Clone Sequence Records
BO11369.3prime Sequence
698 bp (697 high quality bases) assembled on 2006-04-19
> BO11369.3prime
ATGGTCTAGAAAGCTTGCGGCGGCCTCCTCCTCCTCCTCTTCACCCTTGC
CGGTGAGCATCTCGATCAGGGCGGCGGTATCGATCTGGTTCTTGTCGTCG
ATCACCATCTGATCGTAGGCATCATCAACCTCCTTCATGGTGAACTTGTC
ACCGAAGTTCATGAGCATTTCGCGGAATTTGTCACCGTCGATGAGACCAT
CGTTATCGAATGTTTTGAAGGCAGCAATAACAACTTCGTCTTCATCGTTG
GCACCGGAGGTGGCCATGCGGTTGGCGAACAGGGTCAGCAACTGGGTGAA
GTTGATCGGACCCGAGGCCTCGCCCAGCATGGCGTCCAACTCCTTGTCGT
TGGCGATCTTGCCGACGGAGTCGAAGGCAGCGCGCAGATCGTTCTTGCCA
ATAATACCGTCCTTGTCGGCATCCATGAGTTGGAAGGCCTCCTTGAACTC
GGCGATCTGCTTCTGGGAGAACACAGAGAAGACCGAGGAGCCAGCGCGCT
TCGACTTCCTGGAGCCACGGGATCCGCCCGACGCTCTCTTCGAACCAGTG
GCAGATGCGGCCGGGGCAGGAGTGGCAGCTGGTGCCGGGGTTGCTGCCTC
GGATGCGGCCTCAGAAGCGGTTTCGGAAGTACCACCCTCTTCCTTGGTCT
TCTTCTTCTTAACCTTCTTCTTCTCATCGGCCATGTCGACTGATAACT
BO11369.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2184-PA | 669 | Mlc2-RA | 1..666 | 684..19 | 3330 | 100 | Minus |
CG2184-PB | 606 | Mlc2-RB | 265..603 | 357..19 | 1695 | 100 | Minus |
CG2184-PB | 606 | Mlc2-RB | 1..264 | 684..421 | 1320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc2-RA | 2286 | CG2184-RA | 65..731 | 685..19 | 3335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30172993..30173414 | 19..440 | 2110 | 100 | Plus |
3R | 32079331 | 3R | 30173571..30173815 | 438..682 | 1225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:02:02 has no hits.
BO11369.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:59 Download gff for
BO11369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-PA | 1..669 | 15..684 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:11 Download gff for
BO11369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2184-PA | 1..669 | 15..684 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:08:24 Download gff for
BO11369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 55..735 | 14..698 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:57 Download gff for
BO11369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 55..735 | 14..698 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:57 Download gff for
BO11369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30172989..30173412 | 14..438 | 99 | <- | Plus |
3R | 30173572..30173823 | 439..693 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:08:24 Download gff for
BO11369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25998711..25999134 | 14..438 | 99 | <- | Plus |
arm_3R | 25999294..25999545 | 439..693 | 98 | | Plus |
BO11369.5prime Sequence
698 bp (697 high quality bases) assembled on 2006-04-19
> BO11369.5prime
GAAGTTATCAGTCGACATGGCCGATGAGAAGAAGAAGGTTAAGAAGAAGA
AGACCAAGGAAGAGGGTGGTACTTCCGAAACCGCTTCTGAGGCCGCATCC
GAGGCAGCAACCCCGGCACCAGCTGCCACTCCTGCCCCGGCCGCATCTGC
CACTGGTTCGAAGAGAGCGTCGGGCGGATCCCGTGGCTCCAGGAAGTCGA
AGCGCGCTGGCTCCTCGGTCTTCTCTGTGTTCTCCCAGAAGCAGATCGCC
GAGTTCAAGGAGGCCTTCCAACTCATGGATGCCGACAAGGACGGTATTAT
TGGCAAGAACGATCTGCGCGCTGCCTTCGACTCCGTCGGCAAGATCGCCA
ACGACAAGGAGTTGGACGCCATGCTGGGCGAGGCCTCGGGTCCGATCAAC
TTCACCCAGTTGCTGACCCTGTTCGCCAACCGCATGGCCACCTCCGGTGC
CAACGATGAAGACGAAGTTGTTATTGCTGCCTTCAAAACATTCGATAACG
ATGGTCTCATCGACGGTGACAAATTCCGCGAAATGCTCATGAACTTCGGT
GACAAGTTCACCATGAAGGAGGTTGATGATGCCTACGATCAGATGGTGAT
CGACGACAAGAACCAGATCGATACCGCCGCCCTGATCGAGATGCTCACCG
GCAAGGGTGAAGAGGAGGAGGAGGAGGCCGCCGCAAGCTTTCTAGACC
BO11369.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2184-PA | 669 | Mlc2-RA | 1..666 | 17..682 | 3330 | 100 | Plus |
CG2184-PB | 606 | Mlc2-RB | 265..603 | 344..682 | 1695 | 100 | Plus |
CG2184-PB | 606 | Mlc2-RB | 1..264 | 17..280 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc2-RA | 2286 | CG2184-RA | 65..731 | 16..682 | 3335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30172993..30173414 | 682..261 | 2110 | 100 | Minus |
3R | 32079331 | 3R | 30173571..30173815 | 263..19 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:47:16 has no hits.
BO11369.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:00 Download gff for
BO11369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-PA | 1..669 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:12 Download gff for
BO11369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2184-PA | 1..669 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:37:51 Download gff for
BO11369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 54..735 | 2..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:15 Download gff for
BO11369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 54..735 | 2..687 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:15 Download gff for
BO11369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30172989..30173412 | 263..687 | 99 | <- | Minus |
3R | 30173572..30173823 | 8..262 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:37:51 Download gff for
BO11369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25998711..25999134 | 263..687 | 99 | <- | Minus |
arm_3R | 25999294..25999545 | 8..262 | 98 | | Minus |
BO11369.complete Sequence
700 bp assembled on 2006-10-10
GenBank Submission: FJ632070
> BO11369.complete
GAAGTTATCAGTCGACATGGCCGATGAGAAGAAGAAGGTTAAGAAGAAGA
AGACCAAGGAAGAGGGTGGTACTTCCGAAACCGCTTCTGAGGCCGCATCC
GAGGCAGCAACCCCGGCACCAGCTGCCACTCCTGCCCCGGCCGCATCTGC
CACTGGTTCGAAGAGAGCGTCGGGCGGATCCCGTGGCTCCAGGAAGTCGA
AGCGCGCTGGCTCCTCGGTCTTCTCTGTGTTCTCCCAGAAGCAGATCGCC
GAGTTCAAGGAGGCCTTCCAACTCATGGATGCCGACAAGGACGGTATTAT
TGGCAAGAACGATCTGCGCGCTGCCTTCGACTCCGTCGGCAAGATCGCCA
ACGACAAGGAGTTGGACGCCATGCTGGGCGAGGCCTCGGGTCCGATCAAC
TTCACCCAGTTGCTGACCCTGTTCGCCAACCGCATGGCCACCTCCGGTGC
CAACGATGAAGACGAAGTTGTTATTGCTGCCTTCAAAACATTCGATAACG
ATGGTCTCATCGACGGTGACAAATTCCGCGAAATGCTCATGAACTTCGGT
GACAAGTTCACCATGAAGGAGGTTGATGATGCCTACGATCAGATGGTGAT
CGACGACAAGAACCAGATCGATACCGCCGCCCTGATCGAGATGCTCACCG
GCAAGGGTGAAGAGGAGGAGGAGGAGGCCGCCGCAAGCTTTCTAGACCAT
BO11369.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc2-RA | 669 | CG2184-PA | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc2-RA | 2286 | CG2184-RA | 65..731 | 16..682 | 3335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30172993..30173414 | 682..261 | 2110 | 100 | Minus |
3R | 32079331 | 3R | 30173571..30173815 | 263..19 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:44:47 has no hits.
BO11369.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:05 Download gff for
BO11369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 1..669 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:47 Download gff for
BO11369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 54..735 | 2..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:37 Download gff for
BO11369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 66..731 | 17..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:05 Download gff for
BO11369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 54..735 | 2..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:10 Download gff for
BO11369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mlc2-RA | 66..731 | 17..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:10 Download gff for
BO11369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30172991..30173412 | 263..684 | 99 | <- | Minus |
3R | 30173572..30173816 | 17..262 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:37 Download gff for
BO11369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25998713..25999134 | 263..684 | 99 | <- | Minus |
arm_3R | 25999294..25999538 | 17..262 | 99 | | Minus |
BO11369.pep Sequence
Translation from 16 to 700
> BO11369.pep
MADEKKKVKKKKTKEEGGTSETASEAASEAATPAPAATPAPAASATGSKR
ASGGSRGSRKSKRAGSSVFSVFSQKQIAEFKEAFQLMDADKDGIIGKNDL
RAAFDSVGKIANDKELDAMLGEASGPINFTQLLTLFANRMATSGANDEDE
VVIAAFKTFDNDGLIDGDKFREMLMNFGDKFTMKEVDDAYDQMVIDDKNQ
IDTAALIEMLTGKGEEEEEEAAASFLDH
BO11369.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mlc2-PA | 222 | CG2184-PA | 1..222 | 1..222 | 1103 | 100 | Plus |
sqh-PE | 174 | CG3595-PE | 2..150 | 48..195 | 303 | 44.1 | Plus |
sqh-PD | 174 | CG3595-PD | 2..150 | 48..195 | 303 | 44.1 | Plus |
sqh-PC | 174 | CG3595-PC | 2..150 | 48..195 | 303 | 44.1 | Plus |
sqh-PB | 174 | CG3595-PB | 2..150 | 48..195 | 303 | 44.1 | Plus |