Clone BO11366 Report

Search the DGRC for BO11366

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:113
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG11329-RA
Protein status:BO11366.pep: validated full length
Sequenced Size:739

Clone Sequence Records

BO11366.3prime Sequence

737 bp (695 high quality bases) assembled on 2006-04-19

> BO11366.3prime
ATGGTCTAGAAAGCTTGCACCAATGGAGCGTCTTATTGGAGTTGTCCATA
GGTTGCCGCAGGAGGGGCAAATATCGCGTCTCTGCAAGTAGGTTTGGATG
CACCCGCGGTGGTACTGGATGTTGCAGGACCCGCAGCGAATGTCCCACAA
CACCAGGCACTTGCACAGCGTGCAGTTTTTTATGTTATCGGCGTGGTTCG
AGCTCAAATAGAAACTGAGCTCGACGAGGCTACGTGGACCTAGGTAGATT
CTGTCGGTCACCTCCATGAAGTAGCCCATTTGGATCCACTTCTGGAGCAG
CTCCTGCATGCGGCTCTTCTTCAACGGCTTCGAGCTGGCCTGTAGGACGA
TATCATTGTAGGCGTCATTCCAGGCGATGTGGCAGTCCTCCTCGGAGGCG
ATCTTGTCCAGCAGTTTCGAAAAGTACTGACACTCCTCGGCAGTGAGCCC
GGTGTTGGCCACGCTGTCCGGCGTAGCGTCCGTCTTGGCGTAAACCAGGT
ACTCCTCGGCCTTGACCGGATACTTGATGAAGACCAGCAACTGGCCCAAG
TCGCTGATGGTGTCATTAATCTCCGCCACCAGTGCCCTAATCGCCTCCTT
GCTGCCGGGCTTTGTAGTCTTGTGGTTGGCACATAGCGGGGCCAGGATAT
CATCGATCAGCTCGAAGCTGAGGTAGCTGTGGTTCTTGCACGCACGCAGG
AACCCGCGTTTCACCAACTCCATGTCGACTGATAACT

BO11366.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11329-PA 708 CG11329-RA 1..705 723..19 3525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 19:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
Nse1-RB 977 CG11329-RB 78..782 723..19 3525 100 Minus
Nse1-RA 887 CG11329-RA 78..782 723..19 3525 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 19:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6676844..6677548 19..723 3525 100 Plus
Blast to na_te.dros performed on 2015-01-31 19:56:05 has no hits.

BO11366.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:54 Download gff for BO11366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11329-PA 1..708 15..723 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:04 Download gff for BO11366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11329-PA 1..708 15..723 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:34:15 Download gff for BO11366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11329-RA 69..790 10..732 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:47:09 Download gff for BO11366.3prime
Subject Subject Range Query Range Percent Splice Strand
Nse1-RA 69..790 10..732 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:47:09 Download gff for BO11366.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6676836..6677557 10..732 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:34:15 Download gff for BO11366.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6676836..6677557 10..732 98   Plus

BO11366.5prime Sequence

737 bp (692 high quality bases) assembled on 2006-04-19

> BO11366.5prime
GAAGTTATCAGTCGACATGGAGTTGGTGAAACGCGGGTTCCTGCGTGCGT
GCAAGAACCACAGCTACCTCAGCTTCGAGCTGATCGATGATATCCTGGCC
CCGCTATGTGCCAACCACAAGACTACAAAGCCCGGCAGCAAGGAGGCGAT
TAGGGCACTGGTGGCGGAGATTAATGACACCATCAGCGACTTGGGCCAGT
TGCTGGTCTTCATCAAGTATCCGGTCAAGGCCGAGGAGTACCTGGTTTAC
GCCAAGACGGACGCTACGCCGGACAGCGTGGCCAACACCGGGCTCACTGC
CGAGGAGTGTCAGTACTTTTCGAAACTGCTGGACAAGATCGCCTCCGAGG
AGGACTGCCACATCGCCTGGAATGACGCCTACAATGATATCGTCCTACAG
GCCAGCTCGAAGCCGTTGAAGAAGAGCCGCATGCAGGAGCTGCTCCAGAA
GTGGATCCAAATGGGCTACTTCATGGAGGTGACCGACAGAATCTACCTAG
GTCCACGTAGCCTCGTCGAGCTCAGTTTCTATTTGAGCTCGAACCACGCC
GATAACATAAAAAACTGCACGCTGTGCAAGTGCCTGGTGTTGTGGGACAT
TCGCTGCGGGTCCTGCAACATCCAGTACCACCGCGGGTGCATCCAAACCT
ACTTGCAGAGACGCGATATTTGCCCCTCCTGCGGCAACCTATGGACAACT
CCAATAAGACGCTCCCTTGGTGCAAGCTTTCTAGACC

BO11366.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11329-PA 708 CG11329-RA 1..705 17..721 3500 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Nse1-RB 977 CG11329-RB 78..782 17..721 3510 99.9 Plus
Nse1-RA 887 CG11329-RA 78..782 17..721 3510 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6676844..6677548 721..17 3510 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 10:45:03 has no hits.

BO11366.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:55 Download gff for BO11366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11329-PA 1..708 17..725 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:05 Download gff for BO11366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11329-PA 1..708 17..725 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:37:20 Download gff for BO11366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11329-RA 69..790 8..730 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:53 Download gff for BO11366.5prime
Subject Subject Range Query Range Percent Splice Strand
Nse1-RA 69..790 8..730 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:53 Download gff for BO11366.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6676836..6677557 8..730 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:37:20 Download gff for BO11366.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6676836..6677557 8..730 98   Minus

BO11366.complete Sequence

739 bp assembled on 2006-10-10

GenBank Submission: FJ632069

> BO11366.complete
GAAGTTATCAGTCGACATGGAGTTGGTGAAACGCGGGTTCCTGCGTGCGT
GCAAGAACCACAGCTACCTCAGCTTCGAGCTGATCGATGATATCCTGGCC
CCGCTATGTGCCAACCACAAGACTACAAAGCCCGGCAGCAAGGAGGCGAT
TAGGGCACTGGTGGCGGAGATTAATGACACCATCAGCGACTTGGGCCAGT
TGCTGGTCTTCATCAAGTATCCGGTCAAGGCCGAGGAGTACCTGGTTTAC
GCCAAGACGGACGCTACGCCGGACAGCGTGGCCAACACCGGGCTCACTGC
CGAGGAGTGTCAGTACTTTTCGAAACTGCTGGACAAGATCGCCTCCGAGG
AGGACTGCCACATCGCCTGGAATGACGCCTACAATGATATCGTCCTACAG
GCCAGCTCGAAGCCGTTGAAGAAGAGCCGCATGCAGGAGCTGCTCCAGAA
GTGGATCCAAATGGGCTACTTCATGGAGGTGACCGACAGAATCTACCTAG
GTCCACGTAGCCTCGTCGAGCTCAGTTTCTATTTGAGCTCGAACCACGCC
GATAACATAAAAAACTGCACGCTGTGCAAGTGCCTGGTGTTGTGGGACAT
TCGCTGCGGGTCCTGCAACATCCAGTACCACCGCGGGTGCATCCAAACCT
ACTTGCAGAGACGCGATATTTGCCCCTCCTGCGGCAACCTATGGACAACT
CCAATAAGACGCTCCATTGGTGCAAGCTTTCTAGACCAT

BO11366.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
Nse1-RB 708 CG11329-PB 1..705 17..721 3525 100 Plus
Nse1-RA 708 CG11329-PA 1..705 17..721 3525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
Nse1-RB 977 CG11329-RB 78..782 17..721 3525 100 Plus
Nse1-RA 887 CG11329-RA 78..782 17..721 3525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6676844..6677548 721..17 3525 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:05:30 has no hits.

BO11366.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:32 Download gff for BO11366.complete
Subject Subject Range Query Range Percent Splice Strand
CG11329-RA 1..708 17..725 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:38 Download gff for BO11366.complete
Subject Subject Range Query Range Percent Splice Strand
CG11329-RA 50..771 8..730 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:22 Download gff for BO11366.complete
Subject Subject Range Query Range Percent Splice Strand
CG11329-RA 78..782 17..723 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:32 Download gff for BO11366.complete
Subject Subject Range Query Range Percent Splice Strand
CG11329-RA 50..771 8..730 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:03 Download gff for BO11366.complete
Subject Subject Range Query Range Percent Splice Strand
Nse1-RA 78..782 17..723 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:03 Download gff for BO11366.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6676842..6677548 17..723 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:22 Download gff for BO11366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6676842..6677548 17..723 99   Minus

BO11366.pep Sequence

Translation from 16 to 739

> BO11366.pep
MELVKRGFLRACKNHSYLSFELIDDILAPLCANHKTTKPGSKEAIRALVA
EINDTISDLGQLLVFIKYPVKAEEYLVYAKTDATPDSVANTGLTAEECQY
FSKLLDKIASEEDCHIAWNDAYNDIVLQASSKPLKKSRMQELLQKWIQMG
YFMEVTDRIYLGPRSLVELSFYLSSNHADNIKNCTLCKCLVLWDIRCGSC
NIQYHRGCIQTYLQRRDICPSCGNLWTTPIRRSIGASFLDH

BO11366.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
Nse1-PB 235 CG11329-PB 1..235 1..235 1253 100 Plus
Nse1-PA 235 CG11329-PA 1..235 1..235 1253 100 Plus