Clone Sequence Records
BO11405.3prime Sequence
907 bp (745 high quality bases) assembled on 2006-04-19
> BO11405.3prime
ATGGTCTAGAAAGCTTGCCTTCTCCGGCCCAAAGAGCCTGGCCAGACTCG
CGTTCTGATTGCTATCCATGATGTCAGCCGTGGTGCCCATGGATCCCTTG
GCCTTGTGCGACTGCATGGGCGGCAGATTGGCTATCTGCACCTCGTGCCG
GAACAACTGGTTCACGCTGCGTCCGACCAGCTGGGCGGTCAGCTTTTTGA
AGATGTCCTTCTTGGCGCGATCCACTTTGTTGCCCTTGACGGGCGCCACG
GCAATCTTTTCGTCGAACTTTTGAATGTCGGCCGCATTCACGCTGGGGAT
ATGCTGCAGCACTTCGCTGAGAATGGGGAACTGCGGACGGAGCAGCTCGT
AGAACTGCACGCCCAGCGTCACCAGGCCCGATTGGTTGGCCTCGTGCTGA
CCGTGCACCTGCATGCCCTGCAGGACGGCGGTAAAGGCCGTGACGGCCTT
GTTCTCGTCCATTAGTTTCTCGGCGGCCAGGAAACGCATCACGGGCGCTG
CGATGTTGACAGCCTTCATGCTGCACATGCCGTCGTTCCAGGCGATGGCT
TTTAGCAAGGTCATGAGCACATAATTGCCAATGAGTCCGTTGCGCAGCAG
CTTGCCGCCCAAGTCGCTTATGATGTCCGAGAGCAGTGCCGACTGGATTG
CTCGCGATTGCGGTGCGCTGTCCATCGAGTGCTCCTCATTCTCCATGGCC
ACAGAATTGCTGTTGGCATTGGCGCCAGCTGCCACATGATCGGCTCCAAT
TTGGCCGCCCACCAGCGCGATCTTTAGCACGTCCAAATACTCGCGCGTCA
GCGTGCGATTGAGCTGATCCTCCAGCACCTCCTGCGTATCGTTTACCTCG
CCGTCCAACTGGCCGCTTTCGTAGAGCGAGGCGATGTAAATCCAGCGGCC
GCGTGAG
BO11405.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12234-PA | 3726 | Ranbp21-RA | 2843..3723 | 899..19 | 4355 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ranbp21-RB | 5879 | CG12234-RB | 3720..4607 | 907..19 | 4390 | 99.7 | Minus |
Ranbp21-RA | 5190 | CG12234-RA | 3314..4201 | 907..19 | 4390 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19647578..19648458 | 19..899 | 4375 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:21:08 has no hits.
BO11405.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:43 Download gff for
BO11405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12234-PA | 2836..3726 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:10 Download gff for
BO11405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12234-PA | 2836..3726 | 16..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:26:37 Download gff for
BO11405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp21-RA | 3241..4128 | 19..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:32:50 Download gff for
BO11405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp21-RA | 3314..4201 | 19..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:32:50 Download gff for
BO11405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19647578..19648465 | 19..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:26:37 Download gff for
BO11405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19541611..19542498 | 19..907 | 99 | | Plus |
BO11405.5prime Sequence
796 bp (731 high quality bases) assembled on 2006-04-19
> BO11405.5prime
GAAGTTATCAGTCGACATGTCCCAGCACGGAGGCACCGAGGCTCTGGCCG
CCGAACTGGCCTCGGCCATCGATCTAGTCATGAACCCGATGACACAGCAA
CAGGCGCGCCTGGAGGCCTACATGGCCTGTGAGCGGTTTAAGGAGGAGTC
GCCAATGTGCGCCCAGGTGGGCCTATTCCTGGCCAGCTCGCCGCAGTCTA
ACCAGCAAGTGCGACACTTTGGCCTGCAGCTGATCGAGTACACAATCAAG
TACCGATGGAATTGCATTACGCACGAGGAGAAGGTGTACATTAAGGACAA
TGCCATCAAGATGCTGAACGTGGGCGTGGGCCCGGCGGAGGACCGCTCGC
TGCTGCCCACGAAGGACGCGCTGTCGCGCATCATCGTCGAGATGATCAAG
CGCGAGTGGCCGCAGCAGTGGTCCGACCTGCTGCCGGAGCTAAGCCAGGC
CTGCACCAAGGGCGAGGCCCAAACGGAGCTGGTGCTTCTGGTCTTCTTGC
GACTGGTGGAGGACGTGGCCCTATTACAGACAATCGAGTCGAATCAGCGG
CGAAAGGACATGTACCAGGCGCTAAACAACAACATGAACGACATCTTCGA
GTTCTTCCTGCGCCTGGTGGAGCAGCATGTGACTGCGTTCCGCGAGACAA
CGCGTCTGTGCAACTACACCAAGGCGAACGCGCACAGCCGTGTCGTCGAG
ATGGTACTGCTCACGCTGAGCGGCTTCGTCGAGTGGGTCAGCATCCAGCA
CATCATGTCCAGCAATGGCAAACTGATGCACTTCCTCTGCATCCTG
BO11405.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12234-PA | 3726 | Ranbp21-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ranbp21-RB | 5879 | CG12234-RB | 885..1664 | 17..796 | 3900 | 100 | Plus |
Ranbp21-RA | 5190 | CG12234-RA | 479..1258 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19650521..19651300 | 796..17 | 3900 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:48:41 has no hits.
BO11405.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:44 Download gff for
BO11405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12234-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:11 Download gff for
BO11405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12234-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:01:13 Download gff for
BO11405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp21-RA | 402..1185 | 10..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:03 Download gff for
BO11405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp21-RA | 475..1258 | 10..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:03 Download gff for
BO11405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19650521..19651304 | 10..796 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:01:13 Download gff for
BO11405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19544554..19545337 | 10..796 | 99 | | Minus |
BO11405.complete Sequence
3757 bp assembled on 2008-01-17
GenBank Submission: FJ632076
> BO11405.complete
GAAGTTATCAGTCGACATGTCCCAGCACGGAGGCACCGAGGCTCTGGCCG
CCGAACTGGCCTCGGCCATCGATCTAGTCATGAACCCGATGACACAGCAA
CAGGCGCGCCTGGAGGCCTACATGGCCTGTGAGCGGTTTAAGGAGGAGTC
GCCAATGTGCGCCCAGGTGGGCCTATTCCTGGCCAGCTCGCCGCAGTCTA
ACCAGCAAGTGCGACACTTTGGCCTGCAGCTGATCGAGTACACAATCAAG
TACCGATGGAATTGCATTACGCACGAGGAGAAGGTGTACATTAAGGACAA
TGCCATCAAGATGCTGAACGTGGGCGTGGGCCCGGCGGAGGACCGCTCGC
TGCTGCCCACGAAGGACGCGCTGTCGCGCATCATCGTCGAGATGATCAAG
CGCGAGTGGCCGCAGCAGTGGTCCGACCTGCTGCCGGAGCTAAGCCAGGC
CTGCACCAAGGGCGAGGCCCAAACGGAGCTGGTGCTTCTGGTCTTCTTGC
GACTGGTGGAGGACGTGGCCCTATTACAGACAATCGAGTCGAATCAGCGG
CGAAAGGACATGTACCAGGCGCTAAACAACAACATGAACGACATCTTCGA
GTTCTTCCTGCGCCTGGTGGAGCAGCATGTGACTGCGTTCCGCGAGACAA
CGCGTCTGTGCAACTACACCAAGGCGAACGCGCACAGCCGTGTCGTCGAG
ATGGTACTGCTCACGCTGAGCGGCTTCGTCGAGTGGGTCAGCATCCAGCA
CATCATGTCCAGCAATGGCAAACTGATGCACTTCCTCTGCATCCTGCTCA
ACGACAAAGCATTCCAATGCAATGCGGCCGAGTGCCTGGCGCAGATCACG
AACCGCAAGGGCCAGACCAAGGAGCGAAAGCCGTTGCTTCAGCTGTTCAA
CGAGGAGCCGCTGCGCTACATCTACCAGGCCAGTCAGATACCGGCCGACA
CAAGTTCCACACTGGCCGTCGAGCAGCACCTCAACTTCCTTAAGAAGTTG
CTGCAAGTGCTGAACGGCATGGCGCAGCAACTGGTGGCGCTTTGGGGCAA
GGACGACGCCACGCAACGACCAGTGCACCTGGAAGTCCTTCTCGAATGCC
TATTGCTGCTCGTCCAGCATCCATCGCTGGGCCTCTCGCATGGGTCGGCG
CTCATTTGGCAGCTGCTGCTTAAGCATGAGCCCTCCTCCAAAGACTTCGC
CATGGTCAACTACATTCCCAAGCTCATCCACACGATTGCGCCCAGGATCG
TGAAGCTGCCATATCCTGCCTCCGCTAGCTCGCCTGCCAGCCTCTCCACG
GAGGCATATATTCGACTAGAACACGATAGTGAAGAGGAGTACGCGCTCTA
CTTTTTCCGCTGCCGGACCGACTTCCTTGAGATTTTCCGCCTGGCCACCC
TGGTGCAGCCGTTGGTCACGTATGGCTACTGCGAACAGTGGCTGCAGCAA
CGACTGCGAAACGCGCAGATTGAAGCGGACGCGGAGGTCAAGAGCGGCAA
CGTGTCGTGCAGCGTTCTGGATCCAGTATACCTGGAATGGGATGCGCTGG
TCAGTGTGTTGGACGGCGTGCTAAGCCGCATTCTCCTCGTGGCGGAACGC
CCATCTGTGCCGGCAGGACTGCGACTCTTGGAAGAATGCCTCAAACTGGA
GACAATCAATCCGCTGACATACTCGATTCTGCTGTCCTGCATTTCGGCCC
TGTTCGTCTTTCTGAGCATGTCCGCCTGTCAGATTACGGCGACCAACTGC
GTGGCCATGAGCGGAGTAAGTCTGTTGCCGCGAGTGCTTGACAAGATCTT
CCGAGCACTGGTGATGAAGCCCCCCAACGAACTGGAAAAGGTGCAGGCCA
AGTCCGCCAAGAATCTTCGACGACACGCCGCCTCGCTGCTGGTGAAGCTG
GCCCACAAGTATCCGCTGCTGCTGCTTCCCGTTTTCGAGCAGATCAACGG
CCACGTGGAGCTGTTGCTCAAGGAGCCCGGTAAGCATCAGCTGTGCCGTT
TGATGCGCACCACGTTGCAGGAGGCACTCATCCTAATCTCGAACCATTTC
TGCGACTTCGAGCGGCAGACGCTGTTCATTGAGCACATCGTGCAGGATAA
GCGCACCGAGTGGCTGGCCTTTGGCGATGCCCTCAAATCCCCGTTGGACT
TCATGAGCTTCGTTGGCCTGGACAAGCCTCCCATTTTCGCCGTGGAAGGA
GCTGTCACGCTCCAGAACCGATCACGCCTCTTGGATGCCCTGCACGTCGT
CCTCGGCGTGGTCAAGCGCTGCACTTGGCCAGACGATCCGGAGCGCGCAC
AGCGCGGAGGATTTGTCATTGGCTGCACGGAGCTGGGCAACCCGATCTGC
AGAAACCCGGCCACCAAGCACATTGTACCACTGCTGTCGCACGTGCTGAG
CTTGATGCGTGTGCTTAATGAGCTGTTTGCTCCGGAGGCTCTGCAAGCGC
TCTCCGAGGGTTATCGTGGAATCCATGGGATGATGGAGCACGAGAAGAAG
CTTCTAATGGGCATATGCGCTCTGCCCACCGACCCCTTGGACACGACCAT
CCGCAGCGAACCGACGGCCTTCGAAAAGATGCAGACCTTCATGATGATGG
TCACCGAGGGTTGCTACCACCTGATGGGCTCAGCTGGACCATCGCTGGGA
CGCGATCTTTACCAGCTCATGGGACTGTCGGACGCCATTGTGACGAATGT
GTTTAGCCGCATGGACTTGGTGCCCGATTACCGCCTGCGCCCAATCATAA
GGGTCTTCTTCAAGCCCTTCGTCTACTCGTGCCCGCCCAGCTTCTACGAC
AGCGTTCTGGTGCCGCTGTTTGCCCACTTGGCGCCATTGATGTGCGAACG
CCTCACGCGCCGCTGGATCTACATCGCCTCGCTCTACGAAAGCGGCCAGC
TGGACGGCGAGGTAAACGATACGCAGGAGGTGCTGGAGGATCAGCTCAAT
CGCACGCTGACGCGCGAGTATTTGGACGTGCTAAAGATCGCGCTGGTGGG
CGGCCAAATTGGAGCCGATCATGTGGCAGCTGGCGCCAATGCCAACAGCA
ATTCTGTGGCCATGGAGAATGAGGAGCACTCGATGGACAGCGCACCGCAA
TCGCGAGCAATCCAGTCGGCACTGCTCTCGGACATCATAAGCGACTTGGG
CGGCAAGCTGCTGCGCAACGGACTCATTGGCAATTATGTGCTCATGACCT
TGCTAAAAGCCATCGCCTGGAACGACGGCATGTGCAGCATGAAGGCTGTC
AACATCGCAGCGCCCGTGATGCGTTTCCTGGCCGCCGAGAAACTAATGGA
CGAGAACAAGGCCGTCACGGCCTTTACCGCCGTCCTGCAGGGCATGCAGG
TGCACGGTCAGCACGAGGCCAACCAATCGGGCCTGGTGACGCTGGGCGTG
CAGTTCTACGAGCTGCTCCGTCCGCAGTTCCCCATTCTCAGCGAAGTGCT
GCAGCATATCCCCAGCGTGAATGCGGCCGACATTCAAAAGTTCGACGAAA
AGATTGCCGTGGCGCCCGTCAAGGGCAACAAAGTGGATCGCGCCAAGAAG
GACATCTTCAAAAAGCTGACCGCCCAGCTGGTCGGACGCAGCGTGAACCA
GTTGTTCCGGCACGAGGTGCAGATAGCCAATCTGCCGCCCATGCAGTCGC
ACAAGGCCAAGGGATCCATGGGCACCACGGCTGACATCATGGATAGCAAT
CAGAACGCGAGTCTGGCCAGGCTCTTTGGGCCGGAGAAGGCAAGCTTTCT
AGACCAT
BO11405.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ranbp21-RB | 3726 | CG12234-PB | 1..3723 | 17..3739 | 18615 | 100 | Plus |
Ranbp21-RA | 3726 | CG12234-PA | 1..3723 | 17..3739 | 18615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ranbp21-RB | 5879 | CG12234-RB | 885..4607 | 17..3739 | 18615 | 100 | Plus |
Ranbp21-RA | 5190 | CG12234-RA | 479..4201 | 17..3739 | 18615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19647578..19651300 | 3739..17 | 18615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:45:04 has no hits.
BO11405.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:25 Download gff for
BO11405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp21-RA | 1..3726 | 17..3742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:34 Download gff for
BO11405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp21-RA | 541..4263 | 17..3741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:47 Download gff for
BO11405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp21-RA | 406..4128 | 17..3741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:25 Download gff for
BO11405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp21-RA | 537..4263 | 10..3739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:30 Download gff for
BO11405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ranbp21-RA | 479..4201 | 17..3741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:30 Download gff for
BO11405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19647574..19651300 | 17..3741 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:47 Download gff for
BO11405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19541607..19545333 | 17..3741 | 99 | | Minus |
BO11405.pep Sequence
Translation from 16 to 3757
> BO11405.pep
MSQHGGTEALAAELASAIDLVMNPMTQQQARLEAYMACERFKEESPMCAQ
VGLFLASSPQSNQQVRHFGLQLIEYTIKYRWNCITHEEKVYIKDNAIKML
NVGVGPAEDRSLLPTKDALSRIIVEMIKREWPQQWSDLLPELSQACTKGE
AQTELVLLVFLRLVEDVALLQTIESNQRRKDMYQALNNNMNDIFEFFLRL
VEQHVTAFRETTRLCNYTKANAHSRVVEMVLLTLSGFVEWVSIQHIMSSN
GKLMHFLCILLNDKAFQCNAAECLAQITNRKGQTKERKPLLQLFNEEPLR
YIYQASQIPADTSSTLAVEQHLNFLKKLLQVLNGMAQQLVALWGKDDATQ
RPVHLEVLLECLLLLVQHPSLGLSHGSALIWQLLLKHEPSSKDFAMVNYI
PKLIHTIAPRIVKLPYPASASSPASLSTEAYIRLEHDSEEEYALYFFRCR
TDFLEIFRLATLVQPLVTYGYCEQWLQQRLRNAQIEADAEVKSGNVSCSV
LDPVYLEWDALVSVLDGVLSRILLVAERPSVPAGLRLLEECLKLETINPL
TYSILLSCISALFVFLSMSACQITATNCVAMSGVSLLPRVLDKIFRALVM
KPPNELEKVQAKSAKNLRRHAASLLVKLAHKYPLLLLPVFEQINGHVELL
LKEPGKHQLCRLMRTTLQEALILISNHFCDFERQTLFIEHIVQDKRTEWL
AFGDALKSPLDFMSFVGLDKPPIFAVEGAVTLQNRSRLLDALHVVLGVVK
RCTWPDDPERAQRGGFVIGCTELGNPICRNPATKHIVPLLSHVLSLMRVL
NELFAPEALQALSEGYRGIHGMMEHEKKLLMGICALPTDPLDTTIRSEPT
AFEKMQTFMMMVTEGCYHLMGSAGPSLGRDLYQLMGLSDAIVTNVFSRMD
LVPDYRLRPIIRVFFKPFVYSCPPSFYDSVLVPLFAHLAPLMCERLTRRW
IYIASLYESGQLDGEVNDTQEVLEDQLNRTLTREYLDVLKIALVGGQIGA
DHVAAGANANSNSVAMENEEHSMDSAPQSRAIQSALLSDIISDLGGKLLR
NGLIGNYVLMTLLKAIAWNDGMCSMKAVNIAAPVMRFLAAEKLMDENKAV
TAFTAVLQGMQVHGQHEANQSGLVTLGVQFYELLRPQFPILSEVLQHIPS
VNAADIQKFDEKIAVAPVKGNKVDRAKKDIFKKLTAQLVGRSVNQLFRHE
VQIANLPPMQSHKAKGSMGTTADIMDSNQNASLARLFGPEKASFLDH
BO11405.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ranbp21-PB | 1241 | CG12234-PB | 1..1241 | 1..1241 | 6354 | 100 | Plus |
Ranbp21-PA | 1241 | CG12234-PA | 1..1241 | 1..1241 | 6354 | 100 | Plus |