Clone Sequence Records
BO11417.3prime Sequence
910 bp (755 high quality bases) assembled on 2006-04-19
> BO11417.3prime
ATGGTCTAGAAAGCTTGCGTCTAGATAGTCCATGGTCTTGATGAACTTGA
CCACGGATCCGAAGAGCGTCCAATAGAACTCGTCCTCGCCCTCCAGCTTT
TTGCCCAGAAAGCAGCTGATATACTCCACGGTGGATAGCAGATACGGGGG
ATTGGCCATTATCACTACGTATATGAGCACGGGCAGCAGATCATCGGCTG
CGGGCACCCGACCACTGGACATGCGCAGCAGGCTCATGATGCTCGAGATG
CAGTTGATGATGCACTGCAGCTTCTCGCGTGGCGTCTTGTAGGCGGCCAT
GTGGCACAGCTGTTGCTGGGCAAACGTCCACGGAGCCTCGCCCAAATACT
CCTGGGCGATGCACAGCGCCGGGTGGGCGGGATGTACAAAGCGCTGCAGT
TTACCAATATGCGCCGAGAGCACCTCGTCCCGCGACACATCGGCATCCTC
GTTGGGGAACATCACCTGCTCGTACATCTGCTCCAGCAGCATTCGCTCGA
TGGCCACGCGTGCAGCATCCACCTGCCACTCGTCCTGTAGATCGGCACTG
GAGCGCAGCTCCTGCAGCAGGGACTCCACAAATTCCTCGGTGAGCTCGAC
GCGTTCGTCGCTGGCCCGCAGCTGGGCGAACTCCGCTTGAAACTGCTCCA
GCTTCTCCTGCTGACGGGACCAAGCCAGATACATCCGGACCAGTGCTTGC
AGCAGACATCTCTGGCTGCTGCGCGCCTCGCCACGCAATCGCGCCTCCAG
CTGCTCCAATTGCTCCGATCGCAGCAGGAGCTGTTGCCTGTGTCGCATCA
GGTACTGCAGGTAGCTTTGTCGTCGCTCCAGATCCCGCTGCAGTTCGGCC
AGAAGCTGGCCATGCTGTGGTCGCTCCATTGGGCCAACCAGCGCAGGGCC
TCGGCACGTG
BO11417.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1657-PA | 5139 | CG1657-RA | 4277..5136 | 878..19 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1657-RA | 5830 | CG1657-RA | 4391..5284 | 910..19 | 4405 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11332494..11333146 | 905..254 | 3200 | 99.7 | Minus |
| X | 23542271 | X | 11333387..11333525 | 157..19 | 695 | 100 | Minus |
| X | 23542271 | X | 11333222..11333319 | 253..156 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:51:35 has no hits.
BO11417.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:03 Download gff for
BO11417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-PA | 4243..5139 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:37 Download gff for
BO11417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-PA | 4243..5139 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:23:15 Download gff for
BO11417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-RA | 4391..5288 | 13..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:29 Download gff for
BO11417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-RA | 4391..5288 | 13..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:29 Download gff for
BO11417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11332488..11333146 | 254..910 | 99 | -> | Minus |
| X | 11333222..11333318 | 157..253 | 100 | -> | Minus |
| X | 11333388..11333529 | 13..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:23:15 Download gff for
BO11417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11226521..11227179 | 254..910 | 99 | -> | Minus |
| arm_X | 11227255..11227351 | 157..253 | 100 | -> | Minus |
| arm_X | 11227421..11227562 | 13..156 | 97 | | Minus |
BO11417.5prime Sequence
853 bp (800 high quality bases) assembled on 2006-04-19
> BO11417.5prime
GAAGTTATCAGTCGACATGGAGCCCCCAGCTGCTGGCAATCTGCTGGAGA
TCATGGACCTGGCCCGCACTCTCCGCCAGGAGCAGCTCTTCATCCAGCAG
GAGCAGGCGGCCTTTGCCCAGCTCACTGGAGCCTTTGAGAGCAATGCAGG
GACCATAACCAAGTTGGCCTTTGTGTGTGCCCAGCAGCGGCAGATACTCA
ATGAGCTGCTCCTGGCGCGCACAGATCAGGATCCGCTGCTCTTCTGCCGC
CGAGCGAGTGCCTACGATAGTGCCCAATTCGTGGACGCCAAGCAGTTGCT
GCCCTATGAGCACGCCTTGGCCTACGAAGATCTGTTCAACTACTTGTATA
ATACACCCTATTTGTTGGCCCTATCCCTGGCCACCGCGGATCGCTTATCC
CTGCTCTCGGCCAGCCAGCTTGGCCAAATTATTAATACCATAGCGACGGG
ACTGTATGGCAATGCCATCAATACCAAGGATGTGGAACTGCTGCTTAAAT
TGCTGCGGGAACTGATTGAAATCCAATTGCTGACCAGCGAACAGCCCAGA
CGTTTGCTGAGAACCAATAGCAGCTCCTTTGCCCGACTGTATCAGCGATT
GGTTGAGAGTCTGTTCTCGGCGAGAATTTTCCTAACCGCCGCGCTCCATG
CGCCGCTCATGGGTGTGCTGAGTGAGCACGAGATTTGGCTGGATCTGGAT
CCGCACAAACTAATGCAGACCTTCACGCCCAAGGAGCGGGAGAAGCGCTT
TGGTCGCGAGGGTGATGAGGAATACCAGCGAAATGTGGCTCGCTTTCATG
CGGAGACTTTGGGCAAGCTGCACTCCCATGTCCAGAGTTTGTGAGAAGCT
TGC
BO11417.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1657-PA | 5139 | CG1657-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1657-RA | 5830 | CG1657-RA | 148..986 | 16..853 | 4140 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11328474..11329019 | 309..853 | 2650 | 99.5 | Plus |
| X | 23542271 | X | 11328045..11328196 | 16..167 | 745 | 99.3 | Plus |
| X | 23542271 | X | 11328259..11328407 | 162..310 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:20:16 has no hits.
BO11417.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:03 Download gff for
BO11417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-PA | 1..838 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:38 Download gff for
BO11417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-PA | 1..838 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:38:31 Download gff for
BO11417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-RA | 148..986 | 16..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:41 Download gff for
BO11417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-RA | 148..986 | 16..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:41 Download gff for
BO11417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11328045..11328192 | 16..163 | 100 | -> | Plus |
| X | 11328261..11328407 | 164..310 | 100 | -> | Plus |
| X | 11328476..11329019 | 311..853 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:38:31 Download gff for
BO11417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11222294..11222440 | 164..310 | 100 | -> | Plus |
| arm_X | 11222078..11222225 | 16..163 | 100 | -> | Plus |
| arm_X | 11222509..11223052 | 311..853 | 99 | | Plus |
BO11417.complete Sequence
5170 bp assembled on 2008-11-10
GenBank Submission: KX795367
> BO11417.complete
GAAGTTATCAGTCGACATGGAGCCCCCAGCTGCTGGCAATCTGCTGGAGA
TCATGGACCTGGCCCGCACTCTCCGCCAGGAGCAGCTCTTCATCCAGCAG
GAGCAGGCGGCCTTTGCCCAGCTCACTGGAGCCTTTGAGAGCAATGCAGG
GACCATAACCAAGTTGGCCTTTGTGTGTGCCCAGCAGCGGCAGATACTCA
ATGAGCTGCTCCTGGCGCGCACAGATCAGGATCCGCTGCTCTTCTGCCGC
CGAGCGAGTGCCTACGATAGTGCCCAATTCGTGGACGCCAAGCAGTTGCT
GCCCTATGAGCACGCCTTGGCCTACGAAGATCTGTTCAACTACTTGTATA
ATACACCCTATTTGTTGGCCCTATCCCTGGCCACCGCGGATCGCTTATCC
CTGCTCTCGGCCAGCCAGCTTGGCCAAATTATTAATACCATAGCGACGGG
ACTGTATGGCAATGCCATCAATACCAAGGATGTGGAACTGCTGCTTAAAT
TGCTGCGGGAACTGATTGAAATCCAATTGCTGACCAGCGAACAGCCCAGA
CGTTTGCTGAGAACCAATAGCAGCTCCTTTGCCCGACTGTATCAGCGATT
GGTTGAGAGTCTGTTCTCGGCGAGAATTTTCCTAACCGCCGCGCTCCATG
CGCCGCTCATGGGTGTGCTGAGTGAGCACGAGATTTGGCTGGATCTGGAT
CCGCACAAACTAATGCAGACCTTCACGCCCAAGGAGCGGGAGAAGCGCTT
TGGTCGCGAGGGTGATGAGGAATACCAGCGAAATGTGGCTCGCTTTCATG
CGGAGACTTTGGGCAAGCTGCACTCCCATGTCCAAGAGTTTGTGAAGAGC
TTGCAACAGAGTTGGGCGCTATTTCCCAGCTCTCTTAGATGGCTACTCCA
AACACTGAGCCAACAGCTCCGGCAGTCGTTGCGCCACGAGGAGCAGGAGA
TCCGCCAGCTGCTCACCGACCTGGTGTTCACACACTTCATTTCACCAGCC
ATTGCCAGTGCTGATCTCCTGGGCATCATCGATGTTAATGTGAGTGAACG
GATGCGGCACAATCTTAATCAGATTGTGAAATTGCTTCAGCGACTGGCAC
TGAACGATGAGGATAGCGAACTGGTGCAGCTGATGGAGCTCTTGATGCTG
GGACAGACTGGCGAAGATGTGGTGGCCATATTGCCGCAACAAAGCGACTT
CGAGCGTTCCCAATTGGCCATCAATCAAAGGGAGCTGGCACAGCTCGTGG
AGTTCTTTCGTTTACTAACGGCCAGAGACGAATATGACATATCCGTCGAA
GAGAGGCAGCGGCTGCAGAGGATTCTCGGCAGGATACCCAAGCAGCAGGT
GCAGCAGCAACAGCAAACACCCAAGGATGCGCCAGATTCCCGAGAAAGTC
CGGAGAAGAGCAAAAAAAGCAACAAGAGTCTGATGAGCCTAGGCAAAGCC
AAAAAGAAACTGGCGAAAGGCATGAGTTTCAGCAGTGGCAGTAGTAACCA
TAATCCGGTTCCAGTCTCAGAGCCACTGACCAATGGCCAGGCCAACACCT
CGAATGGCAGCGGAGGACTGGGTGCTGATCTCGAGCACTGTTCCTCGCAC
AGCGGCAGCAACACCAGCTTGAGTTCCTGCGGAGCTAACATGCCAACTAC
AAATGATCCCCTGGACATGTCCACCTCGTCGGATCCCGTGTTGGTATTCA
GTCTCTATAATGCGGGAGCAAAAAGTAAGCTGAAACCGCTGACAGAGGAG
GAGGTCTTGAAGATGAACAGCATCGGTCAGGATGGCAGTAATCTGCTGCC
AGCGGTGGTCACCACTGCTCCTTTGGCGCCATCTTCGAACAACGACGATG
TGAGTAGTCTGGAGGCTATGCGGCGGCCGCAGGATGATGCATCGATAGGA
AATTCGGATAATCTGGAGGCTATCAGTGAGGCGGCACATTCAGTTGCCAG
TTCGCTTGACTTGGAGGAGCAGCAGGAGCGAGATGTTCACGAAAACGAGG
ACAATCTCTCCGATATGGTTTCGGCCAATGTGTCGGGCAGGGGAACACCG
AACATCAGTGGTCGCGATACACCATCATCGCAGGTAACTGATGGTGATGG
CGCTGGCGGGGATTTGGGCCATCATCATGGTGTTCACGCCCGGGCAGCTG
CCAATCCGCAAATGCAAAAGATGCTGCTATCCAAGGCCAGATCCGACATC
GAGGATAAGTTCTGTAAATTCGAACTGAAGAAATTCGAGGGCGACGAGAA
TGTGAGCATCATATCCGATACATGGTCCACGGATGTGCTGGCCTCCGATT
CGGAAAACACATTGGATGCCACAGTGAGCGAACGTGGGGATAGGGATAGA
AATTTCTCCACACCCCTAATACCCTCCGCCGTCGTCCTGCCCGGCGATAA
CAATTTCGTTGTCGAGGCTTTGGCCAGAGCTGGTCGCGTCTCGGGCGTCC
ATGGACCACAGTTGGATGCATCCGATCAGCGATCGGAGAGCAACTGGAGC
ACTGATGTCTTGGCCAGCGATTCGGAGAAGCTGGCTGAAATAGACACCGA
TGACAATGTTTCCATTACGACCAAATCGGATACGACGGCGCCACAGGCAG
CGGTCCTCGACGACGACGATGAGGATGAGCAGACGCCCGGCAGCAGTGGC
GATGGTGAGCCCGATCCGGATCGGGGAAACGGCAGCGAGCGTAGCCAGGA
GGATTCGGCCTTTTTCGATGCCGTCAACTCGTATGAGGATGCCAATCTGT
ATCATGGCGCATCTTCGTTAGCCAGAAGCTCGGTGCGGACCAGCTATCAT
GTTCTGGGCGGCGAGAGCAGTTTCCAGCAGCAGTACAAGTGCAGCGGAGC
AGATTCCAGTGGTCGCAAGACCACCCCGCTGATGGGTACATCCTGCATGC
GCCGCCAAACGTCCGCGGAGAGCAGCATTAGTAATCAGAGCCTGAACTTG
GAGGAACCGCCACCGCCGATGGGCAAGCATCATCACCACCATAGAGAGCA
CCATCATCGCGACTACCATCATCATCACCGAGAGAGGGAGCGGGAGCGGG
AGCGGGAACGGTCGGCACTTAAGAAGAAGAAACACCAGCAGCAGGAGAAG
GAGCATCGCGATCTAATCGATTTCAGCGACTGCAGCGAGGACAAAGAAGA
GCTGGCGAGGAATAGGGATGAGGAGCAGCCGCCTGGCTTGGTGCAACAAC
TGCTGGATATGATTAACCAGGATGAACAGACCGGCGCAGTTTCAAGTTCC
TCGCCCAATGTGGAACACCGTCGCATCTCCATCGAACAACGATCGGCCAT
CATAGATGGTCGTCGAAATGGCATTCTGGCGGGCAGTATGCGCCGCCATC
AGAGCTTGAACTACGAGAATCACGAGATTATGCTGAACTCCATGTTGCCC
AAAACCGACGATGACAAGCAGGAGATGCTACTTTGTGTGCAGACGCAGCA
ATTGCAGCTGGAGGAGCGAAGAGGATCCGCCGGATTGAGGCCAGAGGTGG
ATGGAGCTAGCGGAATAGCAGCGGCTGGAGGATCGGGCCTGAAGCCACCC
ACCAAGGCGACCGGAGCCATACCAAAGAGCATTAGTTTCGACGCCAGCGC
GGACAAGGACAAGCAGACGTATCATCGGGACGGGGAACGGGATCGCGAAA
GGGACAGGGAACGGGAACGTGATCGAGAAAGAGATCGGGAGCGAGATCGT
GAACGGGATCGGGAGCGAGATCACCACGGTGCTGGCATATTCAACAAGCT
TAGGCAGGGTATTTTCAAGAATCGCCGCGGAGCCAGCGCCAAAAATGCAA
GCAACTCCAGTAACCAATCGAATCCGGCGGCCAGCACTTCTAGTGTCCAA
GCGGATATTCGCAGCGTTAGCTTCGATCCCAGTGCCGGATGCGATAACTT
CGGCACCCACTACTGTGATACGAGCGAGGACATCCTGGCCAAGTACCGCC
GCAAGGTGAGCAGCTCCAGCGAGGCAACCAACTCCGATTCCACGGGCAAT
GGCCATGGCGTAGGGTCGACGGGATCCGTTGGAGCAGCTGCCCATCTGCA
TAAGCACATGAACGGAGGGCATATTCCTGGCGTGGTCTTTGGCTGTGTGA
AGCAGAAGCTGCGCACGGTGCTTTCCCGGACGGATTTGCACAGTGGCGAT
TTCCGCCAAACCTCGACCACATCGACAACGATGGCCACACCGCTACAGAT
CTACCTGCAGATTCAGTTGGCGCAGTGCATCAGCCTGCAGCGATTACCAC
AGATCTCGCACGTGGCCGAGGCCCTGCGCTGTTTGGCCCAATTGGAGCGA
CCACAGCATGGCCAGCTTCTGGCCGAACTGCAGCGGGATCTGGAGCGACG
ACAAAGCTACCTGCAGTACCTGATGCGACACAGGCAACAGCTCCTGCTGC
GATCGGAGCAATTGGAGCAGCTGGAGGCGCGATTGCGTGGCGAGGCGCGC
AGCAGCCAGAGATGTCTGCTGCAAGCACTGGTCCGGATGTATCTGGCTTG
GTCCCGTCAGCAGGAGAAGCTGGAGCAGTTTCAAGCGGAGTTCGCCCAGC
TGCGGGCCAGCGACGAACGCGTCGAGCTCACCGAGGAATTTGTGGAGTCC
CTGCTGCAGGAGCTGCGCTCCAGTGCCGATCTACAGGACGAGTGGCAGGT
GGATGCTGCACGCGTGGCCATCGAGCGAATGCTGCTGGAGCAGATGTACG
AGCAGGTGATGTTCCCCAACGAGGATGCCGATGTGTCGCGGGACGAGGTG
CTCTCGGCGCATATTGGTAAACTGCAGCGCTTTGTACATCCCGCCCACCC
GGCGCTGTGCATCGCCCAGGAGTATTTGGGCGAGGCTCCGTGGACGTTTG
CCCAGCAACAGCTGTGCCACATGGCCGCCTACAAGACGCCACGCGAGAAG
CTGCAGTGCATCATCAACTGCATCTCGAGCATCATGAGCCTGCTGCGCAT
GTCCAGTGGTCGGGTGCCCGCAGCCGATGATCTGCTGCCCGTGCTCATAT
ACGTAGTGATAATGGCCAATCCCCCGTATCTGCTATCCACCGTGGAGTAT
ATCAGCTGCTTTCTGGGCAAAAAGCTGGAGGGCGAGGACGAGTTCTATTG
GACGCTCTTCGGATCCGTGGTCAAGTTCATCAAGACCATGGACTATCTAG
ACGCAAGCTTTCTAGACCAT
BO11417.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1657-RA | 5139 | CG1657-PA | 1..5136 | 17..5152 | 25680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1657-RA | 5830 | CG1657-RA | 148..5284 | 16..5152 | 25685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11328474..11332234 | 309..4069 | 18805 | 100 | Plus |
| X | 23542271 | X | 11332297..11333146 | 4068..4917 | 4250 | 100 | Plus |
| X | 23542271 | X | 11328045..11328196 | 16..167 | 745 | 99.3 | Plus |
| X | 23542271 | X | 11328259..11328407 | 162..310 | 745 | 100 | Plus |
| X | 23542271 | X | 11333387..11333525 | 5014..5152 | 695 | 100 | Plus |
| X | 23542271 | X | 11333222..11333319 | 4918..5015 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:23:16 has no hits.
BO11417.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:08:52 Download gff for
BO11417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-RA | 71..5211 | 16..5158 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:37 Download gff for
BO11417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-RA | 149..5284 | 17..5154 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:10 Download gff for
BO11417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-RA | 72..5207 | 17..5154 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:17 Download gff for
BO11417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1657-RA | 149..5284 | 17..5154 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:17 Download gff for
BO11417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11328261..11328407 | 164..310 | 100 | -> | Plus |
| X | 11328046..11328192 | 17..163 | 100 | -> | Plus |
| X | 11328476..11332233 | 311..4068 | 100 | -> | Plus |
| X | 11332298..11333146 | 4069..4917 | 100 | -> | Plus |
| X | 11333222..11333318 | 4918..5014 | 100 | -> | Plus |
| X | 11333388..11333525 | 5015..5154 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:37 Download gff for
BO11417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11222079..11222225 | 17..163 | 100 | -> | Plus |
| arm_X | 11222294..11222440 | 164..310 | 100 | -> | Plus |
| arm_X | 11222509..11226266 | 311..4068 | 100 | -> | Plus |
| arm_X | 11226331..11227179 | 4069..4917 | 100 | -> | Plus |
| arm_X | 11227255..11227351 | 4918..5014 | 100 | -> | Plus |
| arm_X | 11227421..11227558 | 5015..5154 | 98 | | Plus |
BO11417.pep Sequence
Translation from 16 to 5170
> BO11417.pep
MEPPAAGNLLEIMDLARTLRQEQLFIQQEQAAFAQLTGAFESNAGTITKL
AFVCAQQRQILNELLLARTDQDPLLFCRRASAYDSAQFVDAKQLLPYEHA
LAYEDLFNYLYNTPYLLALSLATADRLSLLSASQLGQIINTIATGLYGNA
INTKDVELLLKLLRELIEIQLLTSEQPRRLLRTNSSSFARLYQRLVESLF
SARIFLTAALHAPLMGVLSEHEIWLDLDPHKLMQTFTPKEREKRFGREGD
EEYQRNVARFHAETLGKLHSHVQEFVKSLQQSWALFPSSLRWLLQTLSQQ
LRQSLRHEEQEIRQLLTDLVFTHFISPAIASADLLGIIDVNVSERMRHNL
NQIVKLLQRLALNDEDSELVQLMELLMLGQTGEDVVAILPQQSDFERSQL
AINQRELAQLVEFFRLLTARDEYDISVEERQRLQRILGRIPKQQVQQQQQ
TPKDAPDSRESPEKSKKSNKSLMSLGKAKKKLAKGMSFSSGSSNHNPVPV
SEPLTNGQANTSNGSGGLGADLEHCSSHSGSNTSLSSCGANMPTTNDPLD
MSTSSDPVLVFSLYNAGAKSKLKPLTEEEVLKMNSIGQDGSNLLPAVVTT
APLAPSSNNDDVSSLEAMRRPQDDASIGNSDNLEAISEAAHSVASSLDLE
EQQERDVHENEDNLSDMVSANVSGRGTPNISGRDTPSSQVTDGDGAGGDL
GHHHGVHARAAANPQMQKMLLSKARSDIEDKFCKFELKKFEGDENVSIIS
DTWSTDVLASDSENTLDATVSERGDRDRNFSTPLIPSAVVLPGDNNFVVE
ALARAGRVSGVHGPQLDASDQRSESNWSTDVLASDSEKLAEIDTDDNVSI
TTKSDTTAPQAAVLDDDDEDEQTPGSSGDGEPDPDRGNGSERSQEDSAFF
DAVNSYEDANLYHGASSLARSSVRTSYHVLGGESSFQQQYKCSGADSSGR
KTTPLMGTSCMRRQTSAESSISNQSLNLEEPPPPMGKHHHHHREHHHRDY
HHHHRERERERERERSALKKKKHQQQEKEHRDLIDFSDCSEDKEELARNR
DEEQPPGLVQQLLDMINQDEQTGAVSSSSPNVEHRRISIEQRSAIIDGRR
NGILAGSMRRHQSLNYENHEIMLNSMLPKTDDDKQEMLLCVQTQQLQLEE
RRGSAGLRPEVDGASGIAAAGGSGLKPPTKATGAIPKSISFDASADKDKQ
TYHRDGERDRERDRERERDRERDRERDRERDRERDHHGAGIFNKLRQGIF
KNRRGASAKNASNSSNQSNPAASTSSVQADIRSVSFDPSAGCDNFGTHYC
DTSEDILAKYRRKVSSSSEATNSDSTGNGHGVGSTGSVGAAAHLHKHMNG
GHIPGVVFGCVKQKLRTVLSRTDLHSGDFRQTSTTSTTMATPLQIYLQIQ
LAQCISLQRLPQISHVAEALRCLAQLERPQHGQLLAELQRDLERRQSYLQ
YLMRHRQQLLLRSEQLEQLEARLRGEARSSQRCLLQALVRMYLAWSRQQE
KLEQFQAEFAQLRASDERVELTEEFVESLLQELRSSADLQDEWQVDAARV
AIERMLLEQMYEQVMFPNEDADVSRDEVLSAHIGKLQRFVHPAHPALCIA
QEYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSSGRV
PAADDLLPVLIYVVIMANPPYLLSTVEYISCFLGKKLEGEDEFYWTLFGS
VVKFIKTMDYLDASFLDH
BO11417.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1657-PA | 1712 | CG1657-PA | 1..1712 | 1..1712 | 8734 | 100 | Plus |
| Rabex-5-PA | 696 | CG9139-PA | 208..373 | 1546..1709 | 173 | 29.8 | Plus |
