Clone Sequence Records
BO11376.5prime Sequence
719 bp (706 high quality bases) assembled on 2006-04-19
> BO11376.5prime
GAAGTTATCAGTCGACATGAGCATTCGGTCTACCCATTGCATACCCACTC
GTGTGTATCTGCACCTTCTGCTGGTGTCGCTACCACTTTTGGCAGTTCAC
GCCACGCCCGCCATAAGTCCGCAATCGTTGCGCGGCATCATCTTCCCCGT
CGAAACCTTCGATGAGTGCCAACTGGAGGACGTGGCGCGGACGAAGGGCA
CCTGCCGGCGCATGGAGGACTGTCCCAGTGCCCTGAACGGCTGGCTAGAG
CGGCGCGAATCGCCCAAGACCTGCTACTTTGTGAGGTTCGACCACTATGT
GTGCTGCGCCCCAGCTGTAGCTCCAATTGTCACCCGATCCAGCCAGCAGG
CCTGCAATGAACTGAACAAGGTGTCAAAGGTCAAAGAGATCGACGAGTTC
TTCGTGTCGGTGGTGGGCGGCATGCCCACCCGTCCGCGGGAGTTCCCCTT
CATGGCCGCATTGGGCTGGCGTTCGAACTTCGATCAGAGGATATACTATC
GATGCGGCGGCGCCCTTATCGCCAACAACTTTGTCCTGACCGCAGCCCAC
TGTGCCGATTTGGGCGGTGAGCCACCCAGTCAGGTGCGCCTCGGTGGCGA
CAATCTAACCCTGACCGAGGGCGAGGATATAAGCATTCGGCGCGTGATCA
TCCATCCGGATTACAGTGCCAGCACGGCATACAACGATATTGCGCTGCTT
GAGCTGGAGACGGCGGCCA
BO11376.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2056-PB | 1182 | CG2056-RB | 1..703 | 17..719 | 3515 | 100 | Plus |
CG2056-PA | 1182 | CG2056-RA | 1..703 | 17..719 | 3515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spirit-RD | 1595 | CG2056-RD | 175..877 | 17..719 | 3515 | 100 | Plus |
spirit-RC | 1546 | CG2056-RC | 126..828 | 17..719 | 3515 | 100 | Plus |
spirit-RA | 1575 | CG2056-RA | 155..857 | 17..719 | 3515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8572459..8572715 | 350..94 | 1285 | 100 | Minus |
X | 23542271 | X | 8572091..8572308 | 567..350 | 1090 | 100 | Minus |
X | 23542271 | X | 8571817..8571969 | 719..567 | 765 | 100 | Minus |
X | 23542271 | X | 8572828..8572906 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:55:11 has no hits.
BO11376.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:13 Download gff for
BO11376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2056-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:33 Download gff for
BO11376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2056-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:50:02 Download gff for
BO11376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 152..856 | 10..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:08:29 Download gff for
BO11376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 152..856 | 10..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:08:29 Download gff for
BO11376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8572459..8572713 | 96..350 | 100 | <- | Minus |
X | 8572828..8572909 | 10..95 | 95 | | Minus |
X | 8572091..8572307 | 351..567 | 100 | <- | Minus |
X | 8571818..8571968 | 568..718 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:50:02 Download gff for
BO11376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8465851..8466001 | 568..718 | 100 | <- | Minus |
arm_X | 8466124..8466340 | 351..567 | 100 | <- | Minus |
arm_X | 8466492..8466746 | 96..350 | 100 | <- | Minus |
arm_X | 8466861..8466942 | 10..95 | 95 | | Minus |
BO11376.3prime Sequence
806 bp (678 high quality bases) assembled on 2006-04-19
> BO11376.3prime
ATGGTCTAGAAAGCTTGCGATCGTCGCCCGCAGATCGAATTCGGGACTGA
AACTGGTCATCTGGTTGGGTTGCGGTGCGTTCGTCACCTGCTGCGCCGGC
CACACAATGCCCTCGATCCAGTCGACGAAGCTGGACACCCTGGTGTACAC
CGATGGCGGTCCACTGGCGCATCCCTGTCCCAGCGATGTGATGCCCACCA
CATAGCCAAGCAGGCCGTCCTGCATGAGCAGCGGTCCGCCGGAATCGCCC
TGGCAGGTGTCCCGCTCGCCGGTTATATCGCCGGCGCACATCTGCGTGCC
CAGCACGCCCTGAGCCAGCTGATCCTTTTGGTAGTGGTGCTGGCACTCCT
CGTTGCTCACGCTTTTCAGCGGCACCTTTAGCAGCTGAGCGGAGGATAGA
CCGGCGAAGCTGGTCTGCCCATAACCAATGGCCGTGACCAGCGTGTTGGT
CACCTCCTTCTGCGTCCAAATGCAAGTGGGCTTCAGTTCCGGCTTGGCCG
CCGTCTCCAGCTCAAGCAGCGCAATATCGTTGTATGCCGTGCTGGCACTG
TAATCCGGATGGATGATCACGCGCCGAATGCTTATATCCTCGCCCTCGGT
CAGGGTTAGATTGTCGCCACCGAGGCGCACCTGACTGGGTGGCTCACCGC
CCAAATCGGCACAGTGGGCTGCGGTCAGGACAAAGTTGTTGGCGATAAGG
GCGCCGCCGCATCGATAGTATATCCTCTGATCGAAGTTCGAACGCCAGCC
CAATGCGGCCATGAAGGGGAACTCCCGCGGAACGGGTGGGCATGCCGCCC
ACCACC
BO11376.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2056-PB | 1182 | CG2056-RB | 417..1179 | 781..19 | 3815 | 100 | Minus |
CG2056-PA | 1182 | CG2056-RA | 417..1179 | 781..19 | 3815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spirit-RD | 1595 | CG2056-RD | 567..1353 | 806..19 | 3915 | 99.9 | Minus |
spirit-RC | 1546 | CG2056-RC | 518..1304 | 806..19 | 3915 | 99.9 | Minus |
spirit-RA | 1575 | CG2056-RA | 547..1333 | 806..19 | 3915 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8571341..8571969 | 19..647 | 3145 | 100 | Plus |
X | 23542271 | X | 8572091..8572249 | 647..806 | 750 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:21:34 has no hits.
BO11376.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:12 Download gff for
BO11376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2056-PA | 393..1182 | 16..806 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:28:31 Download gff for
BO11376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2056-PA | 393..1182 | 16..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:25:13 Download gff for
BO11376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 547..1340 | 10..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:34 Download gff for
BO11376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 547..1340 | 10..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:34 Download gff for
BO11376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8571333..8571968 | 10..646 | 99 | <- | Plus |
X | 8572091..8572249 | 647..806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:25:13 Download gff for
BO11376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8466124..8466282 | 647..806 | 99 | | Plus |
arm_X | 8465366..8466001 | 10..646 | 99 | <- | Plus |
BO11376.complete Sequence
1213 bp assembled on 2006-10-10
GenBank Submission: FJ632073
> BO11376.complete
GAAGTTATCAGTCGACATGAGCATTCGGTCTACCCATTGCATACCCACTC
GTGTGTATCTGCACCTTCTGCTGGTGTCGCTACCACTTTTGGCAGTTCAC
GCCACGCCCGCCATAAGTCCGCAATCGTTGCGCGGCATCATCTTCCCCGT
CGAAACCTTCGATGAGTGCCAACTGGAGGACGTGGCGCGGACGAAGGGCA
CCTGCCGGCGCATGGAGGACTGTCCCAGTGCCCTGAACGGCTGGCTAGAG
CGGCGCGAATCGCCCAAGACCTGCTACTTTGTGAGGTTCGACCACTATGT
GTGCTGCGCCCCAGCTGTAGCTCCAATTGTCACCCGATCCAGCCAGCAGG
CCTGCAATGAACTGAACAAGGTGTCAAAGGTCAAAGAGATCGACGAGTTC
TTCGTGTCGGTGGTGGGCGGCATGCCCACCCGTCCGCGGGAGTTCCCCTT
CATGGCCGCATTGGGCTGGCGTTCGAACTTCGATCAGAGGATATACTATC
GATGCGGCGGCGCCCTTATCGCCAACAACTTTGTCCTGACCGCAGCCCAC
TGTGCCGATTTGGGCGGTGAGCCACCCAGTCAGGTGCGCCTCGGTGGCGA
CAATCTAACCCTGACCGAGGGCGAGGATATAAGCATTCGGCGCGTGATCA
TCCATCCGGATTACAGTGCCAGCACGGCATACAACGATATTGCGCTGCTT
GAGCTGGAGACGGCGGCCAAGCCGGAACTGAAGCCCACTTGCATTTGGAC
GCAGAAGGAGGTGACCAACACGCTGGTCACGGCCATTGGTTATGGGCAGA
CCAGCTTCGCCGGTCTATCCTCCGCTCAGCTGCTAAAGGTGCCGCTGAAA
AGCGTGAGCAACGAGGAGTGCCAGCACCACTACCAAAAGGATCAGCTGGC
TCAGGGCGTGCTGGGCACGCAGATGTGCGCCGGCGATATAACCGGCGAGC
GGGACACCTGCCAGGGCGATTCCGGCGGACCGCTGCTCATGCAGGACGGC
CTGCTTGGCTATGTGGTGGGCATCACATCGCTGGGACAGGGATGCGCCAG
TGGACCGCCATCGGTGTACACCAGGGTGTCCAGCTTCGTCGACTGGATCG
AGGGCATTGTGTGGCCGGCGCAGCAGGTGACGAACGCACCGCAACCCAAC
CAGATGACCAGTTTCAGTCCCGAATTCGATCTGCGGGCGACGATCGCAAG
CTTTCTAGACCAT
BO11376.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spirit-RD | 1182 | CG2056-PD | 1..1179 | 17..1195 | 5895 | 100 | Plus |
spirit-RC | 1182 | CG2056-PC | 1..1179 | 17..1195 | 5895 | 100 | Plus |
spirit-RA | 1182 | CG2056-PA | 1..1179 | 17..1195 | 5895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spirit-RD | 1595 | CG2056-RD | 175..1353 | 17..1195 | 5895 | 100 | Plus |
spirit-RC | 1546 | CG2056-RC | 126..1304 | 17..1195 | 5895 | 100 | Plus |
spirit-RA | 1575 | CG2056-RA | 155..1333 | 17..1195 | 5895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8571341..8571969 | 1195..567 | 3145 | 100 | Minus |
X | 23542271 | X | 8572459..8572715 | 350..94 | 1285 | 100 | Minus |
X | 23542271 | X | 8572091..8572308 | 567..350 | 1090 | 100 | Minus |
X | 23542271 | X | 8572828..8572906 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:06:09 has no hits.
BO11376.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:38 Download gff for
BO11376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 1..1182 | 17..1198 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:57:41 Download gff for
BO11376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 152..1340 | 10..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:08 Download gff for
BO11376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 155..1333 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:39 Download gff for
BO11376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 152..1340 | 10..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:46 Download gff for
BO11376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spirit-RA | 155..1333 | 17..1197 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:46 Download gff for
BO11376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8571338..8571968 | 568..1197 | 99 | <- | Minus |
X | 8572091..8572307 | 351..567 | 100 | <- | Minus |
X | 8572459..8572713 | 96..350 | 100 | <- | Minus |
X | 8572828..8572906 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:08 Download gff for
BO11376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8466124..8466340 | 351..567 | 100 | <- | Minus |
arm_X | 8465371..8466001 | 568..1197 | 99 | <- | Minus |
arm_X | 8466492..8466746 | 96..350 | 100 | <- | Minus |
arm_X | 8466861..8466939 | 17..95 | 100 | | Minus |
BO11376.pep Sequence
Translation from 16 to 1213
> BO11376.pep
MSIRSTHCIPTRVYLHLLLVSLPLLAVHATPAISPQSLRGIIFPVETFDE
CQLEDVARTKGTCRRMEDCPSALNGWLERRESPKTCYFVRFDHYVCCAPA
VAPIVTRSSQQACNELNKVSKVKEIDEFFVSVVGGMPTRPREFPFMAALG
WRSNFDQRIYYRCGGALIANNFVLTAAHCADLGGEPPSQVRLGGDNLTLT
EGEDISIRRVIIHPDYSASTAYNDIALLELETAAKPELKPTCIWTQKEVT
NTLVTAIGYGQTSFAGLSSAQLLKVPLKSVSNEECQHHYQKDQLAQGVLG
TQMCAGDITGERDTCQGDSGGPLLMQDGLLGYVVGITSLGQGCASGPPSV
YTRVSSFVDWIEGIVWPAQQVTNAPQPNQMTSFSPEFDLRATIASFLDH
BO11376.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spirit-PD | 393 | CG2056-PD | 1..393 | 1..393 | 2080 | 100 | Plus |
spirit-PC | 393 | CG2056-PC | 1..393 | 1..393 | 2080 | 100 | Plus |
spirit-PA | 393 | CG2056-PA | 1..393 | 1..393 | 2080 | 100 | Plus |
spirit-PB | 393 | CG2056-PB | 1..393 | 1..393 | 2080 | 100 | Plus |
CG11668-PA | 398 | CG11668-PA | 9..398 | 12..367 | 572 | 35.8 | Plus |