Clone Sequence Records
BO11358.3prime Sequence
833 bp (747 high quality bases) assembled on 2006-04-19
> BO11358.3prime
ATGGTCTAGAAAGCTTGCTATCGACAATTTCGACATTGATATCTTAAAAG
AATTAGCGAGCTGGTCGTTCTCATTGGTCGGGTGCGCTTTGATTTTGTGA
ATGGCTGCATCAGTATGCTGTTGCATCCTGGCATACGAAGGAATAAGCTT
ATCGTCTTCGTCCTCCGGCTCACTGCTCGACTCCTCGTTCGATTCATCTG
CTTTAATCAGTATATGTGGTCTCTGCCCGGAGTCCCTCTTCTTGAGCAGA
TATGTACCATGTTTTTTGCACTCATTGATTACAAACTTGAAGTCCGAATG
GTGACGAAGGGTGACCGGATTGCCAACCAGGATCAGAAGTGCTTTAGCTC
TGGACAGAAGAACGTTTACACGACGAGGATTGCACATAAATCCCATGTTT
GTGAAGGATTTAACCAAACTAGCAATGATTATGGTCTTTTCGCGACCCTG
GTATGTCTCCACGCTGCCTACCTCTACATTTGGGTATCCCTTACTTTGGA
GTAGCTTGGTAACTAGTTTACCCTGAGCCGTATACGGCGCAACAATGCCA
ACGTCCTCCTGTCCGACCACGCGATCGTTTATCAGGCGTTTTACATACCA
ACATATAACTTCTGCCTCCAAATTATTGTAAGAGCTAGTGGAGTTCTGCT
CCCGGTTGGTTACTCCATGAGTGGCCTGAAATATTATCGGGAACTGTGGA
TTCGTTAGAACGCTCCAGTTGGCTGCTAGATTCACATCCATAGCAGGAGC
CTGAGCTTTTAGCTCTCCGTTATAGTAGAGCTCATTAAACAGGCGTACAA
TCTGCGGATGGGATCGATAGTTACGACATAGAC
BO11358.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-PB | 2433 | CG6967-RB | 1616..2430 | 833..19 | 4075 | 100 | Minus |
| CG6967-PA | 2478 | CG6967-RA | 1661..2475 | 833..19 | 4075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-RD | 3474 | CG6967-RD | 1830..2644 | 833..19 | 4075 | 100 | Minus |
| CG6967-RC | 3410 | CG6967-RC | 1766..2580 | 833..19 | 4075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17064902..17065716 | 833..19 | 4075 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:18:11 has no hits.
BO11358.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:39 Download gff for
BO11358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-PA | 1661..2478 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:27:44 Download gff for
BO11358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-PA | 1661..2478 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:24:35 Download gff for
BO11358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 1766..2583 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:58 Download gff for
BO11358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 1766..2583 | 15..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:58 Download gff for
BO11358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17064902..17065719 | 15..833 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:24:35 Download gff for
BO11358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12952407..12953224 | 15..833 | 99 | | Minus |
BO11358.complete Sequence
2509 bp assembled on 2012-05-15
GenBank Submission: KX797048
> BO11358.complete
GAAGTTATCAGTCGACATGCACCAAACAGAGGATTTGAAATTAATAGATC
GGCAGCTATCGAAAATAGCTCGTAAAAGATATAAATGGCAGGAAAAGAAT
AAAACTACGTTTGTTTTATGCACACATGGAATGGTCAACGACGACGACAA
AGTCAAACAATGCAACCCAGAGGAAAAACAACAGCAACTTTTATCCATGA
TGCGGGAATTGCCATATTATCCGCCAAGTAACGAGATGATAGAGGCGAAC
ACAAACCAGGATTTGAGCGCAAATAATAGTGTGTTCGGCGATTTTATGAA
GACCAAACGCTTGGAGTTTTACAATGTGTGCTCCGTGATGCAAACGCTGT
TAACCATCGACGATCTGTCCAATATGGAGCTATACGCCCAACTGATCCAA
TCTGATGTGCCTGTGCAGCGCGTCTCCAAGCTGACATATAAAATAACTTT
CAAGAGCACGCCCGTGAATGCAGAGGACTTTGTTGCTCCCAATCTAGACC
AAGTGGTGCTGGTGCCCAAGGCTAGCCTTCTGGCATCTCCACTACCTAAA
CAATTGGTGCTGGCCTTGCTTCCGCATCCTCATGAAGATTTGGAGCCGGG
CGATCCAATGCTTCGCCATGTGGCTAGTGTGGACAAGGTCAGCAGCACCA
CTGTTCACGTGCGCTTCAGCCGCAAACATAAAGCGGTCTTGTCAGGACAG
CGCTTCTATGCCATTATCCGCTCCAGACGCCTTACAATCCGATACATGTA
TCGCGCACTCAATCTGCTCCAGGAGAGCCCCTTGGTGCGCCGCTACCTAT
TTCCGTTTCCCAGCTGGCTGACGCAGCTTGTGGACAATTCTCAGATTAAG
GTATGTTGCGACGGCCATCTGCCTAATTGGATGCAAGGAAGGCCACAAGA
GCCAGCTACTCCAACCTCGCTCTCTCTTCTTAATTCGACCATCTATTCCA
ACGCTGAGCAGTTAGAGGCCGTACAACGCATTGTTGCGGGACCAAGTACC
CAGGGACCATACATTCTATTCGGACCACCAGGCACTGGTAAGACCACTAC
CATTGTGGAGGCCATTCTACAGCTGCGCCTTCAACAACCACAAAGCCGTA
TACTCGTAACCGCCGGTTCGAACTCAGCATGTGACACAATCGCCCTGAAG
CTTTGCGAGTATATTGAAAGCAACATCCGTCTCCAGGAGCACTTTGCCCA
ACAGAAGCTGCCCGAACCTGATCACCAGTTGATTCGCGTGTACTCGCGCT
CCATTTATGAGAAGGGCTTTGCGTCCGTGCCGTCACTGCTGCTGAAAAAT
TCCAATTGCTCGAAGAGTATCTACGATCATATTAAAGCTTCACGTATTGT
AAAGTACGGCATTATCGTGGCCACGCTCTGCACAGTGGCACGCTTGGTTA
CTGATACCCTTGGTAGGTACAACTTCTTCACCCACATTTTCATCGACGAG
GCGGGCGCTTCGACTGAACCCGAGGCTTTAATCGGTATTATGGGTATTAA
GCAGACAGCAGATTGCCATGTGATTTTGTCCGGGGATCATAAGCAGCTCG
GCGCCGTGATAAAAAGTAATCGGGCCGCTTCTTTGGGATTAAGCCGGTCT
CTAATGGAGAGGCTCCTCCAATCCGATTGCTACAAATCTGATGAAAACGG
AAACTACGATCGCAACCGGCAGATGCGTCTATGTCGTAACTATCGATCCC
ATCCGCAGATTGTACGCCTGTTTAATGAGCTCTACTATAACGGAGAGCTA
AAAGCTCAGGCTCCTGCTATGGATGTGAATCTAGCAGCCAACTGGAGCGT
TCTAACGAATCCACAGTTCCCGATAATATTTCAGGCCACTCATGGAGTAA
CCAACCGGGAGCAGAACTCCACTAGCTCTTACAATAATTTGGAGGCAGAA
GTTATATGTTGGTATGTAAAACGCCTGATAAACGATCGCGTGGTCGGACA
GGAGGACGTTGGCATTGTTGCGCCGTATACGGCTCAGGGTAAACTAGTTA
CCAAGCTACTCCAAAGTAAGGGATACCCAAATGTAGAGGTAGGCAGCGTG
GAGACATACCAGGGTCGCGAAAAGACCATAATCATTGCTAGTTTGGTTAA
ATCCTTCACAAACATGGGATTTATGTGCAATCCTCGTCGTGTAAACGTTC
TTCTGTCCAGAGCTAAAGCACTTCTGATCCTGGTTGGCAATCCGGTCACC
CTTCGTCACCATTCGGACTTCAAGTTTGTAATCAATGAGTGCAAAAAACA
TGGTACATATCTGCTCAAGAAGAGGGACTCCGGGCAGAGACCACATATAC
TGATTAAAGCAGATGAATCGAACGAGGAGTCGAGCAGTGAGCCGGAGGAC
GAAGACGATAAGCTTATTCCTTCGTATGCCAGGATGCAACAGCATACTGA
TGCAGCCATTCACAAAATCAAAGCGCACCCGACCAATGAGAACGACCAGC
TCGCTAATTCTTTTAAGATATCAATGTCGAAATTGTCGATAGCAAGCTTT
CTAGACCAT
BO11358.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-RD | 2295 | CG6967-PD | 1..2292 | 200..2491 | 11460 | 100 | Plus |
| CG6967-RC | 2295 | CG6967-PC | 1..2292 | 200..2491 | 11460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-RC | 3410 | CG6967-RC | 106..2580 | 17..2491 | 12375 | 100 | Plus |
| CG6967-RD | 3474 | CG6967-RD | 340..2644 | 187..2491 | 11525 | 100 | Plus |
| CG6967-RD | 3474 | CG6967-RD | 106..275 | 17..186 | 850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17064254..17065716 | 1029..2491 | 7315 | 100 | Plus |
| 2R | 25286936 | 2R | 17063171..17064016 | 187..1032 | 4230 | 100 | Plus |
| 2R | 25286936 | 2R | 17062964..17063106 | 44..186 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:56:38 has no hits.
BO11358.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:35:48 Download gff for
BO11358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 104..2578 | 17..2493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:49 Download gff for
BO11358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 106..2580 | 17..2493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:30 Download gff for
BO11358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 106..2580 | 17..2493 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:30 Download gff for
BO11358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17062880..17062906 | 17..43 | 100 | -> | Plus |
| 2R | 17062964..17063106 | 44..186 | 100 | -> | Plus |
| 2R | 17063171..17064015 | 187..1031 | 100 | -> | Plus |
| 2R | 17064257..17065716 | 1032..2493 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:49 Download gff for
BO11358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12950385..12950411 | 17..43 | 100 | -> | Plus |
| arm_2R | 12950469..12950611 | 44..186 | 100 | -> | Plus |
| arm_2R | 12950676..12951520 | 187..1031 | 100 | -> | Plus |
| arm_2R | 12951762..12953221 | 1032..2493 | 99 | | Plus |
BO11358.pep Sequence
Translation from 16 to 2509
> BO11358.pep
MHQTEDLKLIDRQLSKIARKRYKWQEKNKTTFVLCTHGMVNDDDKVKQCN
PEEKQQQLLSMMRELPYYPPSNEMIEANTNQDLSANNSVFGDFMKTKRLE
FYNVCSVMQTLLTIDDLSNMELYAQLIQSDVPVQRVSKLTYKITFKSTPV
NAEDFVAPNLDQVVLVPKASLLASPLPKQLVLALLPHPHEDLEPGDPMLR
HVASVDKVSSTTVHVRFSRKHKAVLSGQRFYAIIRSRRLTIRYMYRALNL
LQESPLVRRYLFPFPSWLTQLVDNSQIKVCCDGHLPNWMQGRPQEPATPT
SLSLLNSTIYSNAEQLEAVQRIVAGPSTQGPYILFGPPGTGKTTTIVEAI
LQLRLQQPQSRILVTAGSNSACDTIALKLCEYIESNIRLQEHFAQQKLPE
PDHQLIRVYSRSIYEKGFASVPSLLLKNSNCSKSIYDHIKASRIVKYGII
VATLCTVARLVTDTLGRYNFFTHIFIDEAGASTEPEALIGIMGIKQTADC
HVILSGDHKQLGAVIKSNRAASLGLSRSLMERLLQSDCYKSDENGNYDRN
RQMRLCRNYRSHPQIVRLFNELYYNGELKAQAPAMDVNLAANWSVLTNPQ
FPIIFQATHGVTNREQNSTSSYNNLEAEVICWYVKRLINDRVVGQEDVGI
VAPYTAQGKLVTKLLQSKGYPNVEVGSVETYQGREKTIIIASLVKSFTNM
GFMCNPRRVNVLLSRAKALLILVGNPVTLRHHSDFKFVINECKKHGTYLL
KKRDSGQRPHILIKADESNEESSSEPEDEDDKLIPSYARMQQHTDAAIHK
IKAHPTNENDQLANSFKISMSKLSIASFLDH
BO11358.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-PD | 764 | CG6967-PD | 1..764 | 62..825 | 3933 | 100 | Plus |
| CG6967-PC | 764 | CG6967-PC | 1..764 | 62..825 | 3933 | 100 | Plus |
| CG6701-PD | 1333 | CG6701-PD | 356..1039 | 50..747 | 993 | 35.2 | Plus |
| CG6701-PC | 1333 | CG6701-PC | 356..1039 | 50..747 | 993 | 35.2 | Plus |
| CG6701-PB | 1333 | CG6701-PB | 356..1039 | 50..747 | 993 | 35.2 | Plus |
