Clone BO11376 Report

Search the DGRC for BO11376

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:113
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptspirit-RA
Protein status:BO11376.pep: validated full length
Sequenced Size:1213

Clone Sequence Records

BO11376.5prime Sequence

719 bp (706 high quality bases) assembled on 2006-04-19

> BO11376.5prime
GAAGTTATCAGTCGACATGAGCATTCGGTCTACCCATTGCATACCCACTC
GTGTGTATCTGCACCTTCTGCTGGTGTCGCTACCACTTTTGGCAGTTCAC
GCCACGCCCGCCATAAGTCCGCAATCGTTGCGCGGCATCATCTTCCCCGT
CGAAACCTTCGATGAGTGCCAACTGGAGGACGTGGCGCGGACGAAGGGCA
CCTGCCGGCGCATGGAGGACTGTCCCAGTGCCCTGAACGGCTGGCTAGAG
CGGCGCGAATCGCCCAAGACCTGCTACTTTGTGAGGTTCGACCACTATGT
GTGCTGCGCCCCAGCTGTAGCTCCAATTGTCACCCGATCCAGCCAGCAGG
CCTGCAATGAACTGAACAAGGTGTCAAAGGTCAAAGAGATCGACGAGTTC
TTCGTGTCGGTGGTGGGCGGCATGCCCACCCGTCCGCGGGAGTTCCCCTT
CATGGCCGCATTGGGCTGGCGTTCGAACTTCGATCAGAGGATATACTATC
GATGCGGCGGCGCCCTTATCGCCAACAACTTTGTCCTGACCGCAGCCCAC
TGTGCCGATTTGGGCGGTGAGCCACCCAGTCAGGTGCGCCTCGGTGGCGA
CAATCTAACCCTGACCGAGGGCGAGGATATAAGCATTCGGCGCGTGATCA
TCCATCCGGATTACAGTGCCAGCACGGCATACAACGATATTGCGCTGCTT
GAGCTGGAGACGGCGGCCA

BO11376.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2056-PB 1182 CG2056-RB 1..703 17..719 3515 100 Plus
CG2056-PA 1182 CG2056-RA 1..703 17..719 3515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
spirit-RD 1595 CG2056-RD 175..877 17..719 3515 100 Plus
spirit-RC 1546 CG2056-RC 126..828 17..719 3515 100 Plus
spirit-RA 1575 CG2056-RA 155..857 17..719 3515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8572459..8572715 350..94 1285 100 Minus
X 23542271 X 8572091..8572308 567..350 1090 100 Minus
X 23542271 X 8571817..8571969 719..567 765 100 Minus
X 23542271 X 8572828..8572906 95..17 395 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:55:11 has no hits.

BO11376.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:13 Download gff for BO11376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2056-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:33 Download gff for BO11376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2056-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:50:02 Download gff for BO11376.5prime
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 152..856 10..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:29 Download gff for BO11376.5prime
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 152..856 10..718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:29 Download gff for BO11376.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8572459..8572713 96..350 100 <- Minus
X 8572828..8572909 10..95 95   Minus
X 8572091..8572307 351..567 100 <- Minus
X 8571818..8571968 568..718 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:50:02 Download gff for BO11376.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8465851..8466001 568..718 100 <- Minus
arm_X 8466124..8466340 351..567 100 <- Minus
arm_X 8466492..8466746 96..350 100 <- Minus
arm_X 8466861..8466942 10..95 95   Minus

BO11376.3prime Sequence

806 bp (678 high quality bases) assembled on 2006-04-19

> BO11376.3prime
ATGGTCTAGAAAGCTTGCGATCGTCGCCCGCAGATCGAATTCGGGACTGA
AACTGGTCATCTGGTTGGGTTGCGGTGCGTTCGTCACCTGCTGCGCCGGC
CACACAATGCCCTCGATCCAGTCGACGAAGCTGGACACCCTGGTGTACAC
CGATGGCGGTCCACTGGCGCATCCCTGTCCCAGCGATGTGATGCCCACCA
CATAGCCAAGCAGGCCGTCCTGCATGAGCAGCGGTCCGCCGGAATCGCCC
TGGCAGGTGTCCCGCTCGCCGGTTATATCGCCGGCGCACATCTGCGTGCC
CAGCACGCCCTGAGCCAGCTGATCCTTTTGGTAGTGGTGCTGGCACTCCT
CGTTGCTCACGCTTTTCAGCGGCACCTTTAGCAGCTGAGCGGAGGATAGA
CCGGCGAAGCTGGTCTGCCCATAACCAATGGCCGTGACCAGCGTGTTGGT
CACCTCCTTCTGCGTCCAAATGCAAGTGGGCTTCAGTTCCGGCTTGGCCG
CCGTCTCCAGCTCAAGCAGCGCAATATCGTTGTATGCCGTGCTGGCACTG
TAATCCGGATGGATGATCACGCGCCGAATGCTTATATCCTCGCCCTCGGT
CAGGGTTAGATTGTCGCCACCGAGGCGCACCTGACTGGGTGGCTCACCGC
CCAAATCGGCACAGTGGGCTGCGGTCAGGACAAAGTTGTTGGCGATAAGG
GCGCCGCCGCATCGATAGTATATCCTCTGATCGAAGTTCGAACGCCAGCC
CAATGCGGCCATGAAGGGGAACTCCCGCGGAACGGGTGGGCATGCCGCCC
ACCACC

BO11376.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2056-PB 1182 CG2056-RB 417..1179 781..19 3815 100 Minus
CG2056-PA 1182 CG2056-RA 417..1179 781..19 3815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
spirit-RD 1595 CG2056-RD 567..1353 806..19 3915 99.9 Minus
spirit-RC 1546 CG2056-RC 518..1304 806..19 3915 99.9 Minus
spirit-RA 1575 CG2056-RA 547..1333 806..19 3915 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8571341..8571969 19..647 3145 100 Plus
X 23542271 X 8572091..8572249 647..806 750 99.4 Plus
Blast to na_te.dros performed on 2015-02-12 04:21:34 has no hits.

BO11376.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:12 Download gff for BO11376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2056-PA 393..1182 16..806 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:31 Download gff for BO11376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2056-PA 393..1182 16..806 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:25:13 Download gff for BO11376.3prime
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 547..1340 10..806 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:34 Download gff for BO11376.3prime
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 547..1340 10..806 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:34 Download gff for BO11376.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8571333..8571968 10..646 99 <- Plus
X 8572091..8572249 647..806 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:25:13 Download gff for BO11376.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8466124..8466282 647..806 99   Plus
arm_X 8465366..8466001 10..646 99 <- Plus

BO11376.complete Sequence

1213 bp assembled on 2006-10-10

GenBank Submission: FJ632073

> BO11376.complete
GAAGTTATCAGTCGACATGAGCATTCGGTCTACCCATTGCATACCCACTC
GTGTGTATCTGCACCTTCTGCTGGTGTCGCTACCACTTTTGGCAGTTCAC
GCCACGCCCGCCATAAGTCCGCAATCGTTGCGCGGCATCATCTTCCCCGT
CGAAACCTTCGATGAGTGCCAACTGGAGGACGTGGCGCGGACGAAGGGCA
CCTGCCGGCGCATGGAGGACTGTCCCAGTGCCCTGAACGGCTGGCTAGAG
CGGCGCGAATCGCCCAAGACCTGCTACTTTGTGAGGTTCGACCACTATGT
GTGCTGCGCCCCAGCTGTAGCTCCAATTGTCACCCGATCCAGCCAGCAGG
CCTGCAATGAACTGAACAAGGTGTCAAAGGTCAAAGAGATCGACGAGTTC
TTCGTGTCGGTGGTGGGCGGCATGCCCACCCGTCCGCGGGAGTTCCCCTT
CATGGCCGCATTGGGCTGGCGTTCGAACTTCGATCAGAGGATATACTATC
GATGCGGCGGCGCCCTTATCGCCAACAACTTTGTCCTGACCGCAGCCCAC
TGTGCCGATTTGGGCGGTGAGCCACCCAGTCAGGTGCGCCTCGGTGGCGA
CAATCTAACCCTGACCGAGGGCGAGGATATAAGCATTCGGCGCGTGATCA
TCCATCCGGATTACAGTGCCAGCACGGCATACAACGATATTGCGCTGCTT
GAGCTGGAGACGGCGGCCAAGCCGGAACTGAAGCCCACTTGCATTTGGAC
GCAGAAGGAGGTGACCAACACGCTGGTCACGGCCATTGGTTATGGGCAGA
CCAGCTTCGCCGGTCTATCCTCCGCTCAGCTGCTAAAGGTGCCGCTGAAA
AGCGTGAGCAACGAGGAGTGCCAGCACCACTACCAAAAGGATCAGCTGGC
TCAGGGCGTGCTGGGCACGCAGATGTGCGCCGGCGATATAACCGGCGAGC
GGGACACCTGCCAGGGCGATTCCGGCGGACCGCTGCTCATGCAGGACGGC
CTGCTTGGCTATGTGGTGGGCATCACATCGCTGGGACAGGGATGCGCCAG
TGGACCGCCATCGGTGTACACCAGGGTGTCCAGCTTCGTCGACTGGATCG
AGGGCATTGTGTGGCCGGCGCAGCAGGTGACGAACGCACCGCAACCCAAC
CAGATGACCAGTTTCAGTCCCGAATTCGATCTGCGGGCGACGATCGCAAG
CTTTCTAGACCAT

BO11376.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
spirit-RD 1182 CG2056-PD 1..1179 17..1195 5895 100 Plus
spirit-RC 1182 CG2056-PC 1..1179 17..1195 5895 100 Plus
spirit-RA 1182 CG2056-PA 1..1179 17..1195 5895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
spirit-RD 1595 CG2056-RD 175..1353 17..1195 5895 100 Plus
spirit-RC 1546 CG2056-RC 126..1304 17..1195 5895 100 Plus
spirit-RA 1575 CG2056-RA 155..1333 17..1195 5895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8571341..8571969 1195..567 3145 100 Minus
X 23542271 X 8572459..8572715 350..94 1285 100 Minus
X 23542271 X 8572091..8572308 567..350 1090 100 Minus
X 23542271 X 8572828..8572906 95..17 395 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:06:09 has no hits.

BO11376.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:38 Download gff for BO11376.complete
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 1..1182 17..1198 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:41 Download gff for BO11376.complete
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 152..1340 10..1204 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:08 Download gff for BO11376.complete
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 155..1333 17..1197 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:39 Download gff for BO11376.complete
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 152..1340 10..1204 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:46 Download gff for BO11376.complete
Subject Subject Range Query Range Percent Splice Strand
spirit-RA 155..1333 17..1197 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:46 Download gff for BO11376.complete
Subject Subject Range Query Range Percent Splice Strand
X 8571338..8571968 568..1197 99 <- Minus
X 8572091..8572307 351..567 100 <- Minus
X 8572459..8572713 96..350 100 <- Minus
X 8572828..8572906 17..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:08 Download gff for BO11376.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8466124..8466340 351..567 100 <- Minus
arm_X 8465371..8466001 568..1197 99 <- Minus
arm_X 8466492..8466746 96..350 100 <- Minus
arm_X 8466861..8466939 17..95 100   Minus

BO11376.pep Sequence

Translation from 16 to 1213

> BO11376.pep
MSIRSTHCIPTRVYLHLLLVSLPLLAVHATPAISPQSLRGIIFPVETFDE
CQLEDVARTKGTCRRMEDCPSALNGWLERRESPKTCYFVRFDHYVCCAPA
VAPIVTRSSQQACNELNKVSKVKEIDEFFVSVVGGMPTRPREFPFMAALG
WRSNFDQRIYYRCGGALIANNFVLTAAHCADLGGEPPSQVRLGGDNLTLT
EGEDISIRRVIIHPDYSASTAYNDIALLELETAAKPELKPTCIWTQKEVT
NTLVTAIGYGQTSFAGLSSAQLLKVPLKSVSNEECQHHYQKDQLAQGVLG
TQMCAGDITGERDTCQGDSGGPLLMQDGLLGYVVGITSLGQGCASGPPSV
YTRVSSFVDWIEGIVWPAQQVTNAPQPNQMTSFSPEFDLRATIASFLDH

BO11376.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
spirit-PD 393 CG2056-PD 1..393 1..393 2080 100 Plus
spirit-PC 393 CG2056-PC 1..393 1..393 2080 100 Plus
spirit-PA 393 CG2056-PA 1..393 1..393 2080 100 Plus
spirit-PB 393 CG2056-PB 1..393 1..393 2080 100 Plus
CG11668-PA 398 CG11668-PA 9..398 12..367 572 35.8 Plus