324 | 100 | <- | Minus |
| 3L | 324049..324600 | 17..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:23 Download gff for
BO11321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 322893..323168 | 1325..1600 | 100 | <- | Minus |
| arm_3L | 321930..322828 | 1601..2499 | 99 | <- | Minus |
| arm_3L | 323240..323994 | 570..1324 | 100 | <- | Minus |
| arm_3L | 324049..324600 | 17..569 | 99 | | Minus |
BO11321.pep Sequence
Translation from 16 to 2515
> BO11321.pep
MRKKQADEIPGFPSLDNDAGTSDRGADILKSKSKKNKSGGFQSMGLGFEL
IKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK
LQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMD
SQFSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGF
GEQLNETLHRLPSSRQTVMFSATLPKLLVEFARAGLNDPVLIRLDVESKL
PDALALKFLYCRPDDRYTALVVLLKYVIPVQSQTVVFAGTQHHVELISYI
LTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARGIDIPSL
DFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFL
NRPFNIHDSSALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENAYKKY
LSSRPVASTDANARVKKIKFFALKPLEDFFTAAPVLAQAAEASGQSTESQ
AKVSAAERKLQEEKHDILVKMRSFRPGGTVFELNTTQKSTQFIVMKEKRM
QHAEVINKFRQQRAEEDIDEEKKTIEALNPSSGRMPTADEEAISSTFNKV
VAPKRLQNMDALYKDKPKKKKRKINSKDEDHYVPYQSADKHTEDGLAINN
FERQAQNAEFSVSDRDLSQEVKHKPGLKKWDRIKKKMVSVQDPRANKIRT
ESGAWIPASFKTGRYAEWKEKSKIEDQLQRENAGSDDENAKPLSHAQRYP
VSRHARHNLKLELKKRLTGNDKEMRRPEQIVKSRMRLEFIKKRNEENAER
KSENRKRSMRKTQRPKAQSTGGSKRRKASFLDH
BO11321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-PA | 827 | CG32344-PA | 1..827 | 1..827 | 4201 | 100 | Plus |
| CG9253-PA | 507 | CG9253-PA | 25..408 | 3..389 | 537 | 34.5 | Plus |
| Rs1-PB | 782 | CG2173-PB | 128..518 | 2..396 | 531 | 32.9 | Plus |
| Rs1-PA | 782 | CG2173-PA | 128..518 | 2..396 | 531 | 32.9 | Plus |
| CG6418-PB | 791 | CG6418-PB | 271..646 | 41..421 | 522 | 33.4 | Plus |
