Clone BO11361 Report

Search the DGRC for BO11361

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:113
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptSesn-RA
Protein status:BO11361.pep: validated full length
Sequenced Size:1525

Clone Sequence Records

BO11361.3prime Sequence

748 bp (716 high quality bases) assembled on 2006-04-19

> BO11361.3prime
ATGGTCTAGAAAGCTTGCAGTCATATAGCGCATTATCTCGCGCAGAGCAT
AGAGTAACTCGGCCTGATTACGGGCTTCCATTATCATCAGATTCACATGA
ACCTTTTCACTGTCCTGCAGCTCGACCAGCACACTATCGTAGTCCTTGGT
GGTGATTCGCTCGGGGAAGCAGCAGGCTGTCTTAATAAACATTTTCAGGG
GACGCACCAGGAGCTGGTTCACTTCGCCATAGTCGTAGTCGTCGTGGCGA
ATGCCGTAGATGCACTGGATGTAGTTCCAAATGGCCCGCCGGAACTTGGA
CGTGTCCACATTCTTGATGCCGCCCATGGTGCAGTAGGTGAGATTGTAGG
CCGCCCGAAACTTGGCGTCCAAGAAGATGCCCACATCGTTGTACAATCCG
TCCACTAGCGAGTAGCCGTGATCCTCCCAAGAGTAGTCCTGGATGCGAAA
CGTGTTGATGCTCTCGGTGCCGCGCCGGGCAAAGTCCTGGTAAATGAAGT
TGGCATCGTCCACGTAGTGCGACAGGTTGGTGGGCACGCCCACAGCCGCC
TCCGGAGTCACGGCCGCCAGCTCCGCCGTCTGCTGCTCCACCTTCTGGAA
GCGGCTGCTCAGCTCCGCCTCGCTGCACTCGTCCTGCTTCTGGGACAGGA
CCTTCATGCGCTCCATTAGCGTCTCCACACTGATGCCGTGCTGCTGCGGC
AGCTGCTGCGCCGTGGCCAAATATCCGTTAAGGGTCGTTGCATCGGGT

BO11361.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11299-PA 1494 CG11299-RA 762..1491 748..19 3650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sesn-RD 2431 CG11299-RD 1164..1893 748..19 3650 100 Minus
Sesn-RC 4745 CG11299-RC 1815..2544 748..19 3650 100 Minus
Sesn-RB 3053 CG11299-RB 1786..2515 748..19 3650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23731652..23731971 717..398 1600 100 Minus
2R 25286936 2R 23732036..23732220 398..214 925 100 Minus
2R 25286936 2R 23732389..23732505 217..101 585 100 Minus
2R 25286936 2R 23732560..23732645 104..19 430 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:34:24 has no hits.

BO11361.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:44 Download gff for BO11361.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11299-PA 762..1494 16..748 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:27:51 Download gff for BO11361.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11299-PA 762..1494 16..748 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:28:28 Download gff for BO11361.3prime
Subject Subject Range Query Range Percent Splice Strand
Sesn-RB 1786..2521 12..748 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:46:50 Download gff for BO11361.3prime
Subject Subject Range Query Range Percent Splice Strand
Sesn-RB 1786..2521 12..748 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:50 Download gff for BO11361.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23732393..23732503 103..213 100 -> Minus
2R 23732562..23732651 12..102 95   Minus
2R 23731498..23731529 717..748 100 -> Minus
2R 23731653..23731971 398..716 100 -> Minus
2R 23732037..23732220 214..397 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:28:28 Download gff for BO11361.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19619021..19619052 717..748 100 -> Minus
arm_2R 19619176..19619494 398..716 100 -> Minus
arm_2R 19619560..19619743 214..397 100 -> Minus
arm_2R 19619916..19620026 103..213 100 -> Minus
arm_2R 19620085..19620174 12..102 95   Minus

BO11361.5prime Sequence

805 bp (744 high quality bases) assembled on 2006-04-19

> BO11361.5prime
GAAGTTATCAGTCGACATGTACTACGCCGTCGATTACTACGCGGATATGG
GACAAATCTCTCAAGATTGTTTCGCTGCAACGCAAACTGGAGCATCCGAC
TTTGACATGGACGAGCTCGATGACCTGGACCAGGTGACCCAAGTGATTGG
ATATCATCCCCAGTTCCACGATCACTTCCTGGCCACCCAGAACTTCATTA
TGAAGGGCGATGGTCCGCTGCCTAACGATTACAGATACTACTTGGCCATA
ATTGCTGCTGCCCGCCATCAGTGTCCGTATCTGGTGAAGCGCTACGAGAA
GGAGTTCATCAACCAGGGCGGCGATAGTGCCTGGCTGGGCGGCCTGGACT
TTATACCCGCCAAACTACGTGCCATATACGATATCAATAAAATATTAGCC
CATCGGCCCTGGCTGCTGCGCAAGGAGCATATCGAGCGGCTCACCAAGGG
GAAGAACAGCTGGTCGCTGTCGGAGGTGGTGCACGCCATGGTCCTGCTCT
CGCACTTCCACTCGCTGTCCTCCTTTGTGTTCTCCTGCGGCCTCACACAA
AAGCTGGACGGGCTGTCCAGTCCCAAGCTGAAGAGTCCGCCCGCAGCAGT
GGCGGCCCTCGCACCCACCATTCTCATCACTCCCACCTCGCCGACGGAGC
CGCAGAAGGGGAAGCCAGTGCTGGCGGAGATCTCGCTCAACAATGCAAAT
CCGGATTACGACAGCCAGACCGCAGCGAGCAGTAATGGAGGAGCTCCCCC
GGACTCGGCAAATGCGGTTGCGGATGGACCCGATGCAACGACCCTTAACG
GATAA

BO11361.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11299-PA 1494 CG11299-RA 1..788 17..804 3915 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
Sesn-RC 4745 CG11299-RC 1053..1841 16..804 3930 99.9 Plus
Sesn-RB 3053 CG11299-RB 1024..1812 16..804 3930 99.9 Plus
Sesn-RA 3097 CG11299-RA 1068..1856 16..804 3930 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23731155..23731524 435..804 1835 99.7 Plus
2R 25286936 2R 23729049..23729235 68..254 935 100 Plus
2R 25286936 2R 23730909..23731091 254..436 915 100 Plus
2R 25286936 2R 23722824..23722875 16..67 260 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:38:56 has no hits.

BO11361.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:45 Download gff for BO11361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11299-PA 1..787 17..803 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:27:52 Download gff for BO11361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11299-PA 1..787 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:15:55 Download gff for BO11361.5prime
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 1062..1856 9..805 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:44 Download gff for BO11361.5prime
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 1062..1856 9..805 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:44 Download gff for BO11361.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23722818..23722875 9..67 94 -> Plus
2R 23729049..23729234 68..253 100 -> Plus
2R 23730909..23731091 254..436 100 -> Plus
2R 23731157..23731524 437..805 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:15:55 Download gff for BO11361.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19610341..19610398 9..67 94 -> Plus
arm_2R 19616572..19616757 68..253 100 -> Plus
arm_2R 19618432..19618614 254..436 100 -> Plus
arm_2R 19618680..19619047 437..805 99   Plus

BO11361.complete Sequence

1525 bp assembled on 2006-10-10

GenBank Submission: FJ632068

> BO11361.complete
GAAGTTATCAGTCGACATGTACTACGCCGTCGATTACTACGCGGATATGG
GACAAATCTCTCAAGATTGTTTCGCTGCAACGCAAACTGGAGCATCCGAC
TTTGACATGGACGAGCTCGATGACCTGGACCAGGTGACCCAAGTGATTGG
ATATCATCCCCAGTTCCACGATCACTTCCTGGCCACCCAGAACTTCATTA
TGAAGGGCGATGGTCCGCTGCCTAACGATTACAGATACTACTTGGCCATA
ATTGCTGCTGCCCGCCATCAGTGTCCGTATCTGGTGAAGCGCTACGAGAA
GGAGTTCATCAACCAGGGCGGCGATAGTGCCTGGCTGGGCGGCCTGGACT
TTATACCCGCCAAACTACGTGCCATATACGATATCAATAAAATATTAGCC
CATCGGCCCTGGCTGCTGCGCAAGGAGCATATCGAGCGGCTCACCAAGGG
GAAGAACAGCTGGTCGCTGTCGGAGGTGGTGCACGCCATGGTCCTGCTCT
CGCACTTCCACTCGCTGTCCTCCTTTGTGTTCTCCTGCGGCCTCACACAA
AAGCTGGACGGGCTGTCCAGTCCCAAGCTGAAGAGTCCGCCCGCAGCAGT
GGCGGCCCTCGCACCCACCATTCTCATCACTCCCACCTCGCCGACGGAGC
CGCAGAAGGGGAAGCCAGTGCTGGCGGAGATCTCGCTCAACAATGCAAAT
CCGGATTACGACAGCCAGACCGCAGCGAGCAGTAATGGAGGAGCTCCACC
GGACTCGGCAAATGCGGTTGCGGATGGACCCGATGCAACGACCCTTAACG
GATATTTGGCCACGGCGCAGCAGCTGCCGCAGCAGCACGGCATCAGTGTG
GAGACGCTAATGGAGCGCATGAAGGTCCTGTCCCAGAAGCAGGACGAGTG
CAGCGAGGCGGAGCTGAGCAGCCGCTTCCAGAAGGTGGAGCAGCAGACGG
CGGAGCTGGCGGCCGTGACTCCGGAGGCGGCTGTGGGCGTGCCCACCAAC
CTGTCGCACTACGTGGACGATGCCAACTTCATTTACCAGGACTTTGCCCG
GCGCGGCACCGAGAGCATCAACACGTTTCGCATCCAGGACTACTCTTGGG
AGGATCACGGCTACTCGCTAGTGGACGGATTGTACAACGATGTGGGCATC
TTCTTGGACGCCAAGTTTCGGGCGGCCTACAATCTCACCTACTGCACCAT
GGGCGGCATCAAGAATGTGGACACGTCCAAGTTCCGGCGGGCCATTTGGA
ACTACATCCAGTGCATCTACGGCATTCGCCACGACGACTACGACTATGGC
GAAGTGAACCAGCTCCTGGTGCGTCCCCTGAAAATGTTTATTAAGACAGC
CTGCTGCTTCCCCGAGCGAATCACCACCAAGGACTACGATAGTGTGCTGG
TCGAGCTGCAGGACAGTGAAAAGGTTCATGTGAATCTGATGATAATGGAA
GCCCGTAATCAGGCCGAGTTACTCTATGCTCTGCGCGAGATAATGCGCTA
TATGACTGCAAGCTTTCTAGACCAT

BO11361.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Sesn-RC 1494 CG11299-PC 1..1491 17..1507 7455 100 Plus
Sesn-RB 1494 CG11299-PB 1..1491 17..1507 7455 100 Plus
Sesn-RA 1494 CG11299-PA 1..1491 17..1507 7455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Sesn-RC 4745 CG11299-RC 1053..2544 16..1507 7460 100 Plus
Sesn-RB 3053 CG11299-RB 1024..2515 16..1507 7460 100 Plus
Sesn-RA 3097 CG11299-RA 1068..2559 16..1507 7460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23731155..23731529 435..809 1875 100 Plus
2R 25286936 2R 23731652..23731971 809..1128 1600 100 Plus
2R 25286936 2R 23729049..23729235 68..254 935 100 Plus
2R 25286936 2R 23732036..23732220 1128..1312 925 100 Plus
2R 25286936 2R 23730909..23731091 254..436 915 100 Plus
2R 25286936 2R 23732389..23732505 1309..1425 585 100 Plus
2R 25286936 2R 23732560..23732645 1422..1507 430 100 Plus
2R 25286936 2R 23722824..23722875 16..67 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:48:41 has no hits.

BO11361.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:29 Download gff for BO11361.complete
Subject Subject Range Query Range Percent Splice Strand
CG11299-RC 1..1494 17..1510 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:39 Download gff for BO11361.complete
Subject Subject Range Query Range Percent Splice Strand
CG11299-RC 1045..2548 9..1514 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:30 Download gff for BO11361.complete
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 1069..2559 17..1509 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:29 Download gff for BO11361.complete
Subject Subject Range Query Range Percent Splice Strand
CG11299-RC 1045..2548 9..1514 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:30 Download gff for BO11361.complete
Subject Subject Range Query Range Percent Splice Strand
Sesn-RA 1069..2559 17..1509 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:30 Download gff for BO11361.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23729049..23729234 68..253 100 -> Plus
2R 23730909..23731091 254..436 100 -> Plus
2R 23722825..23722875 17..67 100 -> Plus
2R 23731157..23731529 437..809 100 -> Plus
2R 23731653..23731971 810..1128 100 -> Plus
2R 23732037..23732220 1129..1312 100 -> Plus
2R 23732393..23732503 1313..1423 100 -> Plus
2R 23732562..23732645 1424..1509 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:30 Download gff for BO11361.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19610348..19610398 17..67 100 -> Plus
arm_2R 19616572..19616757 68..253 100 -> Plus
arm_2R 19618432..19618614 254..436 100 -> Plus
arm_2R 19618680..19619052 437..809 100 -> Plus
arm_2R 19619176..19619494 810..1128 100 -> Plus
arm_2R 19619560..19619743 1129..1312 100 -> Plus
arm_2R 19619916..19620026 1313..1423 100 -> Plus
arm_2R 19620085..19620168 1424..1509 97   Plus

BO11361.pep Sequence

Translation from 16 to 1525

> BO11361.pep
MYYAVDYYADMGQISQDCFAATQTGASDFDMDELDDLDQVTQVIGYHPQF
HDHFLATQNFIMKGDGPLPNDYRYYLAIIAAARHQCPYLVKRYEKEFINQ
GGDSAWLGGLDFIPAKLRAIYDINKILAHRPWLLRKEHIERLTKGKNSWS
LSEVVHAMVLLSHFHSLSSFVFSCGLTQKLDGLSSPKLKSPPAAVAALAP
TILITPTSPTEPQKGKPVLAEISLNNANPDYDSQTAASSNGGAPPDSANA
VADGPDATTLNGYLATAQQLPQQHGISVETLMERMKVLSQKQDECSEAEL
SSRFQKVEQQTAELAAVTPEAAVGVPTNLSHYVDDANFIYQDFARRGTES
INTFRIQDYSWEDHGYSLVDGLYNDVGIFLDAKFRAAYNLTYCTMGGIKN
VDTSKFRRAIWNYIQCIYGIRHDDYDYGEVNQLLVRPLKMFIKTACCFPE
RITTKDYDSVLVELQDSEKVHVNLMIMEARNQAELLYALREIMRYMTASF
LDH

BO11361.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Sesn-PC 497 CG11299-PC 1..497 1..497 2613 100 Plus
Sesn-PB 497 CG11299-PB 1..497 1..497 2613 100 Plus
Sesn-PA 497 CG11299-PA 1..497 1..497 2613 100 Plus
Sesn-PD 467 CG11299-PD 1..467 31..497 2451 100 Plus