Clone Sequence Records
BO11412.3prime Sequence
889 bp (806 high quality bases) assembled on 2006-04-19
> BO11412.3prime
ATGGTCTAGAAAGCTTGCGATGTCCCCAAAGAAGTAACCCAGAGCAGTGG
CTGCCCTCATCCGCACCAGCGCCTGTTCGTCCTTGAGCAGCACGGCAATC
TTGCTGGCCACAGTCTCCGTTTGGACGTTTCTCTCGCTGAGGAAGTTGTG
CAGAATGCCAATTACAATGGCTGCACTACCTCGCACCTCGGGCCACTGAC
TACGCAACTGCGGCAGGCACGAATCGATGAAGTCCTGGATGTGATCCGTC
AGCTCCAGTGCAATTGTCTTGACAAATTCCAGCACAAAGCTGCTGTAGTT
GAGCTGGTGACCTCGTTCCTCGCCCAACTGCTGCTCCGCCATCTCCACGA
CCCTTGGAGCTGTCAGGAGACGACAAACCCGCTGAAGTGTTCCACGACAG
GCCGAGGCAATAGCCACTTCGCTCTCGCTGAGATGCAGTAGCAGCGGGAA
GAGATTGGCGATGAGCTGCTCTCTCAGTGCCTCCATCGAGGATGTGGGTG
AACTGCTGCCGTCATCGTGCTTGCCCTCGCATATATCGCCAAACAGTTGG
ATAGCCGCCTCTCGCATCTCTAGTGCATAGTTGCCGAGAAACGGTCGAAT
CCGGATGGCGAGGGAGACGTGGAAGGGCTCTACCCGCTCGCTGGGCAATG
CTCGCAGTATTCCAGACAGGCCGCGCATGCTCTCCAGCGGAATGTTGATT
AGGCAATCGCCCACCGGATCGTCGACTCCCTTCAACAGAGCACCGATGGC
AGTTTCCGAGTAGCGCTTCGCCTCCTTTTCTCCCAACTGGCCCACGTAAC
CCATGCCCTGGATGCTGAGACCTCGCACTACCGCATTGGGATCGGATAGT
GCGGCTCCGAGGTGGAGCAGTATGGACGCAGCTAGCTCA
BO11412.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12132-PA | 5229 | c11.1-RA | 4356..5226 | 889..19 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c11.1-RB | 6204 | CG12132-RB | 4524..5394 | 889..19 | 4355 | 100 | Minus |
| c11.1-RA | 5874 | CG12132-RA | 4524..5394 | 889..19 | 4355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9276493..9277121 | 261..889 | 3145 | 100 | Plus |
| X | 23542271 | X | 9276128..9276268 | 19..159 | 705 | 100 | Plus |
| X | 23542271 | X | 9276328..9276431 | 158..261 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:20:52 has no hits.
BO11412.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:55 Download gff for
BO11412.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-PA | 4357..5229 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:26 Download gff for
BO11412.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12132-PA | 4357..5229 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:26:32 Download gff for
BO11412.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 4525..5400 | 13..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:32:08 Download gff for
BO11412.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 4525..5400 | 13..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:32:08 Download gff for
BO11412.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9276122..9276267 | 13..158 | 97 | <- | Plus |
| X | 9276329..9276431 | 159..261 | 100 | <- | Plus |
| X | 9276494..9277120 | 262..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:26:32 Download gff for
BO11412.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9170155..9170300 | 13..158 | 97 | <- | Plus |
| arm_X | 9170362..9170464 | 159..261 | 100 | <- | Plus |
| arm_X | 9170527..9171153 | 262..888 | 100 | | Plus |
BO11412.5prime Sequence
857 bp (680 high quality bases) assembled on 2006-04-19
> BO11412.5prime
GAAGTTATCAGTCGACATGGACGGCCGAGGGGTTGGCGGCGGTGGTAGTG
GTGCTGCCACAGGGGGAGGATCCGCCAACAACAAATCAGCTGCTGGAAAT
AGCGCCGCCACTGGAAATGCCGATGCATCTACCGCCACAGCGGCGCCCAA
TGATAAGCCAACGATTCTGGAAGGCGTTCTCCACAACATCTTCGATGGGC
TGATGGACAAGGAGGAGCAGGTGCGGATTGCCATGCAGCAGGCGATCGTG
AAGATCTTGGAGACCCATCCGGAACGGGCTGCGGAGATCCTCAGCGAACA
TCGATCGCAGCAGCCGAAGATGACCGATCAAACAGTGGCCATGTTGTTGG
ACTGCATTCGTCGCGTGGTGGGAGCGGAAACTCCTCTGCCGCCGGCTGCA
AATCAGAAACTTATTGATCTTGCGCTGCAGGAGCTCACCAAGAATCCCGA
GCATTTGCCACTCATACAGAATCCCGCCCAGCGCATCCTGGTAGCCATCG
GACGGAGCAGCCCAGAGAGTTGTGAGCAGGTAATGGAGGCGCTCCAGGAG
AAGGGAACAAGTACAGAAGGTGTGGCTCACTTTATGCTGATGCAGTGCCT
CGGTCTGCTGGCCACTGAGAATCCGGCAGGGGTTGTGCCCCACATAAAGG
CCATATTGAGCCGTAGTCAGCCGCATCTAGTCGGGATACGCCAGGATCAC
ATCAAGCAGGCACATGCCTATGCCATCGGTAGATTCAGTGAGGCTCTACT
GGAGGAGAGCGGCAAAAAGGAGGAGGAGAACTGCTCCACGGAGATCAGTG
TGGCCTACGATGTGCTCTTCAATCAATGGCTGCACTCCCGGGAGCCAAAG
GTTTGCG
BO11412.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12132-PA | 5229 | c11.1-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c11.1-RB | 6204 | CG12132-RB | 169..1009 | 17..857 | 4205 | 100 | Plus |
| c11.1-RA | 5874 | CG12132-RA | 169..1009 | 17..857 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9280882..9281387 | 857..352 | 2530 | 100 | Minus |
| X | 23542271 | X | 9281451..9281630 | 351..172 | 900 | 100 | Minus |
| X | 23542271 | X | 9282792..9282949 | 174..17 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:16:12 has no hits.
BO11412.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:05:56 Download gff for
BO11412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:27 Download gff for
BO11412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12132-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:25:34 Download gff for
BO11412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 164..1009 | 10..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:39:51 Download gff for
BO11412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 164..1009 | 10..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:39:51 Download gff for
BO11412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9280882..9281387 | 352..857 | 100 | <- | Minus |
| X | 9281451..9281628 | 174..351 | 100 | <- | Minus |
| X | 9282793..9282954 | 10..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:25:34 Download gff for
BO11412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9174915..9175420 | 352..857 | 100 | <- | Minus |
| arm_X | 9175484..9175661 | 174..351 | 100 | <- | Minus |
| arm_X | 9176826..9176987 | 10..173 | 97 | | Minus |
BO11412.complete Sequence
5260 bp assembled on 2010-09-07
GenBank Submission: KX795931
> BO11412.complete
GAAGTTATCAGTCGACATGGACGGCCGAGGGGTTGGCGGCGGTGGTAGTG
GTGCTGCCACAGGGGGAGGATCCGCCAACAACAAATCAGCTGCTGGAAAT
AGCGCCGCCACTGGAAATGCCGATGCATCTACCGCCACAGCGGCGCCCAA
TGATAAGCCAACGATTCTGGAAGGCGTTCTCCACAACATCTTCGATGGGC
TGATGGACAAGGAGGAGCAGGTGCGGATTGCCATGCAGCAGGCGATCGTG
AAGATCTTGGAGACCCATCCGGAACGGGCTGCGGAGATCCTCAGCGAACA
TCGATCGCAGCAGCCGAAGATGACCGATCAAACAGTGGCCATGTTGTTGG
ACTGCATTCGTCGCGTGGTGGGAGCGGAAACTCCTCTGCCGCCGGCTGCA
AATCAGAAACTTATTGATCTTGCGCTGCAGGAGCTCACCAAGAATCCCGA
GCATTTGCCACTCATACAGAATCCCGCCCAGCGCATCCTGGTAGCCATCG
GACGGAGCAGCCCAGAGAGTTGTGAGCAGGTAATGGAGGCGCTCCAGGAG
AAGGGAACAAGTACAGAAGGTGTGGCTCACTTTATGCTGATGCAGTGCCT
CGGTCTGCTGGCCACTGAGAATCCGGCAGGGGTTGTGCCCCACATAAAGG
CCATATTGAGCCGTAGTCAGCCGCATCTAGTCGGGATACGCCAGGATCAC
ATCAAGCAGGCACATGCCTATGCCATCGGTAGATTCAGTGAGGCTCTACT
GGAGGAGAGCGGCAAAAAGGAGGAGGAGAACTGCTCCACGGAGATCAGTG
TGGCCTACGATGTGCTCTTCAATCAATGGCTGCACTCCCGGGAGCCAAAG
GTTTGCGTGGAGATACTGCAGGCCCTGTCCAGCATGTATCCACTGCTGCC
CAAAGACCGGATTCAGGATCAGGCCGCCCGATTGGTTCCCCAGATCCTGG
CGCTCTATCGACGCAGCGTGGACAGGAATGCCGTGACGCAGTTCCTCTGC
TCCGTGTTGAAAACGAATCTGGCACTAAATGCCACAGTCTTGGATGGCAT
AATTGACGTGTTGGTCACCCATTTGTTCGACCTGGTCTGCGTTTATCCGG
ACTATGAGAAACCGCAGACGGTGAAGGGTCACTACGAGGTGCTGCGTTGC
TTCCACCTTCTGGCCGGTCATCAACCCTACTCCACGCGCATTATGGACAC
CCTGCTGATCCACCTGCGGAACAATAGCGAACGCGAGAGGATGAAGTCCC
TGCTGATACTCACGCACCTACTCAACTCCTGTGCAGGGAATATAGAAAAC
CGGATTCCAGCCACCATTGAGTGCCTAAAGCAACTGATCCTCAGCGAAAG
AGGGATCAAAATGAAGCTAACGCTGCTAAAAACCATTGTGGCTCTCGCCC
AAAAGTCCCACATCCGGGACAAGGAGTTTGTGTGGTTCGTGGTGCGGCAT
AGTTGCCGATTCTCAAAGCCAAGTCAGGAGCACGGCAGCCAGGAGGAGCA
CGCCAATTTGGTGCTGAGCTGTGAGAACACCCTGTACATGCTGGCCTCTA
CGGTGGGCACCTTGGATGAGCTGCTCAAGAGGGAGCTGCTGAACTACTTG
ATCCTACTGGACTACACGGATATTTGCGGGAATCTCGCCAAGTGCCTGGC
TAGTTTGTTTGCCAAATCTCCGCACATAGAGTACGATATTGCGGGAGACG
ATGCCGCCACGGAGCAAGCCACACCGGAGAGTATGGGCGCTGCTGGCGAG
GATCGCAGTGTGATCAAGCGCGGAAAGGTTATGGTCCCTGGAGCCGAGAC
GATTTACGCAAGATGTCTGGCACTCCTGGGCAATCAGCAGTGCATTAAAC
GATGCTCGAATATTCTCAGTTTTCTGCGCTACTACCATCCTCAGGTGAAT
CCCGCCCTGGAGGAGCTGTGGGAGCGAAAAATTCCCGATCTTCTGCTGCA
AATCAACAGGGAGAGTGCCTATCGCCAGCTACTCCACGATTTTGTGCTTG
AAACGAATGAATTTCTGGGCGGATTGGATGAGAACTTTGCCCAGCGGCTG
GCCAGTAAGCTGGCGGACCAGATGTACTTGTATCCCATGCAACTGCCCCA
CTCCGAGTGGCATTTGCCTGACCTTAGCGCCGAGCGAGGCATGCTCCTGC
AGGCGGTGGCCCTCACCCTGCTTCAGGTGACCGATGTGGCCTGCATCCAC
ACCAAGATCGATCTCATTGTGACGACTGCCAGGCAGGAAAGATTGGACAA
GCACGTTAAGCATGCGGACTACGAAAAGCGCATTGAACCCTGTGCCAGAG
CCTTGGGCTACATTTCCCGCCAACACTTGGGGCATCTGATCAAAAAGCTA
ACCGAACTGGCCCAAGTCGGTGGGCGAAAGCACTCCACCGGTTTCTTTAG
CAATCTGCACTTTATCAAGGATACGCACAAGGAGCTAGAGAACTACAAGA
GCAACCTGCTCGTGGTCAAGGCTTTTGGTCGCATCATGGACGAAGCCGAT
CCGTTGCAATCCATTCAACACCTGGACGAAGATGACACATTGCTGGGCTT
CCTCATCCAACAGCTGGCCGTGCACAAGGACCAAACAATTATGTCGGCGA
TCCTGCAGACGCTGCTCAGCATCTGCAACCAGTTGATAGCCACCAAGGAG
CAGCTGCCGGCTCCTCTGCGTCATCGCAAGCAGATCATGGAGACGGTCTT
CAACATCCCCATCGAGGCGCCGTTCCACGACCTTCCCCTTCTGCCCACCA
TTCTCAAACTGGGCACGGACTTCATACGCATAGGTGGACCCGATACCGAG
GAGTGTGTGGACGGCGGGGTGATCTTCGAGATCGCGTGCCGCAACTTCTT
CGGCTGTGCCCAGCAGCTCAAGATGAAGTTCGACTCTCAGGAGGAGGATG
AGCGCAACAGCTTCCTGGCCAAGCACCTCAACGAATCGCTGCCGCAGTTG
AATGCGCTTGTGAGGGCCATCGTTGAACTGGACGCCTCGCCGGCCACACT
GGATCTGATTATTGGCATTCTAGAGGGCTGGACAAGGGATCGCAACTCTG
AGGTGCGAATCTGTGCCAGCCATGTGTTTAACAACACCCTCGATGTCTAC
ATCAAGTCCATGAAAATTGGCTGCGAGGCCCCGTCGAAGTTCAATCAGAC
TGGTCAAATGCTGGGCAAGATTGTGCCCAGGTGCATCGATTCGAATGGCA
CGGTGCGGCAGGTGTCCGTGGAGATCCTGCAGAAGACGCTGGAGATCGCG
TGTATCTACGAAACCCTGACGATAGCCAGCATCGACAGCACTGCCGACTG
GCTGAAGGAGATCGAGACCATCAAGGAGCACATAATCACCGACGAGCCCA
AGCAAATCTACAATCTGGCCGGCGACATTGCCAAGATTATTGCACTGCGT
ATCTCCAGCTTTCAGTACCTGCAGTTCTGCAAAACTCTACTTCATTCGCT
GCGTGATCCTGAGCAGAGTTCCACCATTGGCGCCAGTGTTGTGCTCAAGT
TCTTTATCCAGCAGAAAGGCTCTGAGCTGTTCCACGCCATTCCCGACCTG
GTTCGCGACAGTTTGCTGGCCTTGCGCGTGTGCGAGGTGCCCAGGGCGAA
GTCCGGAGTGCTAAAAGCTTTGGTGGCCCTCACCAAGCACCATCCCAAGT
TGGTGTGTGCCGAAATGCTGTCGCAGCCGCTGCCGTACGACCCCAATCTG
GTGGAGTACTGGCACCTGGTGTGCAACGACCCGGAGTTGACGGGCCTCAC
GCTGGACAACTTTCTGCAGCTGCTAAGTGGTGCCTCCCTCCAGGAAGGCG
GTCAGGATGCATCTCTTTCCGAACGTCAGAAATTAGCCAGCGGCCAGCCG
TTTGCCATTTTCTGCGCTCTGCATGAGATGCTGCCGTGCAAGGATATCAA
GGGGCAACTGGAAACAAGGTTTGCGGACATGTTCTGCATGCTGCTCACTT
CGCTAAGCAGCTACACCAACTTAGCTGCACCGAATCCTATAAACAATGCC
TCTCTAAGTCCCAACCAGACGCAATCGGGCAAAACCAAATTCGGTTTCGT
GCCCAACAAGGAGCTGATCAAGCTCAATCCCTGCCAAATAGCACTGGAAA
CTTTCCAGGCCTTCCTGACCAATCTAGAAATGGAGCAGATTGCCAGCGTG
CTGACTGTGAATACGCAACTGGCGAGCAGCGCGGACTGGCACAACTACAT
CGAATTGCTGACACCGATGGCCATCGGTCTAGGTCAACAGCTGCAGCTGG
GAAGTCCGCAGATGAGGCAACTGGTCAACTCGCTGAGCAAATATGTGGCT
TCACCATACGATGGTCAAAGAGTGGCCGCCGTGGGTATTTTCTCACGATT
GGTGCCACTGAAACCCACCGGTGAGCTAGCTGCGTCCATACTGCTCCACC
TCGGAGCCGCACTATCCGATCCCAATGCGGTAGTGCGAGGTCTCAGCATC
CAGGGCATGGGTTACGTGGGCCAGTTGGGAGAAAAGGAGGCGAAGCGCTA
CTCGGAAACTGCCATCGGTGCTCTGTTGAAGGGAGTCGACGATCCGGTGG
GCGATTGCCTAATCAACATTCCGCTGGAGAGCATGCGCGGCCTGTCTGGA
ATACTGCGAGCATTGCCCAGCGAGCGGGTAGAGCCCTTCCACGTCTCCCT
CGCCATCCGGATTCGACCGTTTCTCGGCAACTATGCACTAGAGATGCGAG
AGGCGGCTATCCAACTGTTTGGCGATATATGCGAGGGCAAGCACGATGAC
GGCAGCAGTTCACCCACATCCTCGATGGAGGCACTGAGAGAGCAGCTCAT
CGCCAATCTCTTCCCGCTGCTACTGCATCTCAGCGAGAGCGAAGTGGCTA
TTGCCTCGGCCTGTCGTGGAACACTTCAGCGGGTTTGTCGTCTCCTGACA
GCTCCAAGGGTCGTGGAGATGGCGGAGCAGCAGTTGGGCGAGGAACGAGG
TCACCAGCTCAACTACAGCAGCTTTGTGCTGGAATTTGTCAAGACAATTG
CACTGGAGCTGACGGATCACATCCAGGACTTCATCGATTCGTGCCTGCCG
CAGTTGCGTAGTCAGTGGCCCGAGGTGCGAGGTAGTGCAGCCATTGTAAT
TGGCATTCTGCACAACTTCCTCAGCGAGAGAAACGTCCAAACGGAGACTG
TGGCCAGCAAGATTGCCGTGCTGCTCAAGGACGAACAGGCGCTGGTGCGG
ATGAGGGCAGCCACTGCTCTGGGTTACTTCTTTGGGGACATCGCAAGCTT
TCTAGACCAT
BO11412.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c11.1-RB | 5229 | CG12132-PB | 1..5226 | 17..5242 | 26130 | 100 | Plus |
| c11.1-RA | 5229 | CG12132-PA | 1..5226 | 17..5242 | 26130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c11.1-RB | 6204 | CG12132-RB | 169..5394 | 17..5242 | 26130 | 100 | Plus |
| c11.1-RA | 5874 | CG12132-RA | 169..5394 | 17..5242 | 26130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9278954..9281387 | 2785..352 | 12170 | 100 | Minus |
| X | 23542271 | X | 9276493..9277386 | 5000..4107 | 4470 | 100 | Minus |
| X | 23542271 | X | 9278252..9278900 | 3429..2781 | 3245 | 100 | Minus |
| X | 23542271 | X | 9277715..9278190 | 3904..3429 | 2380 | 100 | Minus |
| X | 23542271 | X | 9277448..9277653 | 4109..3904 | 1030 | 100 | Minus |
| X | 23542271 | X | 9281451..9281630 | 351..172 | 900 | 100 | Minus |
| X | 23542271 | X | 9282792..9282949 | 174..17 | 790 | 100 | Minus |
| X | 23542271 | X | 9276128..9276268 | 5242..5102 | 705 | 100 | Minus |
| X | 23542271 | X | 9276328..9276431 | 5103..5000 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:47:09 has no hits.
BO11412.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-09 16:57:14 Download gff for
BO11412.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 151..5376 | 17..5244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:51 Download gff for
BO11412.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 169..5394 | 17..5244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:18 Download gff for
BO11412.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c11.1-RA | 169..5394 | 17..5244 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:18 Download gff for
BO11412.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9276126..9276267 | 5103..5244 | 98 | <- | Minus |
| X | 9276329..9276431 | 5000..5102 | 100 | <- | Minus |
| X | 9276494..9277384 | 4109..4999 | 100 | <- | Minus |
| X | 9277449..9277652 | 3905..4108 | 100 | <- | Minus |
| X | 9277715..9278189 | 3430..3904 | 100 | <- | Minus |
| X | 9278252..9278897 | 2784..3429 | 100 | <- | Minus |
| X | 9278956..9281387 | 352..2783 | 100 | <- | Minus |
| X | 9281451..9281628 | 174..351 | 100 | <- | Minus |
| X | 9282793..9282949 | 17..173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:51 Download gff for
BO11412.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9170159..9170300 | 5103..5244 | 98 | <- | Minus |
| arm_X | 9170362..9170464 | 5000..5102 | 100 | <- | Minus |
| arm_X | 9170527..9171417 | 4109..4999 | 100 | <- | Minus |
| arm_X | 9171482..9171685 | 3905..4108 | 100 | <- | Minus |
| arm_X | 9171748..9172222 | 3430..3904 | 100 | <- | Minus |
| arm_X | 9172285..9172930 | 2784..3429 | 100 | <- | Minus |
| arm_X | 9172989..9175420 | 352..2783 | 100 | <- | Minus |
| arm_X | 9175484..9175661 | 174..351 | 100 | <- | Minus |
| arm_X | 9176826..9176982 | 17..173 | 100 | | Minus |
BO11412.pep Sequence
Translation from 16 to 5260
> BO11412.pep
MDGRGVGGGGSGAATGGGSANNKSAAGNSAATGNADASTATAAPNDKPTI
LEGVLHNIFDGLMDKEEQVRIAMQQAIVKILETHPERAAEILSEHRSQQP
KMTDQTVAMLLDCIRRVVGAETPLPPAANQKLIDLALQELTKNPEHLPLI
QNPAQRILVAIGRSSPESCEQVMEALQEKGTSTEGVAHFMLMQCLGLLAT
ENPAGVVPHIKAILSRSQPHLVGIRQDHIKQAHAYAIGRFSEALLEESGK
KEEENCSTEISVAYDVLFNQWLHSREPKVCVEILQALSSMYPLLPKDRIQ
DQAARLVPQILALYRRSVDRNAVTQFLCSVLKTNLALNATVLDGIIDVLV
THLFDLVCVYPDYEKPQTVKGHYEVLRCFHLLAGHQPYSTRIMDTLLIHL
RNNSERERMKSLLILTHLLNSCAGNIENRIPATIECLKQLILSERGIKMK
LTLLKTIVALAQKSHIRDKEFVWFVVRHSCRFSKPSQEHGSQEEHANLVL
SCENTLYMLASTVGTLDELLKRELLNYLILLDYTDICGNLAKCLASLFAK
SPHIEYDIAGDDAATEQATPESMGAAGEDRSVIKRGKVMVPGAETIYARC
LALLGNQQCIKRCSNILSFLRYYHPQVNPALEELWERKIPDLLLQINRES
AYRQLLHDFVLETNEFLGGLDENFAQRLASKLADQMYLYPMQLPHSEWHL
PDLSAERGMLLQAVALTLLQVTDVACIHTKIDLIVTTARQERLDKHVKHA
DYEKRIEPCARALGYISRQHLGHLIKKLTELAQVGGRKHSTGFFSNLHFI
KDTHKELENYKSNLLVVKAFGRIMDEADPLQSIQHLDEDDTLLGFLIQQL
AVHKDQTIMSAILQTLLSICNQLIATKEQLPAPLRHRKQIMETVFNIPIE
APFHDLPLLPTILKLGTDFIRIGGPDTEECVDGGVIFEIACRNFFGCAQQ
LKMKFDSQEEDERNSFLAKHLNESLPQLNALVRAIVELDASPATLDLIIG
ILEGWTRDRNSEVRICASHVFNNTLDVYIKSMKIGCEAPSKFNQTGQMLG
KIVPRCIDSNGTVRQVSVEILQKTLEIACIYETLTIASIDSTADWLKEIE
TIKEHIITDEPKQIYNLAGDIAKIIALRISSFQYLQFCKTLLHSLRDPEQ
SSTIGASVVLKFFIQQKGSELFHAIPDLVRDSLLALRVCEVPRAKSGVLK
ALVALTKHHPKLVCAEMLSQPLPYDPNLVEYWHLVCNDPELTGLTLDNFL
QLLSGASLQEGGQDASLSERQKLASGQPFAIFCALHEMLPCKDIKGQLET
RFADMFCMLLTSLSSYTNLAAPNPINNASLSPNQTQSGKTKFGFVPNKEL
IKLNPCQIALETFQAFLTNLEMEQIASVLTVNTQLASSADWHNYIELLTP
MAIGLGQQLQLGSPQMRQLVNSLSKYVASPYDGQRVAAVGIFSRLVPLKP
TGELAASILLHLGAALSDPNAVVRGLSIQGMGYVGQLGEKEAKRYSETAI
GALLKGVDDPVGDCLINIPLESMRGLSGILRALPSERVEPFHVSLAIRIR
PFLGNYALEMREAAIQLFGDICEGKHDDGSSSPTSSMEALREQLIANLFP
LLLHLSESEVAIASACRGTLQRVCRLLTAPRVVEMAEQQLGEERGHQLNY
SSFVLEFVKTIALELTDHIQDFIDSCLPQLRSQWPEVRGSAAIVIGILHN
FLSERNVQTETVASKIAVLLKDEQALVRMRAATALGYFFGDIASFLDH
BO11412.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c11.1-PB | 1742 | CG12132-PB | 1..1742 | 1..1742 | 8894 | 100 | Plus |
| c11.1-PA | 1742 | CG12132-PA | 1..1742 | 1..1742 | 8894 | 100 | Plus |
