Clone Sequence Records
BO11366.3prime Sequence
737 bp (695 high quality bases) assembled on 2006-04-19
> BO11366.3prime
ATGGTCTAGAAAGCTTGCACCAATGGAGCGTCTTATTGGAGTTGTCCATA
GGTTGCCGCAGGAGGGGCAAATATCGCGTCTCTGCAAGTAGGTTTGGATG
CACCCGCGGTGGTACTGGATGTTGCAGGACCCGCAGCGAATGTCCCACAA
CACCAGGCACTTGCACAGCGTGCAGTTTTTTATGTTATCGGCGTGGTTCG
AGCTCAAATAGAAACTGAGCTCGACGAGGCTACGTGGACCTAGGTAGATT
CTGTCGGTCACCTCCATGAAGTAGCCCATTTGGATCCACTTCTGGAGCAG
CTCCTGCATGCGGCTCTTCTTCAACGGCTTCGAGCTGGCCTGTAGGACGA
TATCATTGTAGGCGTCATTCCAGGCGATGTGGCAGTCCTCCTCGGAGGCG
ATCTTGTCCAGCAGTTTCGAAAAGTACTGACACTCCTCGGCAGTGAGCCC
GGTGTTGGCCACGCTGTCCGGCGTAGCGTCCGTCTTGGCGTAAACCAGGT
ACTCCTCGGCCTTGACCGGATACTTGATGAAGACCAGCAACTGGCCCAAG
TCGCTGATGGTGTCATTAATCTCCGCCACCAGTGCCCTAATCGCCTCCTT
GCTGCCGGGCTTTGTAGTCTTGTGGTTGGCACATAGCGGGGCCAGGATAT
CATCGATCAGCTCGAAGCTGAGGTAGCTGTGGTTCTTGCACGCACGCAGG
AACCCGCGTTTCACCAACTCCATGTCGACTGATAACT
BO11366.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11329-PA | 708 | CG11329-RA | 1..705 | 723..19 | 3525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 19:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse1-RB | 977 | CG11329-RB | 78..782 | 723..19 | 3525 | 100 | Minus |
Nse1-RA | 887 | CG11329-RA | 78..782 | 723..19 | 3525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 19:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6676844..6677548 | 19..723 | 3525 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 19:56:05 has no hits.
BO11366.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:54 Download gff for
BO11366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-PA | 1..708 | 15..723 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:04 Download gff for
BO11366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-PA | 1..708 | 15..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:34:15 Download gff for
BO11366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-RA | 69..790 | 10..732 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:47:09 Download gff for
BO11366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nse1-RA | 69..790 | 10..732 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:47:09 Download gff for
BO11366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6676836..6677557 | 10..732 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:34:15 Download gff for
BO11366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6676836..6677557 | 10..732 | 98 | | Plus |
BO11366.5prime Sequence
737 bp (692 high quality bases) assembled on 2006-04-19
> BO11366.5prime
GAAGTTATCAGTCGACATGGAGTTGGTGAAACGCGGGTTCCTGCGTGCGT
GCAAGAACCACAGCTACCTCAGCTTCGAGCTGATCGATGATATCCTGGCC
CCGCTATGTGCCAACCACAAGACTACAAAGCCCGGCAGCAAGGAGGCGAT
TAGGGCACTGGTGGCGGAGATTAATGACACCATCAGCGACTTGGGCCAGT
TGCTGGTCTTCATCAAGTATCCGGTCAAGGCCGAGGAGTACCTGGTTTAC
GCCAAGACGGACGCTACGCCGGACAGCGTGGCCAACACCGGGCTCACTGC
CGAGGAGTGTCAGTACTTTTCGAAACTGCTGGACAAGATCGCCTCCGAGG
AGGACTGCCACATCGCCTGGAATGACGCCTACAATGATATCGTCCTACAG
GCCAGCTCGAAGCCGTTGAAGAAGAGCCGCATGCAGGAGCTGCTCCAGAA
GTGGATCCAAATGGGCTACTTCATGGAGGTGACCGACAGAATCTACCTAG
GTCCACGTAGCCTCGTCGAGCTCAGTTTCTATTTGAGCTCGAACCACGCC
GATAACATAAAAAACTGCACGCTGTGCAAGTGCCTGGTGTTGTGGGACAT
TCGCTGCGGGTCCTGCAACATCCAGTACCACCGCGGGTGCATCCAAACCT
ACTTGCAGAGACGCGATATTTGCCCCTCCTGCGGCAACCTATGGACAACT
CCAATAAGACGCTCCCTTGGTGCAAGCTTTCTAGACC
BO11366.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11329-PA | 708 | CG11329-RA | 1..705 | 17..721 | 3500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse1-RB | 977 | CG11329-RB | 78..782 | 17..721 | 3510 | 99.9 | Plus |
Nse1-RA | 887 | CG11329-RA | 78..782 | 17..721 | 3510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6676844..6677548 | 721..17 | 3510 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:45:03 has no hits.
BO11366.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:55 Download gff for
BO11366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-PA | 1..708 | 17..725 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:05 Download gff for
BO11366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-PA | 1..708 | 17..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:37:20 Download gff for
BO11366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-RA | 69..790 | 8..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:53 Download gff for
BO11366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nse1-RA | 69..790 | 8..730 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:53 Download gff for
BO11366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6676836..6677557 | 8..730 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:37:20 Download gff for
BO11366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6676836..6677557 | 8..730 | 98 | | Minus |
BO11366.complete Sequence
739 bp assembled on 2006-10-10
GenBank Submission: FJ632069
> BO11366.complete
GAAGTTATCAGTCGACATGGAGTTGGTGAAACGCGGGTTCCTGCGTGCGT
GCAAGAACCACAGCTACCTCAGCTTCGAGCTGATCGATGATATCCTGGCC
CCGCTATGTGCCAACCACAAGACTACAAAGCCCGGCAGCAAGGAGGCGAT
TAGGGCACTGGTGGCGGAGATTAATGACACCATCAGCGACTTGGGCCAGT
TGCTGGTCTTCATCAAGTATCCGGTCAAGGCCGAGGAGTACCTGGTTTAC
GCCAAGACGGACGCTACGCCGGACAGCGTGGCCAACACCGGGCTCACTGC
CGAGGAGTGTCAGTACTTTTCGAAACTGCTGGACAAGATCGCCTCCGAGG
AGGACTGCCACATCGCCTGGAATGACGCCTACAATGATATCGTCCTACAG
GCCAGCTCGAAGCCGTTGAAGAAGAGCCGCATGCAGGAGCTGCTCCAGAA
GTGGATCCAAATGGGCTACTTCATGGAGGTGACCGACAGAATCTACCTAG
GTCCACGTAGCCTCGTCGAGCTCAGTTTCTATTTGAGCTCGAACCACGCC
GATAACATAAAAAACTGCACGCTGTGCAAGTGCCTGGTGTTGTGGGACAT
TCGCTGCGGGTCCTGCAACATCCAGTACCACCGCGGGTGCATCCAAACCT
ACTTGCAGAGACGCGATATTTGCCCCTCCTGCGGCAACCTATGGACAACT
CCAATAAGACGCTCCATTGGTGCAAGCTTTCTAGACCAT
BO11366.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse1-RB | 708 | CG11329-PB | 1..705 | 17..721 | 3525 | 100 | Plus |
Nse1-RA | 708 | CG11329-PA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse1-RB | 977 | CG11329-RB | 78..782 | 17..721 | 3525 | 100 | Plus |
Nse1-RA | 887 | CG11329-RA | 78..782 | 17..721 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6676844..6677548 | 721..17 | 3525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:05:30 has no hits.
BO11366.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:32 Download gff for
BO11366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-RA | 1..708 | 17..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:38 Download gff for
BO11366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-RA | 50..771 | 8..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:22 Download gff for
BO11366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-RA | 78..782 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:32 Download gff for
BO11366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11329-RA | 50..771 | 8..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:03 Download gff for
BO11366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nse1-RA | 78..782 | 17..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:03 Download gff for
BO11366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6676842..6677548 | 17..723 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:22 Download gff for
BO11366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6676842..6677548 | 17..723 | 99 | | Minus |
BO11366.pep Sequence
Translation from 16 to 739
> BO11366.pep
MELVKRGFLRACKNHSYLSFELIDDILAPLCANHKTTKPGSKEAIRALVA
EINDTISDLGQLLVFIKYPVKAEEYLVYAKTDATPDSVANTGLTAEECQY
FSKLLDKIASEEDCHIAWNDAYNDIVLQASSKPLKKSRMQELLQKWIQMG
YFMEVTDRIYLGPRSLVELSFYLSSNHADNIKNCTLCKCLVLWDIRCGSC
NIQYHRGCIQTYLQRRDICPSCGNLWTTPIRRSIGASFLDH
BO11366.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nse1-PB | 235 | CG11329-PB | 1..235 | 1..235 | 1253 | 100 | Plus |
Nse1-PA | 235 | CG11329-PA | 1..235 | 1..235 | 1253 | 100 | Plus |