Clone BO11369 Report

Search the DGRC for BO11369

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:113
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptMlc2-RA
Protein status:BO11369.pep: validated full length
Sequenced Size:700

Clone Sequence Records

BO11369.3prime Sequence

698 bp (697 high quality bases) assembled on 2006-04-19

> BO11369.3prime
ATGGTCTAGAAAGCTTGCGGCGGCCTCCTCCTCCTCCTCTTCACCCTTGC
CGGTGAGCATCTCGATCAGGGCGGCGGTATCGATCTGGTTCTTGTCGTCG
ATCACCATCTGATCGTAGGCATCATCAACCTCCTTCATGGTGAACTTGTC
ACCGAAGTTCATGAGCATTTCGCGGAATTTGTCACCGTCGATGAGACCAT
CGTTATCGAATGTTTTGAAGGCAGCAATAACAACTTCGTCTTCATCGTTG
GCACCGGAGGTGGCCATGCGGTTGGCGAACAGGGTCAGCAACTGGGTGAA
GTTGATCGGACCCGAGGCCTCGCCCAGCATGGCGTCCAACTCCTTGTCGT
TGGCGATCTTGCCGACGGAGTCGAAGGCAGCGCGCAGATCGTTCTTGCCA
ATAATACCGTCCTTGTCGGCATCCATGAGTTGGAAGGCCTCCTTGAACTC
GGCGATCTGCTTCTGGGAGAACACAGAGAAGACCGAGGAGCCAGCGCGCT
TCGACTTCCTGGAGCCACGGGATCCGCCCGACGCTCTCTTCGAACCAGTG
GCAGATGCGGCCGGGGCAGGAGTGGCAGCTGGTGCCGGGGTTGCTGCCTC
GGATGCGGCCTCAGAAGCGGTTTCGGAAGTACCACCCTCTTCCTTGGTCT
TCTTCTTCTTAACCTTCTTCTTCTCATCGGCCATGTCGACTGATAACT

BO11369.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2184-PA 669 Mlc2-RA 1..666 684..19 3330 100 Minus
CG2184-PB 606 Mlc2-RB 265..603 357..19 1695 100 Minus
CG2184-PB 606 Mlc2-RB 1..264 684..421 1320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-RA 2286 CG2184-RA 65..731 685..19 3335 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30172993..30173414 19..440 2110 100 Plus
3R 32079331 3R 30173571..30173815 438..682 1225 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:02:02 has no hits.

BO11369.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:04:59 Download gff for BO11369.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlc2-PA 1..669 15..684 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:11 Download gff for BO11369.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2184-PA 1..669 15..684 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:08:24 Download gff for BO11369.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 55..735 14..698 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:57 Download gff for BO11369.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 55..735 14..698 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:57 Download gff for BO11369.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30172989..30173412 14..438 99 <- Plus
3R 30173572..30173823 439..693 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:08:24 Download gff for BO11369.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25998711..25999134 14..438 99 <- Plus
arm_3R 25999294..25999545 439..693 98   Plus

BO11369.5prime Sequence

698 bp (697 high quality bases) assembled on 2006-04-19

> BO11369.5prime
GAAGTTATCAGTCGACATGGCCGATGAGAAGAAGAAGGTTAAGAAGAAGA
AGACCAAGGAAGAGGGTGGTACTTCCGAAACCGCTTCTGAGGCCGCATCC
GAGGCAGCAACCCCGGCACCAGCTGCCACTCCTGCCCCGGCCGCATCTGC
CACTGGTTCGAAGAGAGCGTCGGGCGGATCCCGTGGCTCCAGGAAGTCGA
AGCGCGCTGGCTCCTCGGTCTTCTCTGTGTTCTCCCAGAAGCAGATCGCC
GAGTTCAAGGAGGCCTTCCAACTCATGGATGCCGACAAGGACGGTATTAT
TGGCAAGAACGATCTGCGCGCTGCCTTCGACTCCGTCGGCAAGATCGCCA
ACGACAAGGAGTTGGACGCCATGCTGGGCGAGGCCTCGGGTCCGATCAAC
TTCACCCAGTTGCTGACCCTGTTCGCCAACCGCATGGCCACCTCCGGTGC
CAACGATGAAGACGAAGTTGTTATTGCTGCCTTCAAAACATTCGATAACG
ATGGTCTCATCGACGGTGACAAATTCCGCGAAATGCTCATGAACTTCGGT
GACAAGTTCACCATGAAGGAGGTTGATGATGCCTACGATCAGATGGTGAT
CGACGACAAGAACCAGATCGATACCGCCGCCCTGATCGAGATGCTCACCG
GCAAGGGTGAAGAGGAGGAGGAGGAGGCCGCCGCAAGCTTTCTAGACC

BO11369.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2184-PA 669 Mlc2-RA 1..666 17..682 3330 100 Plus
CG2184-PB 606 Mlc2-RB 265..603 344..682 1695 100 Plus
CG2184-PB 606 Mlc2-RB 1..264 17..280 1320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-RA 2286 CG2184-RA 65..731 16..682 3335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30172993..30173414 682..261 2110 100 Minus
3R 32079331 3R 30173571..30173815 263..19 1225 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:47:16 has no hits.

BO11369.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:00 Download gff for BO11369.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlc2-PA 1..669 17..686 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:12 Download gff for BO11369.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2184-PA 1..669 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:37:51 Download gff for BO11369.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 54..735 2..687 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:15 Download gff for BO11369.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 54..735 2..687 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:15 Download gff for BO11369.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30172989..30173412 263..687 99 <- Minus
3R 30173572..30173823 8..262 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:37:51 Download gff for BO11369.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25998711..25999134 263..687 99 <- Minus
arm_3R 25999294..25999545 8..262 98   Minus

BO11369.complete Sequence

700 bp assembled on 2006-10-10

GenBank Submission: FJ632070

> BO11369.complete
GAAGTTATCAGTCGACATGGCCGATGAGAAGAAGAAGGTTAAGAAGAAGA
AGACCAAGGAAGAGGGTGGTACTTCCGAAACCGCTTCTGAGGCCGCATCC
GAGGCAGCAACCCCGGCACCAGCTGCCACTCCTGCCCCGGCCGCATCTGC
CACTGGTTCGAAGAGAGCGTCGGGCGGATCCCGTGGCTCCAGGAAGTCGA
AGCGCGCTGGCTCCTCGGTCTTCTCTGTGTTCTCCCAGAAGCAGATCGCC
GAGTTCAAGGAGGCCTTCCAACTCATGGATGCCGACAAGGACGGTATTAT
TGGCAAGAACGATCTGCGCGCTGCCTTCGACTCCGTCGGCAAGATCGCCA
ACGACAAGGAGTTGGACGCCATGCTGGGCGAGGCCTCGGGTCCGATCAAC
TTCACCCAGTTGCTGACCCTGTTCGCCAACCGCATGGCCACCTCCGGTGC
CAACGATGAAGACGAAGTTGTTATTGCTGCCTTCAAAACATTCGATAACG
ATGGTCTCATCGACGGTGACAAATTCCGCGAAATGCTCATGAACTTCGGT
GACAAGTTCACCATGAAGGAGGTTGATGATGCCTACGATCAGATGGTGAT
CGACGACAAGAACCAGATCGATACCGCCGCCCTGATCGAGATGCTCACCG
GCAAGGGTGAAGAGGAGGAGGAGGAGGCCGCCGCAAGCTTTCTAGACCAT

BO11369.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-RA 669 CG2184-PA 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-RA 2286 CG2184-RA 65..731 16..682 3335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30172993..30173414 682..261 2110 100 Minus
3R 32079331 3R 30173571..30173815 263..19 1225 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:44:47 has no hits.

BO11369.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:05 Download gff for BO11369.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 1..669 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:47 Download gff for BO11369.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 54..735 2..687 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:37 Download gff for BO11369.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 66..731 17..684 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:05 Download gff for BO11369.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 54..735 2..687 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:10 Download gff for BO11369.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 66..731 17..684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:10 Download gff for BO11369.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30172991..30173412 263..684 99 <- Minus
3R 30173572..30173816 17..262 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:37 Download gff for BO11369.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25998713..25999134 263..684 99 <- Minus
arm_3R 25999294..25999538 17..262 99   Minus

BO11369.pep Sequence

Translation from 16 to 700

> BO11369.pep
MADEKKKVKKKKTKEEGGTSETASEAASEAATPAPAATPAPAASATGSKR
ASGGSRGSRKSKRAGSSVFSVFSQKQIAEFKEAFQLMDADKDGIIGKNDL
RAAFDSVGKIANDKELDAMLGEASGPINFTQLLTLFANRMATSGANDEDE
VVIAAFKTFDNDGLIDGDKFREMLMNFGDKFTMKEVDDAYDQMVIDDKNQ
IDTAALIEMLTGKGEEEEEEAAASFLDH

BO11369.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-PA 222 CG2184-PA 1..222 1..222 1103 100 Plus
sqh-PE 174 CG3595-PE 2..150 48..195 303 44.1 Plus
sqh-PD 174 CG3595-PD 2..150 48..195 303 44.1 Plus
sqh-PC 174 CG3595-PC 2..150 48..195 303 44.1 Plus
sqh-PB 174 CG3595-PB 2..150 48..195 303 44.1 Plus