Clone Sequence Records
BO11362.complete Sequence
2563 bp assembled on 2010-04-13
GenBank Submission: KX794374
> BO11362.complete
GAAGTTATCAGTCGACATGGCCAGCGAGGATGTGCAGATCACTAGCGTCA
TCGATGCCAATGGCCAGAGCCTACCGCTCCACGGCAACAGTTTGGGCGGT
CCCCTGGGACCGCCCGTCAAGCAGGAGCGTCCCGATGACGCCGAGATCCG
CGAACTAGCTGCCAAAATGAAGGAGCAGCAGAAGCAACAGGCCGCCCAGC
AGGCATCCCGTCAAGCGGCCATGCAGCACTCGAATGGGGGCGCCATTGCG
GCATCCTCGGCCGGTGGCAACATGCAGCCGCCGATCACAAATGGCAATGG
CCAGACCAATATCATGAACTACCTATCTCGTCATCAGAAACTACCCAACG
GCACCATGCAGGTGGTGCCCGCCTTGGCCTCCAATGGCCGCTCGAATGGA
GCCGTCAGCGACTCCGGCTCGGACAAGAAGTCCTCCACGGGACCCTGCGA
CGAGGAGTCCATTCAAGGCCACTTCGGCTGGGCTCAGTTCGGCAAGGTAT
CCATACCGTACATCTATCGCCAATCGGAGAAGTACTGCTCCGTGCGCATG
ATCGAACTGAAACTGCTGGGCAAATACCTTAACTGCCTGCATCCGGATAT
CTACTCCAGCTGCACCTGCGTGCGCAGCTACTACATCACCGATGCGGAGG
CCCGTCTCTTCATCGAGATTAATCATAAGCATTGTGACGGCGAGTTCGGT
CGCGACATCTTCAACCAAAAGGATTTGGTGGTGCGTCTCAGTGACGCATC
CAAGTTCTATCAGTTCCTGGATATTTGCTATAGGAAACTAGTCTCCGGCA
GCAAGACGCCGTCGGAGAAGTGCGGCTTTATTCGCATCAACAAGGAGTCC
GTGGTGCCCTACACTGTGCGCAACAATCAGCAGGTTGTGCCGCTCTTTTA
TTTTGAGGGCGAGACCGAGAATCTAAAGACCAAAGCGGAGCTGCTCAATG
GCTGGGACCTGGCTTATCTAAAGTTCTGCTGCAAGGTGCAGGGCATACGC
AATGAGCTCTTCTCCAGCGAGAACGTGGCCGTGATTTCGCTGACGGACAT
CAAAAGCTACTTCCCAAATGGCACCGAATTCGAGGACTACTGGCCCAGCA
AGGTGGTTGACTCCAATCTGCTCATTGGCAATCGGGCCAATGTCAACAAC
TCGGTCAATTGGACCCGTCAACCCTCGGCGCCGCCTCCAAAAGTGACCAC
CTCCGTTTCCGGATCGTCCGGCCCTTCCTCCTCCAGCGGCGGCAACATGG
GCCAGAACACATCAGCCGCATCATCCTCCGCGAACACCGCTGGTGGCCAA
CAGGTGACCTCAAAATCTCAGCAACAGCACGCTGCCTCTGCCGCCGCAGC
AGCGGCGACGGCGCATCAACAGCATCTGATGAAGCAACGCGCCGCCGCAG
CAGCAGCTGCCGCCGGCGCCAATGGTGTGGCGAATGCGGCAAATAGTTTT
GGGGCAGCCGCGGTAGCGGCCTTCAATTCCCAGGCGGCGGCAGCGGCGTC
GATGCTCCAGCAGTCGCAGGGCAACAACAGGATGTTATCGCAGGCCACCG
TCCAGGCTTTGGCCAGCAGCGGATGGATGTCCGGACAGACAAACCTGCAG
CTCCACGCCCAGATGATGGCGCAGCAAACGCATGCGAACGCCAATCGCGT
GGGAAGCTATCGGGAGCACATGAACAACCTGATGATGAGCGGCAGCAGCC
GGCAGCCGTATTCCTACAACAACCCCGCGATCTCCATGTCCTCGGTGAAC
AACCATAGTGGTGGCGGCGGGAATGCCCCACCTCCGCTCGTCCGCTCGGC
GGCAGGTCAAAATGCCAACCACATGTCACTAGCTGCATCGGCGGCCTATT
TGCAGCAACACTCGTCGGCGGTCGCCCAGCAACAGGTAGCGGCGGCAGCG
GTGGCCCAGCAACAACGTTTGGCCGCCGTCGCCGCCCATCATGCCCAGCA
GAATGGACGCAGTTCCTCGAATTCGGGTAATGCAGGCAACTCGGCGAATG
CATCGGGTAACAACAATGGGACAAGCAACACCGGCTCCTCGGGTAATGGC
TCAAACGGCAATGGCAATGCCTCCTCGAATAGCGCCTCCATGCATCTGCA
GCGCCATGCGGCACTTGCTCATGCTGCGGCGGCGGCGAATGCGGCAGATA
GTGCGCAGCGGCTGTGCGTCATACCCGAAATACCCACCAACAACATGAAC
CTGACGCCCTACAAGGTGCTCAAGGTGTGCGTGGACAAGCATCTGGTGCC
CTGCATCAACATGAAGGCCTACAACGAATCCGAACAGCTGATGACGCTCA
TCGAGTTCCAGAAGAACTTCTTCCCCTCAGTGCCGCTGGATCATTGCAAG
CGATTGATCGAGGCCCTCGGCGTGGAGCTCTACAAGGCAAATCGGCGACA
AGTGCAGATCCTGATGGAGTACGATCGCAACTACAACGAAAACATGCCAC
TGGTGCAAGTGCGCGACATCATCAAGTACATGACACAGCTGACCTTTATG
ACGCGCCAGTCGGAGCAGCCGCCAGCTAAGAGGACGCGCACGAGCGCAAG
CTTTCTAGACCAT
BO11362.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43736-RF | 3687 | CG43736-PF | 1..2529 | 17..2545 | 12645 | 100 | Plus |
| CG43736-RB | 2532 | CG43736-PB | 1..2529 | 17..2545 | 12645 | 100 | Plus |
| CG43736-RL | 4104 | CG43736-PL | 1..1812 | 17..1828 | 9060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43736-RF | 5815 | CG43736-RF | 403..2931 | 17..2545 | 12645 | 100 | Plus |
| CG43736-RB | 4330 | CG43736-RB | 403..2931 | 17..2545 | 12645 | 100 | Plus |
| CG43736-RL | 7668 | CG43736-RL | 684..2495 | 17..1828 | 9060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6869390..6870992 | 17..1619 | 8015 | 100 | Plus |
| X | 23542271 | X | 6877914..6878484 | 1825..2395 | 2855 | 100 | Plus |
| X | 23542271 | X | 6872715..6872923 | 1618..1826 | 1045 | 100 | Plus |
| X | 23542271 | X | 6878545..6878696 | 2394..2545 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:58:10 has no hits.
BO11362.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:25 Download gff for
BO11362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33691-RB | 403..2931 | 17..2547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:39 Download gff for
BO11362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43736-RB | 403..2931 | 17..2547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:20 Download gff for
BO11362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43736-RB | 403..2931 | 17..2547 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:20 Download gff for
BO11362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6869390..6870991 | 17..1618 | 100 | -> | Plus |
| X | 6872716..6872921 | 1619..1824 | 100 | -> | Plus |
| X | 6877914..6878483 | 1825..2394 | 100 | -> | Plus |
| X | 6878546..6878696 | 2395..2547 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:39 Download gff for
BO11362.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6763423..6765024 | 17..1618 | 100 | -> | Plus |
| arm_X | 6766749..6766954 | 1619..1824 | 100 | -> | Plus |
| arm_X | 6771947..6772516 | 1825..2394 | 100 | -> | Plus |
| arm_X | 6772579..6772729 | 2395..2547 | 98 | | Plus |
BO11362.3prime Sequence
690 bp (658 high quality bases) assembled on 2006-04-19
> BO11362.3prime
ATGGTCTAGAAAGCTTGCGCTCGTGCGCGTCCTCTTAGCTGGCGGCTGCT
CCGACTGGCGCGTCATAAAGGTCAGCTGTGTCATGTACTTGATGATGTCG
CGCACTTGCACCAGTGGCATGTTTTCGTTGTAGTTGCGATCGTACTCCAT
CAGGATCTGCACTTGTCGCCGATTTGCCTTGTAGAGCTCCACGCCGAGGG
CCTCGATCAATCGCTTGCAATGATCCAGCGGCACTGAGGGGAAGAAGTTC
TTCTGGAACTCGATGAGCGTCATCAGCTGTTCGGATTCGTTGTAGGCCTT
CATGTTGATGCAGGGCACCAGATGCTTGTCCACGCACACCTTGAGCACCT
TGTAGGGCGTCAGGTTCATGTTGTTGGTGGGTATTTCGGGTATGACGCAC
AGCCGCTGCGCACTATCTGCCGCATTCGCCGCCGCCGCAGCATGAGCAAG
TGCCGCATGGCGCTGCAGATGCATGGAGGCGCTATTCGAGGAGGCATTGC
CATTGCCGTTTGAGCCATTACCCGAGGAGCCGGTGTTGCTTGTCCCATTG
TTGTTACCCGATGCATTCGCCGAGTTGCCTGCATTACCCGAATTCGAGGA
ACTGCGTCCATTCTGCTGGGCATGATGGGCGGCGACGGCGGCCAAACGTT
TGTTGCTGGGCCACCGCTGCCGCCGCTACCTGTTGCTGGG
BO11362.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33691-PA | 2277 | CG33691-RA | 1643..2274 | 650..19 | 3160 | 100 | Minus |
| CG33691-PB | 2532 | CG33691-RB | 1898..2529 | 650..19 | 3160 | 100 | Minus |
| CG33691-PC | 2109 | CG33691-RC | 1475..2106 | 650..19 | 3160 | 100 | Minus |
| CG33691-PA | 2277 | CG33691-RA | 1604..1644 | 690..650 | 205 | 100 | Minus |
| CG33691-PB | 2532 | CG33691-RB | 1859..1899 | 690..650 | 205 | 100 | Minus |
| CG33691-PC | 2109 | CG33691-RC | 1436..1476 | 690..650 | 205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43736-RL | 7668 | CG43736-RL | 4114..4784 | 690..19 | 3335 | 99.9 | Minus |
| CG43736-RI | 7387 | CG43736-RI | 3833..4503 | 690..19 | 3335 | 99.9 | Minus |
| CG43736-RG | 5533 | CG43736-RG | 1979..2649 | 690..19 | 3335 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6877964..6878484 | 690..169 | 2560 | 99.8 | Minus |
| X | 23542271 | X | 6878545..6878696 | 170..19 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:56:29 has no hits.
BO11362.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:46 Download gff for
BO11362.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32737-PF | 1604..2277 | 18..690 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:27:54 Download gff for
BO11362.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33691-PC | 1436..2109 | 18..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:49:42 Download gff for
BO11362.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43736-RF | 2261..2931 | 19..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:29 Download gff for
BO11362.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43736-RG | 1979..2649 | 19..690 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:29 Download gff for
BO11362.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6877964..6878483 | 170..690 | 99 | -> | Minus |
| X | 6878546..6878696 | 19..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:49:42 Download gff for
BO11362.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6771997..6772516 | 170..690 | 99 | -> | Minus |
| arm_X | 6772579..6772729 | 19..169 | 100 | | Minus |
BO11362.pep Sequence
Translation from 16 to 2563
> BO11362.pep
MASEDVQITSVIDANGQSLPLHGNSLGGPLGPPVKQERPDDAEIRELAAK
MKEQQKQQAAQQASRQAAMQHSNGGAIAASSAGGNMQPPITNGNGQTNIM
NYLSRHQKLPNGTMQVVPALASNGRSNGAVSDSGSDKKSSTGPCDEESIQ
GHFGWAQFGKVSIPYIYRQSEKYCSVRMIELKLLGKYLNCLHPDIYSSCT
CVRSYYITDAEARLFIEINHKHCDGEFGRDIFNQKDLVVRLSDASKFYQF
LDICYRKLVSGSKTPSEKCGFIRINKESVVPYTVRNNQQVVPLFYFEGET
ENLKTKAELLNGWDLAYLKFCCKVQGIRNELFSSENVAVISLTDIKSYFP
NGTEFEDYWPSKVVDSNLLIGNRANVNNSVNWTRQPSAPPPKVTTSVSGS
SGPSSSSGGNMGQNTSAASSSANTAGGQQVTSKSQQQHAASAAAAAATAH
QQHLMKQRAAAAAAAAGANGVANAANSFGAAAVAAFNSQAAAAASMLQQS
QGNNRMLSQATVQALASSGWMSGQTNLQLHAQMMAQQTHANANRVGSYRE
HMNNLMMSGSSRQPYSYNNPAISMSSVNNHSGGGGNAPPPLVRSAAGQNA
NHMSLAASAAYLQQHSSAVAQQQVAAAAVAQQQRLAAVAAHHAQQNGRSS
SNSGNAGNSANASGNNNGTSNTGSSGNGSNGNGNASSNSASMHLQRHAAL
AHAAAAANAADSAQRLCVIPEIPTNNMNLTPYKVLKVCVDKHLVPCINMK
AYNESEQLMTLIEFQKNFFPSVPLDHCKRLIEALGVELYKANRRQVQILM
EYDRNYNENMPLVQVRDIIKYMTQLTFMTRQSEQPPAKRTRTSASFLDH
BO11362.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43736-PF | 1228 | CG43736-PF | 1..843 | 1..843 | 4335 | 100 | Plus |
| CG43736-PB | 843 | CG43736-PB | 1..843 | 1..843 | 4335 | 100 | Plus |
| CG43736-PL | 1367 | CG43736-PL | 1..718 | 1..706 | 3187 | 87.6 | Plus |
| CG43736-PI | 1367 | CG43736-PI | 1..718 | 1..706 | 3187 | 87.6 | Plus |
| CG43736-PK | 620 | CG43736-PK | 1..606 | 1..606 | 3119 | 99.7 | Plus |
| CG43736-PL | 1367 | CG43736-PL | 931..1367 | 365..843 | 1261 | 60.1 | Plus |
| CG43736-PI | 1367 | CG43736-PI | 931..1367 | 365..843 | 1261 | 60.1 | Plus |
