Clone Sequence Records
BO11359.3prime Sequence
840 bp (775 high quality bases) assembled on 2006-04-19
> BO11359.3prime
ATGGTCTAGAAAGCTTGCGTCGTCCGTGAAAGGATGGTCGGAGGTTTCGC
TGCTGTTGCGCCGCCTGCTCTCCAGTATACGGGTCGCCTGCTCCAGGCTT
TCCTTGTAGAATATGTTACGCGGACTGTCGCCGGGCAGCGAGTATTCAGA
GGTGTCCATTTGGAAAGTTAGGCCCAGCACGATGTTGAAGGCGGACGCAT
CGTAGCCGTGGCAGCCAGAGTATCGGAACATCGGCTTCTTGTTGAACTTG
CAGCCATTCGATTGGGCACCGATCGGATCGATGCACTCGAGGGTGAGGCA
GCACTTCAGCCAGGGAAGCATGATCTTCTCGGCCACCAAGGAGCTGTCCG
AGAAGAAGACAGCATCCAGGTCGACCATCCGAAGAAAGTTAAACTCCTCA
GCTTTCGACTCAAAGTAGTCGAACATTTTTGGATGCGTCAGAGAGGATAC
CGCCGTCGCTGTGTTCCATCCGAGCACTCCAGCGGACTTGACTGCAGATT
TTCCCACTCCTGGATTCATAACGATGCTCTGCAGACTTCGCAGCTGGGCG
GAACCTCCGCGCACGCGCATGCTGTTTTCCAAGAAGAGAACCGATCGGGC
ACGCATAAGACCGTCCTTAATTACAATGGGCCGGTAGGCGTGCGTCCGCT
GATCGGCGACGAAGGAGGGAAACTCCGACAGATCATAGGTGATCACCGAG
CATCGGCTGTTATTACAGTAAGCGCCCAAATCCCGTAGTTGCTCCTCGGA
AACGCCCAAATCGTAGATTAGCAGGTACTCGCTGGGAAGCTTGGCGGCAA
TATTCTGGGGCCAGCAGGATGGCCGATGCGGCCTGCCCCT
BO11359.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14764-PA | 1314 | CG14764-RA | 521..1311 | 809..19 | 3930 | 99.8 | Minus |
CG14764-PA | 1314 | CG14764-RA | 491..523 | 840..808 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14764-RC | 2272 | CG14764-RC | 857..1677 | 840..19 | 4070 | 99.8 | Minus |
CG14764-RA | 2742 | CG14764-RA | 1327..2147 | 840..19 | 4070 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:12:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7947602..7948174 | 267..840 | 2805 | 99.7 | Plus |
2R | 25286936 | 2R | 7942638..7942889 | 19..270 | 1260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 17:12:43 has no hits.
BO11359.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:40 Download gff for
BO11359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-PA | 491..1314 | 16..840 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:27:45 Download gff for
BO11359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-PA | 491..1314 | 16..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:33:18 Download gff for
BO11359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-RA | 1327..2153 | 12..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:00:17 Download gff for
BO11359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-RA | 1327..2153 | 12..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:00:17 Download gff for
BO11359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7942632..7942888 | 12..269 | 98 | <- | Plus |
2R | 7947605..7948174 | 270..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:33:18 Download gff for
BO11359.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3830137..3830393 | 12..269 | 98 | <- | Plus |
arm_2R | 3835110..3835679 | 270..840 | 99 | | Plus |
BO11359.5prime Sequence
891 bp (765 high quality bases) assembled on 2006-04-19
> BO11359.5prime
GAAGTTATCAGTCGACATGCGCACGAAACACCTGATCCTGATACTGATCG
GAGTGATAATCGCCACGATCGTCTTCATCGCATTTGGTCCAGCCGGAGAG
CCGAACGATTCATTCAAGAACATCGTTGTCCAGACGCACCAGCAGTTTAA
AGAGTTCCAGGAAAACCTCCGCGTTGGCTTGGAACGCAAAAAGCTCGAAA
TAGACCCAAAGTATTTGCTTCTTCTGGGCTTCACCTCGTCAAATGAAGCT
ACAGGCCAACAGCAGCAGCTGGATCAGCAAAATGTGGTGGACATCGGTTC
ACCAGGTCAGCAACTGCCAAAGACAGATTTTTCAGCGCCGGCTACAAAAG
CGGAACTGGAGCTCAGCGAACTGCGAGGTCTGCGGCGTCCACAGGATGCT
GTTACCTTCGGTAGTCAGGCAGGAGATCAAAAGGGGCAGCGGAAGCGGAT
CACGACGCCGTACAACGGTACAAAGAGCAACTTCACAATCGTCAGCTATG
TGCTGGAGGGGCAGGCCGCATCGGCCATCCTGCTGGCCCAGAATATTGCC
GCCAAGCTTCCCAGCGAGTACCTGCTAATCTACGATTTGGGCGTTTCCGA
GGAGCAACTACGGGATTTGGGCGCCTACTGTAATAACAGCCGATGCTCGG
TGATCACCTATGATCTGTCGGAGTTTCCCTCCTTCGTCGCCGATCAGCGG
ACGCACGCCTACCGGCCCATTGTAATTAAGGACGGTCTTATGCGTGCCCG
ATCGGTTCTCTTCTTGGAAAACAGCATGCGCGTGCGCGGAGGTTCCGCCC
AGCTGCGAAGTCTGCAGAAGCATCGTTATGAATCCCGGAGGGGGAAAATC
TGCAGTCAAGTCCGCTGGAATGCTCGGATGGAACACAGCGA
BO11359.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14764-PA | 1314 | CG14764-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
CG14764-PA | 1314 | CG14764-RA | 802..874 | 819..891 | 290 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14764-RC | 2272 | CG14764-RC | 366..1240 | 16..891 | 4310 | 99.5 | Plus |
CG14764-RA | 2742 | CG14764-RA | 836..1710 | 16..891 | 4310 | 99.5 | Plus |
CG14764-RB | 1293 | CG14764-RB | 836..980 | 16..160 | 725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7947791..7948523 | 891..158 | 3575 | 99.5 | Minus |
2R | 25286936 | 2R | 7953901..7954046 | 161..16 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:18:52 has no hits.
BO11359.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:41 Download gff for
BO11359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-PA | 1..873 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:27:46 Download gff for
BO11359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-PA | 1..873 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:42:49 Download gff for
BO11359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-RA | 830..1709 | 10..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:57 Download gff for
BO11359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-RA | 830..1709 | 10..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:57 Download gff for
BO11359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7947792..7948520 | 161..890 | 99 | <- | Minus |
2R | 7953902..7954052 | 10..160 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:42:49 Download gff for
BO11359.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3835297..3836025 | 161..890 | 99 | <- | Minus |
arm_2R | 3841407..3841557 | 10..160 | 98 | | Minus |
BO11359.complete Sequence
1345 bp assembled on 2006-10-10
GenBank Submission: FJ632067
> BO11359.complete
GAAGTTATCAGTCGACATGCGCACGAAACACCTGATCCTGATACTGATCG
GAGTGATAATCGCCACGATCGTCTTCATCGCATTTGGTCCAGCCGGAGAG
CCGAACGATTCATTCAAGAACATCGTTGTCCAGACGCACCAGCAGTTTAA
AGAGTTCCAGGAAAACCTCCGCGTTGGCTTGGAACGCAAAAAGCTCGAAA
TAGACCCAAAGTATTTGCTTCTTCTGGGCTTCACCTCGTCAAATGAAGCT
ACAGGCCAACAGCAGCAGCTGGATCAGCAAAATGTGGTGGACATCGGTTC
ACCAGGTCAGCAACTGCCAAAGACAGATTTTTCAGCGCCGGCTACAAAAG
CGGAACTGGAGCTCAGCGAACTGCGAGGTCTGCGGCGTCCACAGGATGCT
GTTACCTTCGGTAGTCAGGCAGGAGATCAAAAGGGGCAGCGGAAGCGGAT
CACGACGCCGTACAACGGTACAAAGAGCAACTTCACAATCGTCAGCTATG
TGCTGGAGGGGCAGGCCGCATCGGCCATCCTGCTGGCCCAGAATATTGCC
GCCAAGCTTCCCAGCGAGTACCTGCTAATCTACGATTTGGGCGTTTCCGA
GGAGCAACTACGGGATTTGGGCGCCTACTGTAATAACAGCCGATGCTCGG
TGATCACCTATGATCTGTCGGAGTTTCCCTCCTTCGTCGCCGATCAGCGG
ACGCACGCCTACCGGCCCATTGTAATTAAGGACGGTCTTATGCGTGCCCG
ATCGGTTCTCTTCTTGGAAAACAGCATGCGCGTGCGCGGAGGTTCCGCCC
AGCTGCGAAGTCTGCAGAGCATCGTTATGAATCCAGGAGTGGGAAAATCT
GCAGTCAAGTCCGCTGGAGTGCTCGGATGGAACACAGCGACGGCGGTATC
CTCTCTGACGCATCCAAAAATGTTCGACTACTTTGAGTCGAAAGCTGAGG
AGTTTAACTTTCTTCGGATGGTCGACCTGGATGCTGTCTTCTTCTCGGAC
AGCTCCTTGGTGGCCGAGAAGATCATGCTTCCCTGGCTGAAGTGCTGCCT
CACCCTCGAGTGCATCGATCCGATCGGTGCCCAATCGAATGGCTGCAAGT
TCAACAAGAAGCCGATGTTCCGATACTCTGGCTGCCACGGCTACGATGCG
TCCGCCTTCAACATCGTGCTGGGCCTAACTTTCCAAATGGACACCTCTGA
ATACTCGCTGCCCGGCGACAGTCCGCGTAACATATTCTACAAGGAAAGCC
TGGAGCAGGCGACCCGTATACTGGAGAGCAGGCGGCGCAACAGCAGCGAA
ACCTCCGACCATCCTTTCACGGACGACGCAAGCTTTCTAGACCAT
BO11359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14764-RC | 1314 | CG14764-PC | 1..1311 | 17..1327 | 6555 | 100 | Plus |
CG14764-RA | 1314 | CG14764-PA | 1..1311 | 17..1327 | 6555 | 100 | Plus |
CG14764-RB | 303 | CG14764-PB | 1..144 | 17..160 | 720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14764-RC | 2272 | CG14764-RC | 366..1677 | 16..1327 | 6560 | 100 | Plus |
CG14764-RA | 2742 | CG14764-RA | 836..2147 | 16..1327 | 6560 | 100 | Plus |
CG14764-RB | 1293 | CG14764-RB | 836..980 | 16..160 | 725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7947602..7948523 | 1079..158 | 4610 | 100 | Minus |
2R | 25286936 | 2R | 7942638..7942889 | 1327..1076 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 7953901..7954046 | 161..16 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:29:20 has no hits.
BO11359.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:28 Download gff for
BO11359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-RA | 1..1314 | 17..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:31 Download gff for
BO11359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-RA | 827..2137 | 17..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:06 Download gff for
BO11359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-RA | 837..2147 | 17..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:28 Download gff for
BO11359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-RA | 820..2143 | 10..1334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:34 Download gff for
BO11359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14764-RA | 837..2147 | 17..1329 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:34 Download gff for
BO11359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7942635..7942888 | 1077..1329 | 99 | <- | Minus |
2R | 7947605..7948520 | 161..1076 | 100 | <- | Minus |
2R | 7953902..7954045 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:06 Download gff for
BO11359.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3830140..3830393 | 1077..1329 | 99 | <- | Minus |
arm_2R | 3835110..3836025 | 161..1076 | 100 | <- | Minus |
arm_2R | 3841407..3841550 | 17..160 | 100 | | Minus |
BO11359.pep Sequence
Translation from 16 to 1345
> BO11359.pep
MRTKHLILILIGVIIATIVFIAFGPAGEPNDSFKNIVVQTHQQFKEFQEN
LRVGLERKKLEIDPKYLLLLGFTSSNEATGQQQQLDQQNVVDIGSPGQQL
PKTDFSAPATKAELELSELRGLRRPQDAVTFGSQAGDQKGQRKRITTPYN
GTKSNFTIVSYVLEGQAASAILLAQNIAAKLPSEYLLIYDLGVSEEQLRD
LGAYCNNSRCSVITYDLSEFPSFVADQRTHAYRPIVIKDGLMRARSVLFL
ENSMRVRGGSAQLRSLQSIVMNPGVGKSAVKSAGVLGWNTATAVSSLTHP
KMFDYFESKAEEFNFLRMVDLDAVFFSDSSLVAEKIMLPWLKCCLTLECI
DPIGAQSNGCKFNKKPMFRYSGCHGYDASAFNIVLGLTFQMDTSEYSLPG
DSPRNIFYKESLEQATRILESRRRNSSETSDHPFTDDASFLDH
BO11359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14764-PC | 437 | CG14764-PC | 1..437 | 1..437 | 2236 | 100 | Plus |
CG14764-PA | 437 | CG14764-PA | 1..437 | 1..437 | 2236 | 100 | Plus |
CG14764-PB | 100 | CG14764-PB | 1..52 | 1..52 | 246 | 94.2 | Plus |