Clone Sequence Records
BO11374.3prime Sequence
634 bp (632 high quality bases) assembled on 2006-04-19
> BO11374.3prime
ATGGTCTAGAAAGCTTGCTATTTCAGTGGAGCTTATAGTTCTGGCTAGGA
AATCTCTCACTTCTAGCGCCGCATGAGACTCGGCGTCCTCGCTGACTGAA
TCTGACAGCGGCTCTGCCCGGAATTTGGACACGTCCACCGAGTTGCCCCA
CTCAAGCATGTGTGGTTCGCTCAGTTCTTCCAGTAGATTGTGCAATACTG
CGGCTGCTGTGATGATGCACGAGGCCGTATGGAAGCTAATGTCCAAGGGT
TGGCTAAGGAAGCTCCAGCGGGACATGAGGCGATGCAGTGCGCAGTCACT
CAATTCCTGCAGGTGCTCGGCAACCTCGTTGAAGTCGTGCTCGTGCGGAG
CTGTCGGATCAGTATAGCGCTGCAAAAGCCAGGGACGCAGTGGATAATTC
TGGTACACCGGGGCCAAGACAAAGGCCGGAACTAGTCGGGAATTAATGCG
GAATTCAGGGATTGCGGTAAGAGTATTGGGTGCGTGGGAAAACATGGGTC
CCAGGGTGGCACGCAAGCCACATCCCAATTGCAGCTCCCGAAAGAGCATT
CGATCGTCGAGCAGATACTCCATGCGCAGTATCGAGTTCTTGGCCTCGCC
AGTGGATCGGATGGGAATGGAGCAGACGCCAAGG
BO11374.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32095-PA | 1290 | CG32095-RA | 672..1287 | 634..19 | 3055 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32095-RA | 1526 | CG32095-RA | 818..1433 | 634..19 | 3065 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11824300..11824915 | 19..634 | 3065 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:02:09 has no hits.
BO11374.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:09 Download gff for
BO11374.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-PA | 672..1290 | 15..634 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:25 Download gff for
BO11374.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-PA | 672..1290 | 15..634 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:08:27 Download gff for
BO11374.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-RA | 818..1437 | 14..634 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:13 Download gff for
BO11374.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-RA | 818..1437 | 14..634 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:13 Download gff for
BO11374.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11824296..11824915 | 14..634 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:08:27 Download gff for
BO11374.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11817396..11818015 | 14..634 | 99 | | Plus |
BO11374.5prime Sequence
763 bp (682 high quality bases) assembled on 2006-04-19
> BO11374.5prime
GAAGTTATCAGTCGACATGGCCCGCCTGATACGAATCCACTTGAAGCACG
TTGAAACTACTGTGCTCTTGCTCAGGCGGAGGACGCAGCAGAGGACCAGG
CGGCGGTTTAGGATGCTGCGCACGTTTTTTATGCGCCAGATGATGGAGAT
GCACTCGAACTACCTGCACACTTACGCCATGCTGCGCCTGAAGCATTCCC
AAGTCGTGGACACGGAATCGGAAACCAGCGATGTCGATGAAGAACCACAC
GACAAGATTGGCGTGCCCTGCACCTTTCCCAGCTTCGATTCCCATTTCTT
TGAGCATGTGATTCCCGAGCTGAGCGAGGAGGACTTTCTCAACACACTCC
ATGTGACACGGGGAACCTTTGAGACCTTGTGCAAGCAACTTTCTCCCACT
CTGCGGACGTCAGATGAACTGACTCAAAGAGAGCCAGCAATTTCTACCGA
AAAGTGTGTGGCTCTGGCTCTGAACTTCCTGGCCAGCGGCGAGCGGCTCT
CTTTGATTGCCGAGAGATTTTCTCTGCCCCGTCCAAGGACCATCAAGTGT
TTAAAGGTCTTTTGCAACGCCGTTATGTCCACTTTGGGGCGGGCGCTTCG
CCAATTGCCCCAGAATCCAGTGGACTGCAATAAGTGTGGCCAAGGGGTTC
CAGCGTGAAAGCAACATGCCCGCCGCACTCGTCGGCGTCCTTGGCGTCTG
CTCCATTCCCATCCGATCCCCTGGCGAGGCCAAGAACTCGATACTGCGCA
TGGAGTATCTGCT
BO11374.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32095-PA | 1290 | CG32095-RA | 1..616 | 17..632 | 3080 | 100 | Plus |
| CG32095-PA | 1290 | CG32095-RA | 616..746 | 633..763 | 630 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32095-RA | 1526 | CG32095-RA | 147..892 | 17..763 | 3695 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11824841..11825586 | 763..17 | 3670 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:01:39 has no hits.
BO11374.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:10 Download gff for
BO11374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-PA | 1..746 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:27 Download gff for
BO11374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-PA | 1..746 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:24:02 Download gff for
BO11374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-RA | 147..892 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:26:33 Download gff for
BO11374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-RA | 147..892 | 17..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:26:33 Download gff for
BO11374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11824841..11825586 | 17..763 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:24:02 Download gff for
BO11374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11817941..11818686 | 17..763 | 99 | | Minus |
BO11374.complete Sequence
1321 bp assembled on 2006-10-10
GenBank Submission: FJ632072
> BO11374.complete
GAAGTTATCAGTCGACATGGCCCGCCTGATACGAATCCACTTGAAGCACG
TTGAAACTACTGTGCTCTTGCTCAGGCGGAGGACGCAGCAGAGGACCAGG
CGGCGGTTTAGGATGCTGCGCACGTTTTTTATGCGCCAGATGATGGAGAT
GCACTCGAACTACCTGCACACTTACGCCATGCTGCGCCTGAAGCATTCCC
AAGTCGTGGACACGGAATCGGAAACCAGCGATGTCGATGAAGAACCACAC
GACAAGATTGGCGTGCCCTGCACCTTTCCCAGCTTCGATTCCCATTTCTT
TGAGCATGTGATTCCCGAGCTGAGCGAGGAGGACTTTCTCAACACACTCC
ATGTGACACGGGGAACCTTTGAGACCTTGTGCAAGCAACTTTCTCCCACT
CTGCGGACGTCAGATGAACTGACTCAAAGAGAGCCAGCAATTTCTACCGA
AAAGTGTGTGGCTCTGGCTCTGAACTTCCTGGCCAGCGGCGAGCGGCTCT
CTTTGATTGCCGAGAGATTTTCTCTGCCCCGTCCAAGGACCATCAAGTGT
TTAAAGGTCTTTTGCAACGCCGTTATGTCCACTTTGGGGCGGGCGCTTCG
CCAATTGCCCCAGAATCCAGTGGACTGCAATAGTGTGGCCAAGGGGTTCC
AGCGTGAAAGCAACATGCCCGCCGCACTCGTCGGCGTCCTTGGCGTCTGC
TCCATTCCCATCCGATCCACTGGCGAGGCCAAGAACTCGATACTGCGCAT
GGAGTATCTGCTCGACGATCGAATGCTCTTTCGGGAGCTGCAATTGGGAT
GTGGCTTGCGTGCCACCCTGGGACCCATGTTTTCCCACGCACCCAATACT
CTTACCGCAATCCCTGAATTCCGCATTAATTCCCGACTAGTTCCGGCCTT
TGTCTTGGCCCCGGTGTACCAGAATTATCCACTGCGTCCCTGGCTTTTGC
AGCGCTATACTGATCCGACAGCTCCGCACGAGCACGACTTCAACGAGGTT
GCCGAGCACCTGCAGGAATTGAGTGACTGCGCACTGCATCGCCTCATGTC
CCGCTGGAGCTTCCTTAGCCAACCCTTGGACATTAGCTTCCATACGGCCT
CGTGCATCATCACAGCAGCCGCAGTATTGCACAATCTACTGGAAGAACTG
AGCGAACCACACATGCTTGAGTGGGGCAACTCGGTGGACGTGTCCAAATT
CCGGGCAGAGCCGCTGTCAGATTCAGTCAGCGAGGACGCCGAGTCTCATG
CGGCGCTAGAAGTGAGAGATTTCCTAGCCAGAACTATAAGCTCCACTGAA
ATAGCAAGCTTTCTAGACCAT
BO11374.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32095-RA | 1290 | CG32095-PA | 1..1287 | 17..1303 | 6420 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32095-RA | 1526 | CG32095-RA | 147..1433 | 17..1303 | 6420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11824300..11825586 | 1303..17 | 6420 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:44:35 has no hits.
BO11374.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:31 Download gff for
BO11374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-RA | 1..1290 | 17..1307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:37 Download gff for
BO11374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-RA | 88..1378 | 17..1308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:38 Download gff for
BO11374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-RA | 147..1433 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:31 Download gff for
BO11374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-RA | 88..1378 | 17..1308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:48 Download gff for
BO11374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32095-RA | 147..1433 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:48 Download gff for
BO11374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11824298..11825586 | 17..1305 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:38 Download gff for
BO11374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11817398..11818686 | 17..1305 | 99 | | Minus |
BO11374.pep Sequence
Translation from 16 to 1321
> BO11374.pep
MARLIRIHLKHVETTVLLLRRRTQQRTRRRFRMLRTFFMRQMMEMHSNYL
HTYAMLRLKHSQVVDTESETSDVDEEPHDKIGVPCTFPSFDSHFFEHVIP
ELSEEDFLNTLHVTRGTFETLCKQLSPTLRTSDELTQREPAISTEKCVAL
ALNFLASGERLSLIAERFSLPRPRTIKCLKVFCNAVMSTLGRALRQLPQN
PVDCNSVAKGFQRESNMPAALVGVLGVCSIPIRSTGEAKNSILRMEYLLD
DRMLFRELQLGCGLRATLGPMFSHAPNTLTAIPEFRINSRLVPAFVLAPV
YQNYPLRPWLLQRYTDPTAPHEHDFNEVAEHLQELSDCALHRLMSRWSFL
SQPLDISFHTASCIITAAAVLHNLLEELSEPHMLEWGNSVDVSKFRAEPL
SDSVSEDAESHAALEVRDFLARTISSTEIASFLDH
BO11374.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32095-PA | 429 | CG32095-PA | 1..429 | 1..429 | 2219 | 100 | Plus |
