Clone BO11349 Report

Search the DGRC for BO11349

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:113
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptNep1-RA
Protein status:BO11349.pep: Imported from assembly
Sequenced Size:2581

Clone Sequence Records

BO11349.3prime Sequence

809 bp (763 high quality bases) assembled on 2006-04-19

> BO11349.3prime
ATGGTCTAGAAAGCTTGCCCACACGCTGCACTTTTCCGCCGGATTCATGG
TGCTGCCCAGTGGGCATTTGTAGGCGCTGGCAAAGTCGCGAGAATTCGAA
AGTGGTCCCAGGACACGAACGAATCCGGGCGAGTGGACCGCGGAGCGGAT
CTTGGTCAGAGCGTCCTCCGGCCGCATGGATCCGCACCAGATTTGGGCGT
AGTTGAGAAAGAACAGCTGATCGTGGGTCATGTTCAGGCCGGGCAGCTGC
TGCTCCCGCCCATGTAAGGTCTCCCATTTCTTGTAGGCCCTGAAAGCCTG
TTTTAGACCGCCGTTGTCGGCGATGTTCTCGCCCTGCGTCATCCGTCCGT
CCATGAACATGTCCACCTCGTTAATCTTGTAGCGCGAGTACTGATCGATG
ACGCACTGCGTCCGTTCGCGAAAGGCCTCGATGGTGGCATTGTTCCACCA
CTGCATCATGTTGCCCTCCTTGTCGAACTGCCTGCCCTTGTCGTCGAATC
CGTGGGTAATCTCGTGGCCAATGACCACTCCGATTCCGCCGTAATTCAAG
GACTTGGGAAAGTGCTGGCTGTAGAATAGCGGCTGCAGGATGCCAGCAGG
AAATACTATATCGTTTTTATTCGGGTTGTAGAAGGCATTCACCACCGCCG
GTTCGGTGGTCCACTTTTCCTTGTCCACCGGCTGGCGAAGAAGTCGCAGC
ATCTTCTCCGACTCCCATTGCAGAATGCTAAGGACATTGTTGATGAAGTT
GTCGGGGACAATTGTTAAATTCACTACTCCTGCTCCAGCTCGGTGGCTTT
GGTGGAGAA

BO11349.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5905-PB 2550 Nep1-RB 1792..2547 774..19 3755 99.8 Minus
CG5905-PA 2550 Nep1-RA 1792..2547 774..19 3755 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
Nep1-RD 4026 CG5905-RD 2865..3651 804..19 3880 99.6 Minus
Nep1-RC 3557 CG5905-RC 2396..3182 804..19 3880 99.6 Minus
Nep1-RA 3368 CG5905-RA 2207..2993 804..19 3880 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6102953..6103273 608..288 1605 100 Minus
X 23542271 X 6103326..6103596 289..19 1355 100 Minus
X 23542271 X 6102726..6102887 767..606 810 100 Minus
3R 32079331 3R 20653867..20653997 473..603 310 82.4 Plus
Blast to na_te.dros performed on 2015-02-10 20:13:02 has no hits.

BO11349.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:30 Download gff for BO11349.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep1-PA 1759..2550 18..807 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:27:31 Download gff for BO11349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5905-PA 1759..2550 18..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:34:03 Download gff for BO11349.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 2203..2993 19..809 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:15 Download gff for BO11349.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 2203..2993 19..809 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:15 Download gff for BO11349.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6102725..6102887 606..768 99 -> Minus
X 6102956..6103272 289..605 100 -> Minus
X 6103327..6103596 19..288 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:34:03 Download gff for BO11349.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5996758..5996920 606..768 99 -> Minus
arm_X 5996989..5997305 289..605 100 -> Minus
arm_X 5997360..5997629 19..288 100   Minus

BO11349.5prime Sequence

825 bp (728 high quality bases) assembled on 2006-04-19

> BO11349.5prime
GAAGTTATCAGTCGACATGTCCCAGCAACATGAGGCAACAGCGGCGGCCG
CGGAGAAGCCGCTAAATAACGGCTACCTGCAGGCGAATGCGCCGCTGGAG
GAGCTGAGTGCCACGGTGGTGTCGCCACTCCTGGGACAGCAACAGGTGCA
GCACCAGGCGCCACATCAGATGCAGCAGCAACAGCAGCAGCAGCAGCAGA
ACAAGCTGCCCACTGTCGTTTTCCTGGCGCCCGACGGCAGCGGAGGCGTG
GGAATCCAGCGAGGAAATCCAGCGCAGGGCAATCCCGGCATGGTAACGGG
CACCGGCAGCCACAGCGACTGGCTGCTCAAGGAGTCGCAGCAGCGGCGCC
GCCTGCTCGTCCTGGCCATCGCCTTTACCGTTCTGGGCGCGGCCATCGGG
GCACTGGCCATCTACTTCGCCAGCGTCCATCAGCGTTGCCATCTGTATCG
CCTGGAGCCAGACAACGATGACAGACCGAACGGCAGGTGGAACCAGGATT
CGGGATCCGCCCACGAGGGGCAGGATAACATTTGCATGACCCAGGAGTGC
GTGAGAACAGCCGCCTCCCTGCTCTCGGCCATGGACCTCAACTCCGATCC
CTGCGAGGACTTTTTCCAGTACGCGTGCGGCACCTGGAACAAGATGCATC
CCATTCCCGAGGACCGCAGCTCCATCAGCACGTTTGAGGTCCTGTCCGAT
CAGCAGCAGGTTATCCTGCGCGCAGTTCTGGAGGAACCCATCGATGAACG
CGACAACAAAGCCACCATAAAGGCCAAAACCTTCTTCAAGAGCTGCATGG
ATATTCCTCAAATCCGCAAAATCGG

BO11349.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5905-PB 2550 Nep1-RB 1..809 17..825 3995 99.7 Plus
CG5905-PA 2550 Nep1-RA 1..809 17..825 3995 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Nep1-RD 4026 CG5905-RD 1105..1913 17..825 4015 99.8 Plus
Nep1-RC 3557 CG5905-RC 636..1444 17..825 4015 99.8 Plus
Nep1-RA 3368 CG5905-RA 447..1255 17..825 4015 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6096209..6096653 17..461 2210 99.8 Plus
X 23542271 X 6101236..6101368 558..690 650 99.2 Plus
X 23542271 X 6101437..6101556 687..806 600 100 Plus
X 23542271 X 6099578..6099679 459..560 510 100 Plus
Blast to na_te.dros performed 2015-02-13 09:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 7060..7097 752..789 109 76.3 Plus

BO11349.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:31 Download gff for BO11349.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep1-PA 1..809 17..825 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:27:33 Download gff for BO11349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5905-PA 1..809 17..825 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:43:30 Download gff for BO11349.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 437..1255 7..825 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:07:58 Download gff for BO11349.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 437..1255 7..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:07:58 Download gff for BO11349.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6101239..6101366 561..688 99 -> Plus
X 6101439..6101556 689..806 100 -> Plus
X 6101653..6101671 807..825 100   Plus
X 6096199..6096653 7..461 98 -> Plus
X 6099581..6099679 462..560 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:43:30 Download gff for BO11349.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5990232..5990686 7..461 98 -> Plus
arm_X 5993614..5993712 462..560 100 -> Plus
arm_X 5995272..5995399 561..688 99 -> Plus
arm_X 5995472..5995589 689..806 100 -> Plus
arm_X 5995686..5995704 807..825 100   Plus

BO11349.complete Sequence

2581 bp assembled on 2008-08-14

GenBank Submission: FJ632066

> BO11349.complete
GAAGTTATCAGTCGACATGTCCCAGCAACATGAGGCAACAGCGGCGGCCG
CGGAGAAGCCGCTAAATAACGGCTACCTGCAGGCGAATGCGCCGCTGGAG
GAGCTGAGTGCCACGGTGGTGTCGCCACTCCTGGGACAGCAACAGGTGCA
GCACCAGGCGCCACATCAGATGCAGCAGCAACAGCAGCAGCAGCAGCAGA
ACAAGCTGCCCACTGTCGTTTTCCTGGCGCCCGACGGCAGCGGAGGCGTG
GGAATCCAGCGAGGAAATCCAGCGCAGGGCAATCCCGGCATGGTAACGGG
CACCGGCAGCCACAGCGACTGGCTGCTCAAGGAGTCGCAGCAGCGGCGCC
GCCTGCTCGTCCTGGCCATCGCCTTTACCGTTCTGGGCGCGGCCATCGGG
GCACTGGCCATCTACTTCGCCAGCGTCCATCAGCGTTGCCATCTGTATCG
CCTGGAGCCAGACAACGATGACAGACCGAACGGCAGGTGGAACCAGGATT
CGGGATCCGCCCACGAGGGGCAGGATAACATTTGCATGACCCAGGAGTGC
GTGAGAACAGCCGCCTCCCTGCTCTCGGCCATGGACCTCAACTCCGATCC
CTGCGAGGACTTTTTCCAGTACGCGTGCGGCACCTGGAACAAGATGCATC
CCATTCCCGAGGACCGCAGCTCCATCAGCACGTTTGAGGTCCTGTCCGAT
CAGCAGCAGGTTATCCTGCGCGCAGTTCTGGAGGAACCCATCGATGAACG
CGACAACAAAGCCACCATAAAGGCCAAAACCTTCTTCAAGAGCTGCATGG
ATATTCCTCAAATCCGCAAAATCGGAACGGGTCGACTCAAGCAGGTACTG
CAATCCCTGGGCGGCTGGCCGGTCATCGAGCGGAACTGGAGTCCGCCGGC
GGATCTCTCCGTGGAGCGGCTAATGGGTCAGCTCCGACTGAACTACAGCG
AGCCGGTGATGATCGAGCTGTACGTGGGCGCCGACGACAAGAACAGCTCG
GTGAACATCCTGCAGATGGACCAGCTGCAGTATGCCCTGCCCTCGAGGGA
CTACTACCTGAAGGAGAGCAGTGCGAACGACCGAAGGGCCTACCATCGGT
ATATGACACAGGTGGCGCTGCTCCTGGGAGCGGATCCGGCCACCGCCGCC
GCGGAACTGGAGAAAGTTGTGCTCTTCGAGACGCAGCTAGTGAATGTTTC
CTTGCCGGAGGCGGATCGTCATGACACTAGCCTGGTCTATCGTAAGATGT
TGCTGCCCGAGCTGCAGGAACTGGTGCCCGAGGTGCAGTGGCAGGAGTAT
CTACAGGCAGCTCTGGGTCCGGGGATTCCCCTGCAGGAGGACGAGCCGCT
GGTCACCTACGGGCTGCACTATCTCACCGAAATGGGCAAGATACTGGCGC
ACACCGATCGCCGTGTGGTGCACAACTATATGCTGTGGCGCCTGGTCATG
TCCTTGATGTCACACATGATCGATGAGTATCAGCGTGAGCGGGTGGAGTT
CCGCAAGATCCTAATGGGCATCCAGTCGGAGAGGACACGCTGGTCACAGT
GCGTCGAGTGGACTAACAAGAAGCTGGGTGTCGCCGTGGGAGCCCTCTTC
ATCCGGGACAACTTCAATCAGGAGAGCAAGGAGGTGGCCCTCGAGATGAT
CCACACTATACGTGCGGCGTTCAACGAGCTTCTGGCCGAGAACGATTGGA
TGGACGACGAGACGCGGGCGGTGGCCAAGGAGAAGGCGGACTCGATGAAC
GAGCGGATTGGTTATCCGGAGCTGCTCACCAATGCCACCGAGCTGGAGCA
GGAGTACGTGAATCTAACAATTGTCCCCGACAACTTCATCAACAATGTCC
TTAGCATTCTGCAATGGGAGTCGGAGAAGATGCTGCGACTTCTTCGCCAG
CCGGTGGACAAGGAAAAGTGGACCACCGAACCGGCGGTGGTGAATGCCTT
CTACAACCCGAATAAAAACGATATAGTATTTCCTGCTGGCATCCTGCAGC
CGCTATTCTACAGCCAGCACTTTCCCAAGTCCTTGAATTACGGCGGAATC
GGAGTGGTCATTGGCCACGAGATTACCCACGGATTCGACGACAAGGGCAG
GCAGTTCGACAAGGAGGGCAACATGATGCAGTGGTGGAACAATGCCACCA
TCGAGGCCTTTCGCGAACGGACGCAGTGCGTCATCGATCAGTACTCGCGC
TACAAGATTAACGAGGTGGACATGTTCATGGACGGACGGATGACGCAGGG
CGAGAACATCGCCGACAACGGCGGTCTAAAACAGGCTTTCAGGGCCTACA
AGAAATGGGAGACCTTACATGGGCGGGAGCAGCAGCTGCCCGGCCTGAAC
ATGACCCACGATCAGCTGTTCTTTCTCAACTACGCCCAAATCTGGTGCGG
ATCCATGCGGCCGGAGGACGCTCTGACCAAGATCCGCTCCGCGGTCCACT
CGCCCGGATTCGTTCGTGTCCTGGGACCACTTTCGAATTCTCGCGACTTT
GCCAGCGCCTACAAATGCCCACTGGGCAGCACCATGAATCCGGCGGAAAA
GTGCAGCGTGTGGGCAAGCTTTCTAGACCAT

BO11349.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
Nep1-RD 2550 CG5905-PD 1..2547 17..2563 12705 99.9 Plus
Nep1-RC 2550 CG5905-PC 1..2547 17..2563 12705 99.9 Plus
Nep1-RA 2550 CG5905-PA 1..2547 17..2563 12705 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
Nep1-RD 4026 CG5905-RD 1105..3651 17..2563 12705 99.9 Plus
Nep1-RC 3557 CG5905-RC 636..3182 17..2563 12705 99.9 Plus
Nep1-RA 3368 CG5905-RA 447..2993 17..2563 12705 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6101653..6102659 807..1813 5035 100 Plus
X 23542271 X 6096209..6096653 17..461 2210 99.8 Plus
X 23542271 X 6102953..6103273 1974..2294 1605 100 Plus
X 23542271 X 6103326..6103596 2293..2563 1355 100 Plus
X 23542271 X 6102725..6102887 1814..1976 815 100 Plus
X 23542271 X 6101236..6101368 558..690 650 99.2 Plus
X 23542271 X 6101437..6101556 687..806 600 100 Plus
X 23542271 X 6099578..6099679 459..560 510 100 Plus
3R 32079331 3R 20653867..20653997 2109..1979 310 82.4 Minus
Blast to na_te.dros performed on 2014-11-26 15:46:49 has no hits.

BO11349.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:52 Download gff for BO11349.complete
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 437..2993 7..2563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:19 Download gff for BO11349.complete
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 447..2993 17..2565 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:13 Download gff for BO11349.complete
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 447..2993 17..2565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:30 Download gff for BO11349.complete
Subject Subject Range Query Range Percent Splice Strand
Nep1-RA 447..2993 17..2565 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:30 Download gff for BO11349.complete
Subject Subject Range Query Range Percent Splice Strand
X 6096209..6096653 17..461 99 -> Plus
X 6099581..6099679 462..560 100 -> Plus
X 6101239..6101366 561..688 99 -> Plus
X 6101439..6101556 689..806 100 -> Plus
X 6101653..6102659 807..1813 100 -> Plus
X 6102725..6102887 1814..1976 100 -> Plus
X 6102956..6103272 1977..2293 100 -> Plus
X 6103327..6103596 2294..2565 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:19 Download gff for BO11349.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5990242..5990686 17..461 99 -> Plus
arm_X 5993614..5993712 462..560 100 -> Plus
arm_X 5995272..5995399 561..688 99 -> Plus
arm_X 5995472..5995589 689..806 100 -> Plus
arm_X 5995686..5996692 807..1813 100 -> Plus
arm_X 5996758..5996920 1814..1976 100 -> Plus
arm_X 5996989..5997305 1977..2293 100 -> Plus
arm_X 5997360..5997629 2294..2565 99   Plus

BO11349.pep Sequence

Translation from 16 to 2581

> BO11349.pep
MSQQHEATAAAAEKPLNNGYLQANAPLEELSATVVSPLLGQQQVQHQAPH
QMQQQQQQQQQNKLPTVVFLAPDGSGGVGIQRGNPAQGNPGMVTGTGSHS
DWLLKESQQRRRLLVLAIAFTVLGAAIGALAIYFASVHQRCHLYRLEPDN
DDRPNGRWNQDSGSAHEGQDNICMTQECVRTAASLLSAMDLNSDPCEDFF
QYACGTWNKMHPIPEDRSSISTFEVLSDQQQVILRAVLEEPIDERDNKAT
IKAKTFFKSCMDIPQIRKIGTGRLKQVLQSLGGWPVIERNWSPPADLSVE
RLMGQLRLNYSEPVMIELYVGADDKNSSVNILQMDQLQYALPSRDYYLKE
SSANDRRAYHRYMTQVALLLGADPATAAAELEKVVLFETQLVNVSLPEAD
RHDTSLVYRKMLLPELQELVPEVQWQEYLQAALGPGIPLQEDEPLVTYGL
HYLTEMGKILAHTDRRVVHNYMLWRLVMSLMSHMIDEYQRERVEFRKILM
GIQSERTRWSQCVEWTNKKLGVAVGALFIRDNFNQESKEVALEMIHTIRA
AFNELLAENDWMDDETRAVAKEKADSMNERIGYPELLTNATELEQEYVNL
TIVPDNFINNVLSILQWESEKMLRLLRQPVDKEKWTTEPAVVNAFYNPNK
NDIVFPAGILQPLFYSQHFPKSLNYGGIGVVIGHEITHGFDDKGRQFDKE
GNMMQWWNNATIEAFRERTQCVIDQYSRYKINEVDMFMDGRMTQGENIAD
NGGLKQAFRAYKKWETLHGREQQLPGLNMTHDQLFFLNYAQIWCGSMRPE
DALTKIRSAVHSPGFVRVLGPLSNSRDFASAYKCPLGSTMNPAEKCSVWA
SFLDH

BO11349.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Nep1-PD 849 CG5905-PD 1..849 1..849 4468 100 Plus
Nep1-PC 849 CG5905-PC 1..849 1..849 4468 100 Plus
Nep1-PA 849 CG5905-PA 1..849 1..849 4468 100 Plus
Nep1-PB 849 CG5905-PB 1..849 1..849 4468 100 Plus
Nep4-PC 978 CG4058-PC 379..978 249..849 1450 44.9 Plus