Clone Sequence Records
BO11372.3prime Sequence
806 bp (727 high quality bases) assembled on 2006-04-19
> BO11372.3prime
ATGGTCTAGAAAGCTTGCATACCGTCCACCACCACCACCGCCTCCTCCGC
CACCACCTTTGCGGCGATCGCGATCGTTTCCGCGATCATTGCCACGCATG
TTGTCCCGCTCGTTGTTCAAGTAGTTTCCTCCGCCGACACCGTCGCCTCT
GCCGCCTCCTCTTCGACCCGGGGATCGGGACCTGCTGCGGGAGCCGCGAC
GGCGTCCAGGGGATCGGGAACGGGAGCGGGCACGACGGCGGCGGGAGTAG
AGGTACCTTCGCAGCTCACGCGAGATGGGCTTCAAGTGCATGAAGTTGCA
GAAGCCGGAGCGGGTACATTCGCCCATCTCGTACTGCCGACAGCAAGCCT
CGCGGAAGTCGGTCACCGGCGATAGTTCCGAGTACACCGGTCGACCACCG
AACCACCGGTTGTTCAAATCGTTTGCCGCCTTTTCCGCATCAGCCTCGTT
ACGGAATTTGATGTACACATTGCCGACCAGATGGTCGCCTAGGTTGTCGC
ACACGTTCATCTCCTCGATTTCCCCGTACTTGTCCTCGCACTCTACGAAC
ACGTCCTCGAAAAAATTGTCGTAGTGTTCTTGCATCTCCTCGTCGGAGAC
GTTGGCCACCAGATGGGAGCCATCCGCGGATTTGGCGGAGTTTTGGGGGT
TCACGTATAGATTTTGGAGAAGCACCGTCTGCGAGAAAGTGGGTTTGTTG
TGGATGCGAGAGCACCGGTCGCCGTGGCGGCAGGCGCCGATCTTGAAGTA
GAACGAACAGTTCACCTTGTCCTTTTCCGTGCCAAAAATGGATGCCAAGT
ACTCGG
BO11372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3582-PA | 795 | U2af38-RA | 5..792 | 806..19 | 3940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af38-RB | 1655 | CG3582-RB | 202..989 | 806..19 | 3940 | 100 | Minus |
| U2af38-RA | 1261 | CG3582-RA | 202..989 | 806..19 | 3940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 293625..294372 | 19..766 | 3740 | 100 | Plus |
| 2L | 23513712 | 2L | 294440..294480 | 766..806 | 205 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 4569..4606 | 295..332 | 118 | 78.9 | Plus |
BO11372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:05 Download gff for
BO11372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3582-PA | 5..795 | 15..806 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:19 Download gff for
BO11372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3582-PA | 5..795 | 15..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:12 Download gff for
BO11372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af38-RA | 202..997 | 11..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:34 Download gff for
BO11372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af38-RA | 202..997 | 11..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:34 Download gff for
BO11372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 293617..294372 | 11..766 | 99 | <- | Plus |
| 2L | 294441..294480 | 767..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:12 Download gff for
BO11372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 293617..294372 | 11..766 | 99 | <- | Plus |
| arm_2L | 294441..294480 | 767..806 | 100 | | Plus |
BO11372.5prime Sequence
817 bp (759 high quality bases) assembled on 2006-04-19
> BO11372.5prime
GAAGTTATCAGTCGACATGGCCGAGTACTTGGCATCCATTTTTGGCACGG
AAAAGGACAAGGTGAACTGTTCGTTCTACTTCAAGATCGGCGCCTGCCGC
CACGGCGACCGGTGCTCTCGCATCCACAACAAACCCACTTTCTCGCAGAC
GGTGCTTCTCCAAAATCTATACGTGAACCCCCAAAACTCCGCCAAATCCG
CGGATGGCTCCCATCTGGTGGCCAACGTCTCCGACGAGGAGATGCAAGAA
CACTACGACAATTTTTTCGAGGACGTGTTCGTAGAGTGCGAGGACAAGTA
CGGGGAAATCGAGGAGATGAACGTGTGCGACAACCTAGGCGACCATCTGG
TCGGCAATGTGTACATCAAATTCCGTAACGAGGCTGATGCGGAAAAGGCG
GCAAACGATTTGAACAACCGGTGGTTCGGTGGTCGACCGGTGTACTCGGA
ACTATCGCCGGTGACCGACTTCCGCGAGGCTTGCTGTCGGCAGTACGAGA
TGGGCGAATGTACCCGCTCCGGCTTCTGCAACTTCATGCACTTGAAGCCC
ATCTCGCGTGAGCTGCGAAGGTACCTCTACTCCCGCCGCCGTCGTGCCCG
CTCCCGTTCCCGATCCCCTGGACGCCGTCGCGGCTCCCGCAGCAGGTCCC
GATCCCCGGGTCGAAGAGGAGGCGGCAGAGGCGACGGTGTCGGCGGAGGA
AACTACTTGAACAACGAGCGGGACAACATGCGTGGCAATGATCGCGGAAA
CGATCGCGATCGCCGCAAAGGTGGTGGCGGAGGAGGCGGTGGTGGTGGTG
GACGGTATGCAAGCTTT
BO11372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3582-PA | 795 | U2af38-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af38-RB | 1655 | CG3582-RB | 197..989 | 16..808 | 3965 | 100 | Plus |
| U2af38-RA | 1261 | CG3582-RA | 197..989 | 16..808 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 293625..294372 | 808..61 | 3740 | 100 | Minus |
| 2L | 23513712 | 2L | 294440..294485 | 61..16 | 230 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 15:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 4569..4606 | 532..495 | 118 | 78.9 | Minus |
BO11372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:06 Download gff for
BO11372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3582-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:21 Download gff for
BO11372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3582-PA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:13:38 Download gff for
BO11372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af38-RA | 197..997 | 16..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:14:55 Download gff for
BO11372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af38-RA | 197..997 | 16..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:55 Download gff for
BO11372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 293617..294372 | 61..816 | 99 | <- | Minus |
| 2L | 294441..294485 | 16..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:13:38 Download gff for
BO11372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 293617..294372 | 61..816 | 99 | <- | Minus |
| arm_2L | 294441..294485 | 16..60 | 100 | | Minus |
BO11372.complete Sequence
826 bp assembled on 2006-10-10
GenBank Submission: FJ632071
> BO11372.complete
GAAGTTATCAGTCGACATGGCCGAGTACTTGGCATCCATTTTTGGCACGG
AAAAGGACAAGGTGAACTGTTCGTTCTACTTCAAGATCGGCGCCTGCCGC
CACGGCGACCGGTGCTCTCGCATCCACAACAAACCCACTTTCTCGCAGAC
GGTGCTTCTCCAAAATCTATACGTGAACCCCCAAAACTCCGCCAAATCCG
CGGATGGCTCCCATCTGGTGGCCAACGTCTCCGACGAGGAGATGCAAGAA
CACTACGACAATTTTTTCGAGGACGTGTTCGTAGAGTGCGAGGACAAGTA
CGGGGAAATCGAGGAGATGAACGTGTGCGACAACCTAGGCGACCATCTGG
TCGGCAATGTGTACATCAAATTCCGTAACGAGGCTGATGCGGAAAAGGCG
GCAAACGATTTGAACAACCGGTGGTTCGGTGGTCGACCGGTGTACTCGGA
ACTATCGCCGGTGACCGACTTCCGCGAGGCTTGCTGTCGGCAGTACGAGA
TGGGCGAATGTACCCGCTCCGGCTTCTGCAACTTCATGCACTTGAAGCCC
ATCTCGCGTGAGCTGCGAAGGTACCTCTACTCCCGCCGCCGTCGTGCCCG
CTCCCGTTCCCGATCCCCTGGACGCCGTCGCGGCTCCCGCAGCAGGTCCC
GATCCCCGGGTCGAAGAGGAGGCGGCAGAGGCGACGGTGTCGGCGGAGGA
AACTACTTGAACAACGAGCGGGACAACATGCGTGGCAATGATCGCGGAAA
CGATCGCGATCGCCGCAAAGGTGGTGGCGGAGGAGGCGGTGGTGGTGGTG
GACGGTATGCAAGCTTTCTAGACCAT
BO11372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af38-RB | 795 | CG3582-PB | 1..792 | 17..808 | 3960 | 100 | Plus |
| U2af38-RA | 795 | CG3582-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af38-RB | 1655 | CG3582-RB | 197..989 | 16..808 | 3965 | 100 | Plus |
| U2af38-RA | 1261 | CG3582-RA | 197..989 | 16..808 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 293625..294372 | 808..61 | 3740 | 100 | Minus |
| 2L | 23513712 | 2L | 294440..294485 | 61..16 | 230 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 06:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 4569..4606 | 532..495 | 118 | 78.9 | Minus |
BO11372.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:32 Download gff for
BO11372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af38-RA | 1..795 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:14 Download gff for
BO11372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af38-RA | 195..995 | 16..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:16 Download gff for
BO11372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af38-RA | 198..989 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:32 Download gff for
BO11372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af38-RA | 195..995 | 16..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:19 Download gff for
BO11372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af38-RA | 198..989 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:19 Download gff for
BO11372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 293623..294372 | 61..810 | 99 | <- | Minus |
| 2L | 294441..294484 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:16 Download gff for
BO11372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 293623..294372 | 61..810 | 99 | <- | Minus |
| arm_2L | 294441..294484 | 17..60 | 100 | | Minus |
BO11372.pep Sequence
Translation from 16 to 826
> BO11372.pep
MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQN
LYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEE
MNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVT
DFREACCRQYEMGECTRSGFCNFMHLKPISRELRRYLYSRRRRARSRSRS
PGRRRGSRSRSRSPGRRGGGRGDGVGGGNYLNNERDNMRGNDRGNDRDRR
KGGGGGGGGGGGRYASFLDH
BO11372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af38-PB | 264 | CG3582-PB | 1..264 | 1..264 | 1439 | 100 | Plus |
| U2af38-PA | 264 | CG3582-PA | 1..264 | 1..264 | 1439 | 100 | Plus |
| CG3294-PA | 456 | CG3294-PA | 156..428 | 4..256 | 207 | 22.3 | Plus |
| CG3294-PB | 314 | CG3294-PB | 156..312 | 4..157 | 182 | 24.1 | Plus |
