Clone BO11341 Report

Search the DGRC for BO11341

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:113
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG3356-RA
Protein status:BO11341.pep:
Sequenced Size:3400

Clone Sequence Records

BO11341.5prime Sequence

816 bp (779 high quality bases) assembled on 2006-04-19

> BO11341.5prime
GAAGTTATCAGTCGACATGTTCGGATTCGACGGCGAGTACCGCCGCAGGC
CTGTGCAAAGTCTGGGCGGAGCCTCGCACACCTGCGACCGGGACACTGTG
ATCCGGAAGGCGGCCCTGGAGCGCCAGAAGCGCAACGAGCTGCGCCAGAA
GGAGAACGGGGCAGTGGTCCTGCAGTCTTACGCCCGCTCATTCATCCACC
GCCAGCGGCGCAAGCGGGCGGAACGGGAAGTTTTCGACATCTACCTAATG
GGCCACAAGGATGGCATCGTGGAGGACGAGAGCCTTACCTTCCTCTTGCG
GCGCCTCAACTTCTTCTACAGCATCCGGGAGGCCAAGGACAGCGAGCGAC
TGATCGAAGTTTGTCAGCAGATCCTTCGCCAGCCCGCTCGTCTGCTTCAG
CATTCCTCCCCTGACTCATTGTGGCTTCTGAGACTGTGCAAGCTGCTGGA
CACTTGCCTGCTACAGCTTAGCCTGTCGCACACGGCCCAAGCCATTCCCC
TACGCATGCTGGAAACATTTACCACCGTATCCTCTGTCCAGCAATATATG
AAGGATGAGGCTGTGTTGTTTCAGTATATGGAGCGCGTCTTTGGCTTCCT
GATTGCCCGCAATTACTTTGTGCGGCTGCGACGGCTGCTGGACGACAAGT
GTCCGCCGCTGGACGGAGAGACCCTGCATGCCCCGAGTCCGCTGGCTGAG
GCACTGCTTCAGTTGTTGCTACGTCCCCTGGAAGTTGCCAAAAGGGCATC
CGCGGGCGGCCAGATGTCCTCTATGTCGATGGCGGTTTGCCGGAACTTCA
CTCCAGACATCTTGGC

BO11341.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-PA 3369 CG3356-RA 1..800 17..816 3975 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-RA 3956 CG3356-RA 277..1077 16..816 3990 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24198495..24198959 352..816 2310 99.8 Plus
2R 25286936 2R 24198100..24198436 16..352 1685 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:06:26 has no hits.

BO11341.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:21 Download gff for BO11341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-PA 1..800 17..816 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:27:18 Download gff for BO11341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-PA 1..800 17..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:13:26 Download gff for BO11341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 271..1077 9..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:14:35 Download gff for BO11341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 271..1077 9..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:35 Download gff for BO11341.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24198094..24198436 9..352 99 -> Plus
2R 24198496..24198959 353..816 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:13:26 Download gff for BO11341.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20085617..20085959 9..352 99 -> Plus
arm_2R 20086019..20086482 353..816 99   Plus

BO11341.3prime Sequence

733 bp (637 high quality bases) assembled on 2006-04-19

> BO11341.3prime
ATGGTCTAGAAAGCTTGCGCTTAGTTCAAAGCCAGCGCCAGACTGTATGG
CATAGAGCAGCTTTTCGCGCATTTGTTCTACGGTTTTGAAGGGCGGAAGT
TTTAGCAGATTCGTGCAGGTGCTGGCCGTGGGCAGACGTTCCATATCTCC
CGTGTTTTGGATAAAGAAAGGTGGGTCCAGGTCCTTAAAGCCCAACAACG
GTGGCCTCGAGCAGCTGGTGACAAATTTTAGCAGCTGCCGGCGCTGCATA
TCATCGAAACCTTCCAAAACCTCCCAGAATGTCACAATCGAGGGGTGCTC
TGGAGAGAATTCACCGCCGTATTCACAGTGCTTCTTTAGATCCTCCAGGT
CAATGGGTATCTCGGCACCCGAGATGAGTATTTGCAGCTCCTTATTGCTG
AACATGTACAGCCATTCGATGGGCAGGACGTTGGATAGACCCTTTCGGAA
GGCGTTGCAGTGACGACGTATCTGCACGTTAAGCTTGTAGTCGGCAATCA
ATTGCAGGTACTCAATGCGGTTTGAGTTCGTCACGGGAATGCTCTGGCCC
TGAGGCTTTAACTCCACAATCTGCGTCTGACCCAGCGAACTGCTCGCCAC
GGTGAAGTCCAAGTTTAGTTCACTTACATCGCCCGAGTAGTCCTTCAAGT
AAAGTAGATTGCGGTAGAGCTCCGGGTCCAAGGAGGCCAACTGGTGGATG
TCCACATCGGAGTATTTGCCAGCCAGCTTGGTT

BO11341.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-PA 3369 CG3356-RA 2652..3366 733..19 3575 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-RA 3956 CG3356-RA 2929..3643 733..19 3575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24201101..24201651 733..183 2755 100 Minus
2R 25286936 2R 24201708..24201874 185..19 835 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:40:44 has no hits.

BO11341.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:20 Download gff for BO11341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-PA 2652..3369 15..733 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:27:17 Download gff for BO11341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-PA 2652..3369 15..733 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:41:50 Download gff for BO11341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 2929..3652 7..733 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:50 Download gff for BO11341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 2929..3652 7..733 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:50 Download gff for BO11341.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24201101..24201650 184..733 100 -> Minus
2R 24201710..24201883 7..183 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:41:50 Download gff for BO11341.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20088624..20089173 184..733 100 -> Minus
arm_2R 20089233..20089406 7..183 97   Minus

BO11341.complete Sequence

3400 bp assembled on 2008-01-16

GenBank Submission: FJ632065

> BO11341.complete
GAAGTTATCAGTCGACATGTTCGGATTCGACGGCGAGTACCGCCGCAGGC
CTGTGCAAAGTCTGGGCGGAGCCTCGCACACCTGCGACCGGGACACTGTG
ATCCGGAAGGCGGCCCTGGAGCGCCAGAAGCGCAACGAGCTGCGCCAGAA
GGAGAACGGGGCAGTGGTCCTGCAGTCTTACGCCCGCTCATTCATCCACC
GCCAGCGGCGCAAGCGGGCGGAACGGGAAGTTTTCGACATCTACCTAATG
GGCCACAAGGATGGCATCGTGGAGGACGAGAGCCTTACCTTCCTCTTGCG
GCGCCTCAACTTCTTCTACAGCATCCGGGAGGCCAAGGACAGCGAGCGAC
TGATCGAAGTTTGTCAGCAGATCCTTCGCCAGCCCGCTCGTCTGCTTCAG
CATTCCTCCCCTGACTCATTGTGGCTTCTGAGACTGTGCAAGCTGCTGGA
CACTTGCCTGCTACAGCTTAGCCTGTCGCACACGGCCCAAGCCATTCCCC
TACGCATGCTGGAAACATTTACCACCGTATCCTCTGTCCAGCAATATATG
AAGGATGAGGCTGTGTTGTTTCAGTATATGGAGCGCGTCTTTGGCTTCCT
GATTGCCCGCAATTACTTTGTGCGGCTGCGACGGCTGCTGGACGACAAGT
GTCCGCCGCTGGACGGAGAGACCCTGCATGCCCCGAGTCCGCTGGCTGAG
GCACTGCTTCAGTTGTTGCTACGTCCCCTGGAAGTTGCCAAAAGGGCATC
CGCGGGCGGCCAGATGTCCTCTATGTCGATGGCGGTTTGCCGGAACTTCA
CTCGAGACATCTTGGCCACGCCGCACACGGATCCTCTGCGATACTTTGTG
CTACCCTGCTTTGCCCTGAATGTGGACTTCCCATTTGACTTGTTAATGCG
TTCGCTCTACGACGCACTTGAGTCAGCTGGACCAGCAGAATCGGACAGCA
CGTCCAGCCGGCGCAGCTTTCTCTTCTACGGTGTAGAAACAGGCCACAAG
ACTACGCGGATGGACTCGATTTTCTCGTCGTTTCTGCTCAACTCCCTCAT
GGTTCTCGATCGTAGGCAATTGGCCACCCTGCATCAGAGCCCGCTGCTAG
TGATCTACGTCCGCCTCATTGCCGAAATGATGCCCAACATTCTGCAGCTG
CCCAAGTCAACGCTTCGCGGCCATGCTAATGCCCCACATCGTCACAGGGA
CGGCGATGACGATTCCGAGGAATCGGAGGATGAGGATGAAGAGCTGCCAG
CGGCTCGAACCCTGGACTACGATATGGAACAGACTTGCCGGACTAGCGGT
GAACTGAGTGTCAAAGAGCGCGAGTGTCTGCTGGAGTCCATTGCCATACT
GAACGAAACGGAGCGGGTGGACTTTATTGTCCAGCAGCTAGATCCGCACA
TTGAGAACACTCACCTCATCTATGCGCTATGCGAGATCTGTCACAATCTG
ATGATATACAACAAGCATGCGGTCTTCGAGTACAAACTACTCTATACGTT
GGCTTTTACTCCGAAATTCATACGGGCTGTGTGGTTTAAGTTGGCTGCAG
AGTCCACTCAACTAGGTTTCTCAGCTCCACTAACCCTTATTTCCAAGGGT
GTTGTCCCCAAACATCAAGGAGTGGATCGAACTATTCCTCTTTTGGCCAC
TTTCTGCATGCTGTTTGGCCGCCTGCTGCCCACGCTGCATGATGTTGAGT
TCGTGGAGAACAAGTTGCTGCTGCAGGTCCATAGCACCATCAACCACGTG
CGACTGATGCCATTTTCCATAGCGGAAATTATACAAATGTCTAAGACGCT
AAAGGACATCAGTATGGGCCTAGTGGAACTGGCTTTTCCGGAGACCCGTA
GCAATCTGGCCAACTACCGCAAGGTCCTGGGTCACACGGAGGCCGACGAC
AAGAAGTTGCGGCACCAGAAACAAATCTGGGCCAACCTGCTCAATGTGGT
CGTCTTTGTGCTCAACCAGATCCACACTCGCGACCTGCGCTTAGGGTTCT
GTCCGGAGGATCACTGGACCGTCACCAGGCTAGACTTACCACTGGATAGG
CCCACAGATCTTCCGCTGACCCATAGCAGTCGTCTTAGGGGCATTCGACC
CTTTCAGCCGATTCGAGACTTTACTCGGGAGGACTTCGAGAACGGTCCAC
CCATGTCCACGAAACAGATCCGCTCGATAACCATTTTGCGGGAGATCCCC
TTTGTGGTACCCTTCAACAAGCGGGTTAGCATTCTGCAGAGCTTGGTTGC
TGCCAGCAAGATGCGGGTGCAGGGCAATATGCAAGCCTTTCTCCAAGGGC
CCTCCGTTCTGATCACTGTCAGGCGGTCGCATCTTTACGAGGACGCATAC
GACAAGTTACGTCCGGATAATGAGCCGGATCTGCGCTTTAAGTTCCGTAT
ACAGTTTGTTTCCTCGCTCGGACTCGATGAGGCAGGCATCGATGGTGGTG
GAGTTTTTCGCGAGTTTCTTTCGGAACTAATTAAAACTGCCTTTGATCCC
AACCGTGGATTCTTTATGGTAACCACGGACAACAAGCTTTATCCCAATCC
AAATGTCGCCGATCTGTTCGAAGACTATGAGAAACACTACTATTTCATTG
GCCGCATCCTGGGCAAGTCCATATATGAAAACCTTTTGGTCGAACTTCCA
TTGGCCGAGTTCTTCCTAACCAAGCTGGCTGGCAAATACTCCGATGTGGA
CATCCACCAGTTGGCCTCCTTGGACCCGGAGCTCTACCGCAATCTACTTT
ACTTGAAGGACTACTCGGGCGATGTAAGTGAACTAAACTTGGACTTCACC
GTGGCGAGCAGTTCGCTGGGTCAGACGCAGATTGTGGAGTTAAAGCCTCA
GGGCCAGAGCATTCCCGTGACGAACTCAAACCGCATTGAGTACCTGCAAT
TGATTGCCGACTACAAGCTTAACGTGCAGATACGTCGTCACTGCAACGCC
TTCCGAAAGGGTCTATCCAACGTCCTGCCCATCGAATGGCTGTACATGTT
CAGCAATAAGGAGCTGCAAATACTCATCTCGGGTGCCGAGATACCCATTG
ACCTGGAGGATCTAAAGAAGCACTGTGAATACGGCGGTGAATTCTCTCCA
GAGCACCCCTCGATTGTGACATTCTGGGAGGTTTTGGAAGGTTTCGATGA
TATGCAGCGCCGGCAGCTGCTAAAATTTGTCACCAGCTGCTCGAGGCCAC
CGTTGTTGGGCTTTAAGGACCTGGACCCACCTTTCTTTATCCAAAACACG
GGAGATATGGAACGTCTGCCCACGGCCAGCACCTGCACGAATCTGCTAAA
ACTTCCGCCCTTCAAAACCGTAGAACAAATGCGCGAAAAGCTGCTCTATG
CCATACAGTCTGGCGCTGGCTTTGAACTAAGCGCAAGCTTTCTAGACCAT

BO11341.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-RA 3369 CG3356-PA 1..3366 17..3382 16830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-RA 3956 CG3356-RA 277..3643 16..3382 16835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24199925..24200689 1608..2372 3825 100 Plus
2R 25286936 2R 24198495..24199216 352..1073 3610 100 Plus
2R 25286936 2R 24200951..24201651 2518..3218 3505 100 Plus
2R 25286936 2R 24199276..24199688 1073..1485 2065 100 Plus
2R 25286936 2R 24198100..24198436 16..352 1685 100 Plus
2R 25286936 2R 24201708..24201874 3216..3382 835 100 Plus
2R 25286936 2R 24200747..24200893 2372..2518 735 100 Plus
2R 25286936 2R 24199745..24199866 1486..1607 610 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:38:56 has no hits.

BO11341.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:20 Download gff for BO11341.complete
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 1..3369 17..3386 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:46 Download gff for BO11341.complete
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 225..3585 22..3384 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:06 Download gff for BO11341.complete
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 283..3643 22..3384 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:20 Download gff for BO11341.complete
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 213..3594 9..3394 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:43 Download gff for BO11341.complete
Subject Subject Range Query Range Percent Splice Strand
CG3356-RA 283..3643 22..3384 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:43 Download gff for BO11341.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24198106..24198436 22..352 100 -> Plus
2R 24198496..24199216 353..1073 100 -> Plus
2R 24199277..24199688 1074..1485 100 -> Plus
2R 24199745..24199866 1486..1607 100 -> Plus
2R 24199925..24200689 1608..2372 100 -> Plus
2R 24200748..24200892 2373..2517 100 -> Plus
2R 24200951..24201650 2518..3217 100 -> Plus
2R 24201710..24201874 3218..3384 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:06 Download gff for BO11341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20085629..20085959 22..352 100 -> Plus
arm_2R 20086019..20086739 353..1073 100 -> Plus
arm_2R 20086800..20087211 1074..1485 100 -> Plus
arm_2R 20087268..20087389 1486..1607 100 -> Plus
arm_2R 20087448..20088212 1608..2372 100 -> Plus
arm_2R 20088271..20088415 2373..2517 100 -> Plus
arm_2R 20088474..20089173 2518..3217 100 -> Plus
arm_2R 20089233..20089397 3218..3384 98   Plus

BO11341.pep Sequence

Translation from 16 to 3400

> BO11341.pep
MFGFDGEYRRRPVQSLGGASHTCDRDTVIRKAALERQKRNELRQKENGAV
VLQSYARSFIHRQRRKRAEREVFDIYLMGHKDGIVEDESLTFLLRRLNFF
YSIREAKDSERLIEVCQQILRQPARLLQHSSPDSLWLLRLCKLLDTCLLQ
LSLSHTAQAIPLRMLETFTTVSSVQQYMKDEAVLFQYMERVFGFLIARNY
FVRLRRLLDDKCPPLDGETLHAPSPLAEALLQLLLRPLEVAKRASAGGQM
SSMSMAVCRNFTRDILATPHTDPLRYFVLPCFALNVDFPFDLLMRSLYDA
LESAGPAESDSTSSRRSFLFYGVETGHKTTRMDSIFSSFLLNSLMVLDRR
QLATLHQSPLLVIYVRLIAEMMPNILQLPKSTLRGHANAPHRHRDGDDDS
EESEDEDEELPAARTLDYDMEQTCRTSGELSVKERECLLESIAILNETER
VDFIVQQLDPHIENTHLIYALCEICHNLMIYNKHAVFEYKLLYTLAFTPK
FIRAVWFKLAAESTQLGFSAPLTLISKGVVPKHQGVDRTIPLLATFCMLF
GRLLPTLHDVEFVENKLLLQVHSTINHVRLMPFSIAEIIQMSKTLKDISM
GLVELAFPETRSNLANYRKVLGHTEADDKKLRHQKQIWANLLNVVVFVLN
QIHTRDLRLGFCPEDHWTVTRLDLPLDRPTDLPLTHSSRLRGIRPFQPIR
DFTREDFENGPPMSTKQIRSITILREIPFVVPFNKRVSILQSLVAASKMR
VQGNMQAFLQGPSVLITVRRSHLYEDAYDKLRPDNEPDLRFKFRIQFVSS
LGLDEAGIDGGGVFREFLSELIKTAFDPNRGFFMVTTDNKLYPNPNVADL
FEDYEKHYYFIGRILGKSIYENLLVELPLAEFFLTKLAGKYSDVDIHQLA
SLDPELYRNLLYLKDYSGDVSELNLDFTVASSSLGQTQIVELKPQGQSIP
VTNSNRIEYLQLIADYKLNVQIRRHCNAFRKGLSNVLPIEWLYMFSNKEL
QILISGAEIPIDLEDLKKHCEYGGEFSPEHPSIVTFWEVLEGFDDMQRRQ
LLKFVTSCSRPPLLGFKDLDPPFFIQNTGDMERLPTASTCTNLLKLPPFK
TVEQMREKLLYAIQSGAGFELSASFLDH

BO11341.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3356-PA 1122 CG3356-PA 1..1122 1..1122 5791 100 Plus
CG5087-PB 1077 CG5087-PB 611..1077 652..1122 799 36.4 Plus
CG5087-PA 1078 CG5087-PA 612..1078 652..1122 799 36.4 Plus
CG9153-PA 1058 CG9153-PA 681..1057 741..1121 468 33.1 Plus
CG9153-PB 1058 CG9153-PB 681..1057 741..1121 468 33.1 Plus