Clone BO11405 Report

Search the DGRC for BO11405

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:114
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptRanbp21-RA
Protein status:BO11405.pep:
Sequenced Size:3757

Clone Sequence Records

BO11405.3prime Sequence

907 bp (745 high quality bases) assembled on 2006-04-19

> BO11405.3prime
ATGGTCTAGAAAGCTTGCCTTCTCCGGCCCAAAGAGCCTGGCCAGACTCG
CGTTCTGATTGCTATCCATGATGTCAGCCGTGGTGCCCATGGATCCCTTG
GCCTTGTGCGACTGCATGGGCGGCAGATTGGCTATCTGCACCTCGTGCCG
GAACAACTGGTTCACGCTGCGTCCGACCAGCTGGGCGGTCAGCTTTTTGA
AGATGTCCTTCTTGGCGCGATCCACTTTGTTGCCCTTGACGGGCGCCACG
GCAATCTTTTCGTCGAACTTTTGAATGTCGGCCGCATTCACGCTGGGGAT
ATGCTGCAGCACTTCGCTGAGAATGGGGAACTGCGGACGGAGCAGCTCGT
AGAACTGCACGCCCAGCGTCACCAGGCCCGATTGGTTGGCCTCGTGCTGA
CCGTGCACCTGCATGCCCTGCAGGACGGCGGTAAAGGCCGTGACGGCCTT
GTTCTCGTCCATTAGTTTCTCGGCGGCCAGGAAACGCATCACGGGCGCTG
CGATGTTGACAGCCTTCATGCTGCACATGCCGTCGTTCCAGGCGATGGCT
TTTAGCAAGGTCATGAGCACATAATTGCCAATGAGTCCGTTGCGCAGCAG
CTTGCCGCCCAAGTCGCTTATGATGTCCGAGAGCAGTGCCGACTGGATTG
CTCGCGATTGCGGTGCGCTGTCCATCGAGTGCTCCTCATTCTCCATGGCC
ACAGAATTGCTGTTGGCATTGGCGCCAGCTGCCACATGATCGGCTCCAAT
TTGGCCGCCCACCAGCGCGATCTTTAGCACGTCCAAATACTCGCGCGTCA
GCGTGCGATTGAGCTGATCCTCCAGCACCTCCTGCGTATCGTTTACCTCG
CCGTCCAACTGGCCGCTTTCGTAGAGCGAGGCGATGTAAATCCAGCGGCC
GCGTGAG

BO11405.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12234-PA 3726 Ranbp21-RA 2843..3723 899..19 4355 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp21-RB 5879 CG12234-RB 3720..4607 907..19 4390 99.7 Minus
Ranbp21-RA 5190 CG12234-RA 3314..4201 907..19 4390 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19647578..19648458 19..899 4375 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 12:21:08 has no hits.

BO11405.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:43 Download gff for BO11405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12234-PA 2836..3726 16..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:10 Download gff for BO11405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12234-PA 2836..3726 16..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:26:37 Download gff for BO11405.3prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 3241..4128 19..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:32:50 Download gff for BO11405.3prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 3314..4201 19..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:32:50 Download gff for BO11405.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19647578..19648465 19..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:26:37 Download gff for BO11405.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19541611..19542498 19..907 99   Plus

BO11405.5prime Sequence

796 bp (731 high quality bases) assembled on 2006-04-19

> BO11405.5prime
GAAGTTATCAGTCGACATGTCCCAGCACGGAGGCACCGAGGCTCTGGCCG
CCGAACTGGCCTCGGCCATCGATCTAGTCATGAACCCGATGACACAGCAA
CAGGCGCGCCTGGAGGCCTACATGGCCTGTGAGCGGTTTAAGGAGGAGTC
GCCAATGTGCGCCCAGGTGGGCCTATTCCTGGCCAGCTCGCCGCAGTCTA
ACCAGCAAGTGCGACACTTTGGCCTGCAGCTGATCGAGTACACAATCAAG
TACCGATGGAATTGCATTACGCACGAGGAGAAGGTGTACATTAAGGACAA
TGCCATCAAGATGCTGAACGTGGGCGTGGGCCCGGCGGAGGACCGCTCGC
TGCTGCCCACGAAGGACGCGCTGTCGCGCATCATCGTCGAGATGATCAAG
CGCGAGTGGCCGCAGCAGTGGTCCGACCTGCTGCCGGAGCTAAGCCAGGC
CTGCACCAAGGGCGAGGCCCAAACGGAGCTGGTGCTTCTGGTCTTCTTGC
GACTGGTGGAGGACGTGGCCCTATTACAGACAATCGAGTCGAATCAGCGG
CGAAAGGACATGTACCAGGCGCTAAACAACAACATGAACGACATCTTCGA
GTTCTTCCTGCGCCTGGTGGAGCAGCATGTGACTGCGTTCCGCGAGACAA
CGCGTCTGTGCAACTACACCAAGGCGAACGCGCACAGCCGTGTCGTCGAG
ATGGTACTGCTCACGCTGAGCGGCTTCGTCGAGTGGGTCAGCATCCAGCA
CATCATGTCCAGCAATGGCAAACTGATGCACTTCCTCTGCATCCTG

BO11405.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12234-PA 3726 Ranbp21-RA 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp21-RB 5879 CG12234-RB 885..1664 17..796 3900 100 Plus
Ranbp21-RA 5190 CG12234-RA 479..1258 17..796 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19650521..19651300 796..17 3900 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:48:41 has no hits.

BO11405.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:44 Download gff for BO11405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12234-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:11 Download gff for BO11405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12234-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:01:13 Download gff for BO11405.5prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 402..1185 10..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:03 Download gff for BO11405.5prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 475..1258 10..796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:03 Download gff for BO11405.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19650521..19651304 10..796 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:01:13 Download gff for BO11405.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19544554..19545337 10..796 99   Minus

BO11405.complete Sequence

3757 bp assembled on 2008-01-17

GenBank Submission: FJ632076

> BO11405.complete
GAAGTTATCAGTCGACATGTCCCAGCACGGAGGCACCGAGGCTCTGGCCG
CCGAACTGGCCTCGGCCATCGATCTAGTCATGAACCCGATGACACAGCAA
CAGGCGCGCCTGGAGGCCTACATGGCCTGTGAGCGGTTTAAGGAGGAGTC
GCCAATGTGCGCCCAGGTGGGCCTATTCCTGGCCAGCTCGCCGCAGTCTA
ACCAGCAAGTGCGACACTTTGGCCTGCAGCTGATCGAGTACACAATCAAG
TACCGATGGAATTGCATTACGCACGAGGAGAAGGTGTACATTAAGGACAA
TGCCATCAAGATGCTGAACGTGGGCGTGGGCCCGGCGGAGGACCGCTCGC
TGCTGCCCACGAAGGACGCGCTGTCGCGCATCATCGTCGAGATGATCAAG
CGCGAGTGGCCGCAGCAGTGGTCCGACCTGCTGCCGGAGCTAAGCCAGGC
CTGCACCAAGGGCGAGGCCCAAACGGAGCTGGTGCTTCTGGTCTTCTTGC
GACTGGTGGAGGACGTGGCCCTATTACAGACAATCGAGTCGAATCAGCGG
CGAAAGGACATGTACCAGGCGCTAAACAACAACATGAACGACATCTTCGA
GTTCTTCCTGCGCCTGGTGGAGCAGCATGTGACTGCGTTCCGCGAGACAA
CGCGTCTGTGCAACTACACCAAGGCGAACGCGCACAGCCGTGTCGTCGAG
ATGGTACTGCTCACGCTGAGCGGCTTCGTCGAGTGGGTCAGCATCCAGCA
CATCATGTCCAGCAATGGCAAACTGATGCACTTCCTCTGCATCCTGCTCA
ACGACAAAGCATTCCAATGCAATGCGGCCGAGTGCCTGGCGCAGATCACG
AACCGCAAGGGCCAGACCAAGGAGCGAAAGCCGTTGCTTCAGCTGTTCAA
CGAGGAGCCGCTGCGCTACATCTACCAGGCCAGTCAGATACCGGCCGACA
CAAGTTCCACACTGGCCGTCGAGCAGCACCTCAACTTCCTTAAGAAGTTG
CTGCAAGTGCTGAACGGCATGGCGCAGCAACTGGTGGCGCTTTGGGGCAA
GGACGACGCCACGCAACGACCAGTGCACCTGGAAGTCCTTCTCGAATGCC
TATTGCTGCTCGTCCAGCATCCATCGCTGGGCCTCTCGCATGGGTCGGCG
CTCATTTGGCAGCTGCTGCTTAAGCATGAGCCCTCCTCCAAAGACTTCGC
CATGGTCAACTACATTCCCAAGCTCATCCACACGATTGCGCCCAGGATCG
TGAAGCTGCCATATCCTGCCTCCGCTAGCTCGCCTGCCAGCCTCTCCACG
GAGGCATATATTCGACTAGAACACGATAGTGAAGAGGAGTACGCGCTCTA
CTTTTTCCGCTGCCGGACCGACTTCCTTGAGATTTTCCGCCTGGCCACCC
TGGTGCAGCCGTTGGTCACGTATGGCTACTGCGAACAGTGGCTGCAGCAA
CGACTGCGAAACGCGCAGATTGAAGCGGACGCGGAGGTCAAGAGCGGCAA
CGTGTCGTGCAGCGTTCTGGATCCAGTATACCTGGAATGGGATGCGCTGG
TCAGTGTGTTGGACGGCGTGCTAAGCCGCATTCTCCTCGTGGCGGAACGC
CCATCTGTGCCGGCAGGACTGCGACTCTTGGAAGAATGCCTCAAACTGGA
GACAATCAATCCGCTGACATACTCGATTCTGCTGTCCTGCATTTCGGCCC
TGTTCGTCTTTCTGAGCATGTCCGCCTGTCAGATTACGGCGACCAACTGC
GTGGCCATGAGCGGAGTAAGTCTGTTGCCGCGAGTGCTTGACAAGATCTT
CCGAGCACTGGTGATGAAGCCCCCCAACGAACTGGAAAAGGTGCAGGCCA
AGTCCGCCAAGAATCTTCGACGACACGCCGCCTCGCTGCTGGTGAAGCTG
GCCCACAAGTATCCGCTGCTGCTGCTTCCCGTTTTCGAGCAGATCAACGG
CCACGTGGAGCTGTTGCTCAAGGAGCCCGGTAAGCATCAGCTGTGCCGTT
TGATGCGCACCACGTTGCAGGAGGCACTCATCCTAATCTCGAACCATTTC
TGCGACTTCGAGCGGCAGACGCTGTTCATTGAGCACATCGTGCAGGATAA
GCGCACCGAGTGGCTGGCCTTTGGCGATGCCCTCAAATCCCCGTTGGACT
TCATGAGCTTCGTTGGCCTGGACAAGCCTCCCATTTTCGCCGTGGAAGGA
GCTGTCACGCTCCAGAACCGATCACGCCTCTTGGATGCCCTGCACGTCGT
CCTCGGCGTGGTCAAGCGCTGCACTTGGCCAGACGATCCGGAGCGCGCAC
AGCGCGGAGGATTTGTCATTGGCTGCACGGAGCTGGGCAACCCGATCTGC
AGAAACCCGGCCACCAAGCACATTGTACCACTGCTGTCGCACGTGCTGAG
CTTGATGCGTGTGCTTAATGAGCTGTTTGCTCCGGAGGCTCTGCAAGCGC
TCTCCGAGGGTTATCGTGGAATCCATGGGATGATGGAGCACGAGAAGAAG
CTTCTAATGGGCATATGCGCTCTGCCCACCGACCCCTTGGACACGACCAT
CCGCAGCGAACCGACGGCCTTCGAAAAGATGCAGACCTTCATGATGATGG
TCACCGAGGGTTGCTACCACCTGATGGGCTCAGCTGGACCATCGCTGGGA
CGCGATCTTTACCAGCTCATGGGACTGTCGGACGCCATTGTGACGAATGT
GTTTAGCCGCATGGACTTGGTGCCCGATTACCGCCTGCGCCCAATCATAA
GGGTCTTCTTCAAGCCCTTCGTCTACTCGTGCCCGCCCAGCTTCTACGAC
AGCGTTCTGGTGCCGCTGTTTGCCCACTTGGCGCCATTGATGTGCGAACG
CCTCACGCGCCGCTGGATCTACATCGCCTCGCTCTACGAAAGCGGCCAGC
TGGACGGCGAGGTAAACGATACGCAGGAGGTGCTGGAGGATCAGCTCAAT
CGCACGCTGACGCGCGAGTATTTGGACGTGCTAAAGATCGCGCTGGTGGG
CGGCCAAATTGGAGCCGATCATGTGGCAGCTGGCGCCAATGCCAACAGCA
ATTCTGTGGCCATGGAGAATGAGGAGCACTCGATGGACAGCGCACCGCAA
TCGCGAGCAATCCAGTCGGCACTGCTCTCGGACATCATAAGCGACTTGGG
CGGCAAGCTGCTGCGCAACGGACTCATTGGCAATTATGTGCTCATGACCT
TGCTAAAAGCCATCGCCTGGAACGACGGCATGTGCAGCATGAAGGCTGTC
AACATCGCAGCGCCCGTGATGCGTTTCCTGGCCGCCGAGAAACTAATGGA
CGAGAACAAGGCCGTCACGGCCTTTACCGCCGTCCTGCAGGGCATGCAGG
TGCACGGTCAGCACGAGGCCAACCAATCGGGCCTGGTGACGCTGGGCGTG
CAGTTCTACGAGCTGCTCCGTCCGCAGTTCCCCATTCTCAGCGAAGTGCT
GCAGCATATCCCCAGCGTGAATGCGGCCGACATTCAAAAGTTCGACGAAA
AGATTGCCGTGGCGCCCGTCAAGGGCAACAAAGTGGATCGCGCCAAGAAG
GACATCTTCAAAAAGCTGACCGCCCAGCTGGTCGGACGCAGCGTGAACCA
GTTGTTCCGGCACGAGGTGCAGATAGCCAATCTGCCGCCCATGCAGTCGC
ACAAGGCCAAGGGATCCATGGGCACCACGGCTGACATCATGGATAGCAAT
CAGAACGCGAGTCTGGCCAGGCTCTTTGGGCCGGAGAAGGCAAGCTTTCT
AGACCAT

BO11405.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp21-RB 3726 CG12234-PB 1..3723 17..3739 18615 100 Plus
Ranbp21-RA 3726 CG12234-PA 1..3723 17..3739 18615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp21-RB 5879 CG12234-RB 885..4607 17..3739 18615 100 Plus
Ranbp21-RA 5190 CG12234-RA 479..4201 17..3739 18615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19647578..19651300 3739..17 18615 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:45:04 has no hits.

BO11405.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:25 Download gff for BO11405.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 1..3726 17..3742 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:34 Download gff for BO11405.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 541..4263 17..3741 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:47 Download gff for BO11405.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 406..4128 17..3741 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:25 Download gff for BO11405.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 537..4263 10..3739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:30 Download gff for BO11405.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp21-RA 479..4201 17..3741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:30 Download gff for BO11405.complete
Subject Subject Range Query Range Percent Splice Strand
X 19647574..19651300 17..3741 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:47 Download gff for BO11405.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19541607..19545333 17..3741 99   Minus

BO11405.pep Sequence

Translation from 16 to 3757

> BO11405.pep
MSQHGGTEALAAELASAIDLVMNPMTQQQARLEAYMACERFKEESPMCAQ
VGLFLASSPQSNQQVRHFGLQLIEYTIKYRWNCITHEEKVYIKDNAIKML
NVGVGPAEDRSLLPTKDALSRIIVEMIKREWPQQWSDLLPELSQACTKGE
AQTELVLLVFLRLVEDVALLQTIESNQRRKDMYQALNNNMNDIFEFFLRL
VEQHVTAFRETTRLCNYTKANAHSRVVEMVLLTLSGFVEWVSIQHIMSSN
GKLMHFLCILLNDKAFQCNAAECLAQITNRKGQTKERKPLLQLFNEEPLR
YIYQASQIPADTSSTLAVEQHLNFLKKLLQVLNGMAQQLVALWGKDDATQ
RPVHLEVLLECLLLLVQHPSLGLSHGSALIWQLLLKHEPSSKDFAMVNYI
PKLIHTIAPRIVKLPYPASASSPASLSTEAYIRLEHDSEEEYALYFFRCR
TDFLEIFRLATLVQPLVTYGYCEQWLQQRLRNAQIEADAEVKSGNVSCSV
LDPVYLEWDALVSVLDGVLSRILLVAERPSVPAGLRLLEECLKLETINPL
TYSILLSCISALFVFLSMSACQITATNCVAMSGVSLLPRVLDKIFRALVM
KPPNELEKVQAKSAKNLRRHAASLLVKLAHKYPLLLLPVFEQINGHVELL
LKEPGKHQLCRLMRTTLQEALILISNHFCDFERQTLFIEHIVQDKRTEWL
AFGDALKSPLDFMSFVGLDKPPIFAVEGAVTLQNRSRLLDALHVVLGVVK
RCTWPDDPERAQRGGFVIGCTELGNPICRNPATKHIVPLLSHVLSLMRVL
NELFAPEALQALSEGYRGIHGMMEHEKKLLMGICALPTDPLDTTIRSEPT
AFEKMQTFMMMVTEGCYHLMGSAGPSLGRDLYQLMGLSDAIVTNVFSRMD
LVPDYRLRPIIRVFFKPFVYSCPPSFYDSVLVPLFAHLAPLMCERLTRRW
IYIASLYESGQLDGEVNDTQEVLEDQLNRTLTREYLDVLKIALVGGQIGA
DHVAAGANANSNSVAMENEEHSMDSAPQSRAIQSALLSDIISDLGGKLLR
NGLIGNYVLMTLLKAIAWNDGMCSMKAVNIAAPVMRFLAAEKLMDENKAV
TAFTAVLQGMQVHGQHEANQSGLVTLGVQFYELLRPQFPILSEVLQHIPS
VNAADIQKFDEKIAVAPVKGNKVDRAKKDIFKKLTAQLVGRSVNQLFRHE
VQIANLPPMQSHKAKGSMGTTADIMDSNQNASLARLFGPEKASFLDH

BO11405.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp21-PB 1241 CG12234-PB 1..1241 1..1241 6354 100 Plus
Ranbp21-PA 1241 CG12234-PA 1..1241 1..1241 6354 100 Plus