Clone Sequence Records
BO11419.3prime Sequence
848 bp (737 high quality bases) assembled on 2006-04-19
> BO11419.3prime
ATGGTCTAGAAAGCTTGCGACAGTTGTGCCGTACGCGTTGTTGAAAACGG
CACGCGAACTATCCGTATCCAAGGATATATCTTCGGGACTGGCCAAGTCC
ACGCGCACATTAGAGTTGGTTCGACGTCGTGCCGTTTGCGCTGCGCCCCA
GTTGCTTAGAGTCCAATGGAAACCAGAGGAGCTGGCAGCCGGCTCGGTGT
CCACCTTAACCTGGGTGCAGACCTCTCGATTGCCGCATGGAAGGGTTTCT
GTACCGTTGCCCAGTGCCGAGCCCGACACAGAACCTGATCCCGAGTCACG
AGTACTGCCAATGCTGCTGCTGCTGGCCAGCGAGTCATTGCTCGATTCAA
TGACCGCTCCCCGATAACGCGCCACAGCCTGGACAGCCATGGCATCGCCG
CCTTGGCAGTCCTCTATCGATTTAAGAATTTCCCAGACCAGCTCCGAGTC
CAAGGGGATGGGCTGTTCGGTGTCGCGATTGTAAATGGCAATAGCAATGT
GAACGGGATGGGGCACTGGCAATGGGATGAGCAGCTTTTCCGTAACGCTC
TTCTCTCCGCTTTGCTGCTTCCACGGTCGCCAGGACTTCTGGCCTTCTTG
TAAAGTCTTCGGCACATGCTGGGCACGGTGGGCACGCACCCTCGGTGTGG
TCAATCCCACAGACATATCCCTTTTCTCGGGCTTGCGGAAGGTGAGCGTT
ATGCGGGAGCGTGGATTGAATGCAGTCACTTCGAGGAAGGGCAGATGCAC
TTGAACGTTGCCACGCGGGGCGTACACATTGCCGAGCAGATCCAGGCCCT
TGGAGCCAATCACATCGTTTGCATTCTTCACCATCTCCGTATAACGCA
BO11419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2519-PB | 3843 | CG2519-RB | 3011..3840 | 848..19 | 4150 | 100 | Minus |
| CG2519-PA | 3915 | CG2519-RA | 3083..3912 | 848..19 | 4150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2519-RC | 5863 | CG2519-RC | 3509..4338 | 848..19 | 4150 | 100 | Minus |
| CG2519-RA | 5665 | CG2519-RA | 3311..4140 | 848..19 | 4150 | 100 | Minus |
| CG2519-RB | 5593 | CG2519-RB | 3239..4068 | 848..19 | 4150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5541553..5541838 | 387..672 | 1430 | 100 | Plus |
| 3R | 32079331 | 3R | 5541035..5541240 | 19..224 | 1030 | 100 | Plus |
| 3R | 32079331 | 3R | 5541891..5542069 | 670..848 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 5541327..5541494 | 221..388 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:55:30 has no hits.
BO11419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:06 Download gff for
BO11419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-PB | 3012..3843 | 15..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:42 Download gff for
BO11419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-PA | 3084..3915 | 15..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:50:42 Download gff for
BO11419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-RB | 3240..4079 | 10..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:07 Download gff for
BO11419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-RB | 3240..4079 | 10..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:07 Download gff for
BO11419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5541024..5541238 | 10..222 | 98 | <- | Plus |
| 3R | 5541329..5541493 | 223..387 | 100 | <- | Plus |
| 3R | 5541554..5541836 | 388..670 | 100 | <- | Plus |
| 3R | 5541892..5542068 | 671..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:50:42 Download gff for
BO11419.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1366746..1366960 | 10..222 | 98 | <- | Plus |
| arm_3R | 1367051..1367215 | 223..387 | 100 | <- | Plus |
| arm_3R | 1367276..1367558 | 388..670 | 100 | <- | Plus |
| arm_3R | 1367614..1367790 | 671..847 | 100 | | Plus |
BO11419.5prime Sequence
821 bp (766 high quality bases) assembled on 2006-04-19
> BO11419.5prime
GAAGTTATCAGTCGACATGCCGTCGGTTCCAGCGCCGGCTGCTGTGCCAG
CCACTTTGTCGGTCAGCGCTTCCGGCACTCAGATGCTGCGCCCTCAGACT
CTGGCCGGCCCCGAGCGGGAGCCTATCGAGTTCAACATCAACCTGGTGGG
AGCTCCTCCCGAGGTGGAGCAGCTGGTGGAGCAGATCAAGAGCGTGGCCG
AGCAATTCCTCTACCACTGGAAGAGCTTTCCCATTGTTTTGCCTCAGGCG
CTGGCTAACAGTGGTCTGAATTTGACGGCGAGAAACGCGACCAATAGCGT
GAGCAGCCGTAAAACACGTCCCATTAATCTGCGCGACCTCTTTATAGCGC
CTCCCTTTGACGAGCTGGACGCCGTGGCATCTGACGGGAGCGGAGAGCCC
CGCCGGCTGACGAGCGCCCAGCTGAAGACTCTGCGGGAAACTGGCTTGCA
AAAGGATAAATATGGAAAGCCGAAGAAATTAACTTTGGAACAATTGGAAA
CAATACGTAAAAATGGCGAGTTCGATGTGCCCAGTCTTTATTTTCCTGGC
CAGGTGCACAAGTGGCGTCTGTCCCAAGTACTCCAAAAGGGCAAGCTGCG
GGCGCAGGACTCCTTTCTGAGCGATCTGGCCTTGGCTGCCCGGTTCGTGG
TGGTCACTGCCCGAGCTCGCATCTTCTCCCACTTCTTTTCGGTCGTGCAG
GCGATGCACGGCTTGCTGGAAGCGTTCACCAGACTTGCTGATATGGTCAT
CGGTGTGCCGGCTCTTTTGGGCCCACACCTGAACTATAAGATAAAGGAGG
AGCGCTGCCGATTTCTCATAG
BO11419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2519-PA | 3915 | CG2519-RA | 1..754 | 17..770 | 3770 | 100 | Plus |
| CG2519-PB | 3843 | CG2519-RB | 1..429 | 17..445 | 2145 | 100 | Plus |
| CG2519-PB | 3843 | CG2519-RB | 426..682 | 514..770 | 1285 | 100 | Plus |
| CG2519-PA | 3915 | CG2519-RA | 761..805 | 777..821 | 175 | 95.5 | Plus |
| CG2519-PB | 3843 | CG2519-RB | 689..733 | 777..821 | 175 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2519-RA | 5665 | CG2519-RA | 228..1033 | 16..821 | 3955 | 99.5 | Plus |
| CG2519-RC | 5863 | CG2519-RC | 498..927 | 16..445 | 2150 | 100 | Plus |
| CG2519-RB | 5593 | CG2519-RB | 228..657 | 16..445 | 2150 | 100 | Plus |
| CG2519-RC | 5863 | CG2519-RC | 920..1231 | 510..821 | 1470 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5544764..5545069 | 821..516 | 1440 | 98 | Minus |
| 3R | 32079331 | 3R | 5546456..5546676 | 236..16 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 5546193..5546401 | 444..236 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 5545671..5545743 | 516..444 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:51:46 has no hits.
BO11419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:07 Download gff for
BO11419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:44 Download gff for
BO11419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:38:57 Download gff for
BO11419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-RA | 221..1033 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:07 Download gff for
BO11419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-RA | 221..1033 | 9..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:07 Download gff for
BO11419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5545671..5545742 | 445..516 | 100 | <- | Minus |
| 3R | 5546193..5546400 | 237..444 | 100 | <- | Minus |
| 3R | 5546456..5546683 | 9..236 | 98 | | Minus |
| 3R | 5544764..5545068 | 517..821 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:38:57 Download gff for
BO11419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1370486..1370790 | 517..821 | 98 | <- | Minus |
| arm_3R | 1371393..1371464 | 445..516 | 100 | <- | Minus |
| arm_3R | 1371915..1372122 | 237..444 | 100 | <- | Minus |
| arm_3R | 1372178..1372405 | 9..236 | 98 | | Minus |
BO11419.complete Sequence
3946 bp assembled on 2008-01-17
GenBank Submission: FJ632084
> BO11419.complete
GAAGTTATCAGTCGACATGCCGTCGGTTCCAGCGCCGGCTGCTGTGCCAG
CCACTTTGTCGGTCAGCGCTTCCGGCACTCAGATGCTGCGCCCTCAGACT
CTGGCCGGCCCCGAGCGGGAGCCTATCGAGTTCAACATCAACCTGGTGGG
AGCTCCTCCCGAGGTGGAGCAGCTGGTGGAGCAGATCAAGAGCGTGGCCG
AGCAATTCCTCTACCACTGGAAGAGCTTTCCCATTGTTTTGCCTCAGGCG
CTGGCTAACAGTGGTCTGAATTTGACGGCGAGAAACGCGACCAATAGCGT
GAGCAGCCGTAAAACACGTCCCATTAATCTGCGCGACCTCTTTATAGCGC
CTCCCTTTGACGAGCTGGACGCCGTGGCATCTGACGGGAGCGGAGAGCCC
CGCCGGCTGACGAGCGCCCAGCTGAAGACTCTGCGGGAAACTGGCTTGCA
AAAGGATAAATATGGAAAGCCGAAGAAATTAACTTTGGAACAATTGGAAA
CAATACGTAAAAATGGCGAGTTCGATGTGCCCAGTCTTTATTTTCCTGGC
CAGGTGCACAAGTGGCGTCTGTCCCAAGTACTCCAAAAGGGCAAGCTGCG
GGCGCAGGACTCCTTTCTGAGCGATCTGGCCTTGGCTGCCCGGTTCGTGG
TGGTCACTGCCCGAGCTCGCATCTTCTCCCACTTCTTTTCGGTCGTGCAG
GCGATGCACGGCTTGCTGGAAGCGTTCACCAGACTTGCTGATATGGTCAT
CGGTGTGCCGGCTCTTTTGGCCCACAACCTGGACTATAAGATTAAGGAGG
AGCGCTGCCGATTTCTCATAGCCGAGTTGGTTTGTCGGCCCGAATACGAG
GATTGTTTACACGGCCTGTGTTCCTATGTCCGGAAGATGCTGCGTCGCGC
TACGATGGAAAAATTCGACTTCAACAGCTGCGAGGTCAGCCAGCCCGTAC
CCTATCTATTCCTCACGCCCAAAGGACAGGAGATCGACTTGCGGCTCTTC
TGCCGCGACATCATGCGCAAAGCACTTCCAATTCTAATTGGCATTCTGGA
GCGGGAGACGCGAGGCTGGTTTCTGCATTTCCGCGAGCGTTTGATTGCCG
AGCTGCGTGCCAAAAAGCTGAACGACAAGGAGATCGAGGAGGAGGTGAAC
GAAGCTGTCATGAAGGAGTATCTGCAACGCGTCTACAGCTCAATCATCTC
CAATGCAAAGCTGGGGGAGCTTGGCGCCGGAGTGCCGGAACTCCTGGTGC
AGCAGGCCCAGTCGGTGGTAATTATGTACAAGGCTGTTGACAAGGTGGAG
CAGAATATCAAGCGGACTCGCGAGGACCATCAGAAGTGTCTGGCCAATGA
CCATTCCGTGTTGTCGCGGGTTGCCCCCTGGCTGCGCTCCAAGCTGCGCC
ACGCCGAAGAGAATCGGCTCCACAAGAGCGCCTGGTCGGCCCACGAGGAA
GCGCTAAAAATGTGCACCCAACATAACCTGCATCAAACAGCATACTTCCT
GTCTCGTGACCTGACCTTCATGAAGGAGCGCGAGCCAGTGCTCCTTAAGG
AGCTGAAGAACGCCAAGACTCCCACGCGCAGCTTTCAATGGGCGTGTCGC
ATCTGGTCGCCACAGTCGTGGATCATCCGTCGCAACTTCCAGGGTCAGTC
TGACGTAATTCCCACTGTGATTAGCCAACATGCCACTAGCATAGTCACTC
CACGGTCGGATCCCAGCCAGCCGGTTTTTCTGGTGGAAAAGGAGATACTG
CGCACAACAAGCACGCGCTGGCCTTTCTGGCGCCTGCTAAACATGATCCA
GCGAATCTGGTGCTGGTCCTGGAACATGATGTTCCTGCTTGGCATACTAG
TTCCGTGGTGCAGTCCCCTCGGACTGCGCGCCCTCTGCTGTGTGAAGCCT
TTTATGCCCGACCTTGAGCTATCGCAAATCAATGGCACACTGTTCCCAAG
GAAGACGAGCATAACTCAGACTCTGGCGTCACGTCTAATCGAGTTGTGGC
GACATATATCGAAGTCACGTACGCACTTTGAGACAGAACCAGATACGGGC
TTTATTGGAAAGGGACTGACACGCAATCTGAATCGAACTTGGAACTATTT
TGTGAAAGGATTCCTAGGTACGATCGTCATTTTATTCGCCTTCCCCCTTA
TCTGTTTGGCCGCTAGCTTGCTAAGCATTTGTCTGGCTGTGACTGCGCCC
CTATGGATTCCCGTGTTCGTGCTACTACTCCACATCTACATGATCCTCAT
ATATGATTTGGATGCACCTGATAATACGAAGAATCGATACTGCATCCTAT
TGGAAGCCATAGTTTGGAATCTTCTCATACAGGGATTGCTCCAGCCGGTG
GCGGCGATTCTAATGGCCACGCTGGTCTGTCCATTGGCAGCAGGAGTCGT
GTTTATAGTTGGGGTCATCCGGTATTCCCTACGGCTGGTGTGGGACTCTC
TTACCTACCATTTGTTTATCAAGAAGTGTGGACGTGTACCGGCTTCGGAT
AGCATTGCTGTAAAACGAATTGCTGGACCTGGACTGGCATTAGACTATTA
TTTCATAATCAGACCGGAGCAGGCATTGGCTGCACTGGAGGCTAAAATGG
AACTGGACGAGTTGCAGGCCTACCAGCATGCCACGGAGCGAGTGGTGTTG
CAGCCACAGCAGGATTTCCTCCAGTTTGTCGAGGCTTGCTTTGGGCCGTT
TTCAGCCCAAATCAGTAAAACTGGACCGTACTTATCGCTGGACCGGGAGG
CGCAGGATCTGATGAGTACGCTACACGAGAAGTTAGAGAAGCGACGAAGG
GAGTTGCAGACGGCGCTGACCACCCAAGTCAAATCTCGCATAAAGTTAAA
TACCAAAGAATTAAAGATTGCTATACAACTGGCCGCCCATATTTTAGAGA
AATATTATCCGTCTCATGTCATCGGCAGACTGTCCATTAGCGAAGAAGAA
TTTTGGGATAATAAAGGTCTCACGGTAAACGACTGGCCGGGACTGGCTGG
TCTTATATACACCGACATATTTAGTCTAGATTTTCTAACGCCATTGACTG
AACACGATACACATTTTAAACTAGAACCACATGCCTCGCTCGACCTTATG
CGTTATACGGAGATGGTGAAGAATGCAAACGATGTGATTGGCTCCAAGGG
CCTGGATCTGCTCGGCAATGTGTACGCCCCGCGTGGCAACGTTCAAGTGC
ATCTGCCCTTCCTCGAAGTGACTGCATTCAATCCACGCTCCCGCATAACG
CTCACCTTCCGCAAGCCCGAGAAAAGGGATATGTCTGTGGGATTGACCAC
ACCGAGGGTGCGTGCCCACCGTGCCCAGCATGTGCCGAAGACTTTACAAG
AAGGCCAGAAGTCCTGGCGACCGTGGAAGCAGCAAAGCGGAGAGAAGAGC
GTTACGGAAAAGCTGCTCATCCCATTGCCAGTGCCCCATCCCGTTCACAT
TGCTATTGCCATTTACAATCGCGACACCGAACAGCCCATCCCCTTGGACT
CGGAGCTGGTCTGGGAAATTCTTAAATCGATAGAGGACTGCCAAGGCGGC
GATGCCATGGCTGTCCAGGCTGTGGCGCGTTATCGGGGAGCGGTCATTGA
ATCGAGCAATGACTCGCTGGCCAGCAGCAGCAGCATTGGCAGTACTCGTG
ACTCGGGATCAGGTTCTGTGTCGGGCTCGGCACTGGGCAACGGTACAGAA
ACCCTTCCATGCGGCAATCGAGAGGTCTGCACCCAGGTTAAGGTGGACAC
CGAGCCGGCTGCCAGCTCCTCTGGTTTCCATTGGACTCTAAGCAACTGGG
GCGCAGCGCAAACGGCACGACGTCGAACCAACTCTAATGTGCGCGTGGAC
TTGGCCAGTCCCGAAGATATATCCTTGGATACGGATAGTTCGCGTGCCGT
TTTCAACAACGCGTACGGCACAACTGTCGCAAGCTTTCTAGACCAT
BO11419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2519-RA | 3915 | CG2519-PA | 1..3912 | 17..3928 | 19560 | 100 | Plus |
| CG2519-RC | 3843 | CG2519-PC | 422..3840 | 510..3928 | 17080 | 100 | Plus |
| CG2519-RB | 3843 | CG2519-PB | 422..3840 | 510..3928 | 17080 | 100 | Plus |
| CG2519-RC | 3843 | CG2519-PC | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2519-RA | 5665 | CG2519-RA | 228..4140 | 16..3928 | 19565 | 100 | Plus |
| CG2519-RC | 5863 | CG2519-RC | 920..4338 | 510..3928 | 17080 | 100 | Plus |
| CG2519-RB | 5593 | CG2519-RB | 650..4068 | 510..3928 | 17080 | 100 | Plus |
| CG2519-RC | 5863 | CG2519-RC | 498..927 | 16..445 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5543365..5544576 | 2049..838 | 6060 | 100 | Minus |
| 3R | 32079331 | 3R | 5542418..5542878 | 2866..2406 | 2305 | 100 | Minus |
| 3R | 32079331 | 3R | 5542936..5543296 | 2408..2048 | 1805 | 100 | Minus |
| 3R | 32079331 | 3R | 5544747..5545069 | 838..516 | 1615 | 100 | Minus |
| 3R | 32079331 | 3R | 5541891..5542202 | 3277..2966 | 1560 | 100 | Minus |
| 3R | 32079331 | 3R | 5541553..5541838 | 3560..3275 | 1430 | 100 | Minus |
| 3R | 32079331 | 3R | 5546456..5546676 | 236..16 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 5546193..5546401 | 444..236 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 5541035..5541240 | 3928..3723 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 5541327..5541494 | 3726..3559 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 5542267..5542369 | 2966..2864 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 5545671..5545743 | 516..444 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:43:30 has no hits.
BO11419.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:32 Download gff for
BO11419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-RA | 1..3915 | 17..3932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:56 Download gff for
BO11419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-RA | 222..4133 | 17..3930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:16 Download gff for
BO11419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-RA | 229..4140 | 17..3930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:33 Download gff for
BO11419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-RA | 214..4144 | 9..3937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:01 Download gff for
BO11419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2519-RA | 229..4140 | 17..3930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:01 Download gff for
BO11419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5542268..5542366 | 2867..2965 | 100 | <- | Minus |
| 3R | 5541033..5541238 | 3725..3930 | 99 | <- | Minus |
| 3R | 5541329..5541493 | 3560..3724 | 100 | <- | Minus |
| 3R | 5541554..5541836 | 3277..3559 | 100 | <- | Minus |
| 3R | 5541892..5542202 | 2966..3276 | 100 | <- | Minus |
| 3R | 5542418..5542875 | 2409..2866 | 100 | <- | Minus |
| 3R | 5542936..5543295 | 2049..2408 | 100 | <- | Minus |
| 3R | 5543366..5544575 | 839..2048 | 100 | <- | Minus |
| 3R | 5544747..5545068 | 517..838 | 100 | <- | Minus |
| 3R | 5545671..5545742 | 445..516 | 100 | <- | Minus |
| 3R | 5546193..5546400 | 237..444 | 100 | <- | Minus |
| 3R | 5546456..5546675 | 17..236 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:16 Download gff for
BO11419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1367990..1368088 | 2867..2965 | 100 | <- | Minus |
| arm_3R | 1366755..1366960 | 3725..3930 | 99 | <- | Minus |
| arm_3R | 1367051..1367215 | 3560..3724 | 100 | <- | Minus |
| arm_3R | 1367276..1367558 | 3277..3559 | 100 | <- | Minus |
| arm_3R | 1367614..1367924 | 2966..3276 | 100 | <- | Minus |
| arm_3R | 1368140..1368597 | 2409..2866 | 100 | <- | Minus |
| arm_3R | 1368658..1369017 | 2049..2408 | 100 | <- | Minus |
| arm_3R | 1369088..1370297 | 839..2048 | 100 | <- | Minus |
| arm_3R | 1370469..1370790 | 517..838 | 100 | <- | Minus |
| arm_3R | 1371393..1371464 | 445..516 | 100 | <- | Minus |
| arm_3R | 1371915..1372122 | 237..444 | 100 | <- | Minus |
| arm_3R | 1372178..1372397 | 17..236 | 100 | | Minus |
BO11419.pep Sequence
Translation from 16 to 3946
> BO11419.pep
MPSVPAPAAVPATLSVSASGTQMLRPQTLAGPEREPIEFNINLVGAPPEV
EQLVEQIKSVAEQFLYHWKSFPIVLPQALANSGLNLTARNATNSVSSRKT
RPINLRDLFIAPPFDELDAVASDGSGEPRRLTSAQLKTLRETGLQKDKYG
KPKKLTLEQLETIRKNGEFDVPSLYFPGQVHKWRLSQVLQKGKLRAQDSF
LSDLALAARFVVVTARARIFSHFFSVVQAMHGLLEAFTRLADMVIGVPAL
LAHNLDYKIKEERCRFLIAELVCRPEYEDCLHGLCSYVRKMLRRATMEKF
DFNSCEVSQPVPYLFLTPKGQEIDLRLFCRDIMRKALPILIGILERETRG
WFLHFRERLIAELRAKKLNDKEIEEEVNEAVMKEYLQRVYSSIISNAKLG
ELGAGVPELLVQQAQSVVIMYKAVDKVEQNIKRTREDHQKCLANDHSVLS
RVAPWLRSKLRHAEENRLHKSAWSAHEEALKMCTQHNLHQTAYFLSRDLT
FMKEREPVLLKELKNAKTPTRSFQWACRIWSPQSWIIRRNFQGQSDVIPT
VISQHATSIVTPRSDPSQPVFLVEKEILRTTSTRWPFWRLLNMIQRIWCW
SWNMMFLLGILVPWCSPLGLRALCCVKPFMPDLELSQINGTLFPRKTSIT
QTLASRLIELWRHISKSRTHFETEPDTGFIGKGLTRNLNRTWNYFVKGFL
GTIVILFAFPLICLAASLLSICLAVTAPLWIPVFVLLLHIYMILIYDLDA
PDNTKNRYCILLEAIVWNLLIQGLLQPVAAILMATLVCPLAAGVVFIVGV
IRYSLRLVWDSLTYHLFIKKCGRVPASDSIAVKRIAGPGLALDYYFIIRP
EQALAALEAKMELDELQAYQHATERVVLQPQQDFLQFVEACFGPFSAQIS
KTGPYLSLDREAQDLMSTLHEKLEKRRRELQTALTTQVKSRIKLNTKELK
IAIQLAAHILEKYYPSHVIGRLSISEEEFWDNKGLTVNDWPGLAGLIYTD
IFSLDFLTPLTEHDTHFKLEPHASLDLMRYTEMVKNANDVIGSKGLDLLG
NVYAPRGNVQVHLPFLEVTAFNPRSRITLTFRKPEKRDMSVGLTTPRVRA
HRAQHVPKTLQEGQKSWRPWKQQSGEKSVTEKLLIPLPVPHPVHIAIAIY
NRDTEQPIPLDSELVWEILKSIEDCQGGDAMAVQAVARYRGAVIESSNDS
LASSSSIGSTRDSGSGSVSGSALGNGTETLPCGNREVCTQVKVDTEPAAS
SSGFHWTLSNWGAAQTARRRTNSNVRVDLASPEDISLDTDSSRAVFNNAY
GTTVASFLDH
BO11419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2519-PA | 1304 | CG2519-PA | 1..1304 | 1..1304 | 6753 | 100 | Plus |
| CG2519-PC | 1280 | CG2519-PC | 1..1280 | 1..1304 | 6580 | 97.9 | Plus |
| CG2519-PB | 1280 | CG2519-PB | 1..1280 | 1..1304 | 6580 | 97.9 | Plus |
