Clone Sequence Records
BO11421.3prime Sequence
815 bp (731 high quality bases) assembled on 2006-04-19
> BO11421.3prime
ATGGTCTAGAAAGCTTGCGTAGACCCTGGGCAGGATGTAGCTGCGCACCT
GGGTGCTGTAGCGCTGCCAGGAGGAGTGATAGCGCGCCTGATTCCGGGCG
TTCGCTCGGGTGGCGCGATGGAGCAGGAGCAGGATGATCAGACTAAGACC
CAGAACTGGTGGCCAGGCCGGACGCAGGGCCATGGGAGCAGCCAGGGCCA
GCAGGGCCACGATGTCGCCTAGATAGTTGGGCTGGCGTACCCATCCCCAC
ATTCCGCTGAGCAGCAGACGGCTTCCCTGATACGTGTGAATAGTTTCGAT
GTTGGCGAAGATCGGACTTTGCGAGTTCAATCGGTATTTGTACTTGTAGG
CGCAACTGAATCGCTTGACCAGCAATCCCAGAGACAGCAGAGCAGCCACT
GCCAGCGGAGCATACCAGCAGGAGATGGGTACACGCTGCTCGTAGAAATA
CTTGGTGACCGCCGTCAGCAGATATGGAGTGGCTGCGTAGCGCAGGAGCA
GCAAACAGCCGTAGCCTTCGTGTTGCAGCTCAAAGGATGAGCTCAAGTGG
TGCTCGAAAATAATGGCGTCCAATACGTAGAACAGCAAGCAGCTGGCCGA
GAACAGGGTGGCAGGATCATAATTTACATTGTTCCAGTAGTATTTGGCCT
GGTAGAGATAGCCCTCCTGTTCACCCAGCTGCGGCTTCTGGGGCCACACG
AGCGTCTGGTAGATGTAGCAGGTGGCATAGATCAAGGTGGGTCACCAGGG
AGAAACGGTACTGAAACTGTTTCCAATCCACGCGTCCTAACCACTTGGGA
TTGAGCTGTCTGCCC
BO11421.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17952-PB | 2151 | LBR-RB | 1427..2148 | 740..19 | 3610 | 100 | Minus |
| CG17952-PA | 2151 | LBR-RA | 1427..2148 | 740..19 | 3610 | 100 | Minus |
| CG17952-PC | 2226 | LBR-RC | 1502..2223 | 740..19 | 3610 | 100 | Minus |
| CG17952-PB | 2151 | LBR-RB | 1353..1428 | 815..740 | 330 | 97.3 | Minus |
| CG17952-PA | 2151 | LBR-RA | 1353..1428 | 815..740 | 330 | 97.3 | Minus |
| CG17952-PC | 2226 | LBR-RC | 1428..1503 | 815..740 | 330 | 97.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LBR-RC | 2792 | CG17952-RC | 1596..2391 | 815..19 | 3930 | 99.6 | Minus |
| LBR-RA | 2701 | CG17952-RA | 1505..2300 | 815..19 | 3930 | 99.6 | Minus |
| LBR-RB | 2719 | CG17952-RB | 1523..2318 | 815..19 | 3930 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21722859..21723654 | 815..19 | 3905 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-03 17:32:47 has no hits.
BO11421.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:10 Download gff for
BO11421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-PA | 1353..2151 | 15..815 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:48 Download gff for
BO11421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17952-PC | 1428..2226 | 15..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:35:56 Download gff for
BO11421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RB | 1523..2323 | 13..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:02:39 Download gff for
BO11421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RB | 1523..2323 | 13..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:02:39 Download gff for
BO11421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21722859..21723659 | 13..815 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:35:56 Download gff for
BO11421.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17610364..17611164 | 13..815 | 99 | | Minus |
BO11421.5prime Sequence
859 bp (708 high quality bases) assembled on 2006-04-19
> BO11421.5prime
GAAGTTATCAGTCGACATGGATCGACGCCTGAGACGCCCGCGTCGCACGG
AAGACGTGTCCAGCGGTCCACTTCTGGCCCAGTCCAAGCAGCCCAGCCTC
CTGCCGGTGACCCGACGTACGGGCTCCGTGACAGCTGCGGGTGCCACCGC
CACCGCCACCGCCACCGCTGGTCCCGCCACCCGGACACGTGCCTCCCCGT
CACGCAACAAGGTCGTCGCACCGCCCTCGCCCGATCTTGGCCCGCGCACC
CGTCGCTCCAGCCGGCCGAGGTCGTCGGTGGGTCCGCTGACCGGATCGGG
ATCTGGTTCCTCGCTGCCCATCAAGGCCGCCATCAAGGCACGCACACCCA
TCCCAGAGGTTTCCGAGGTATCATCGCCTATTCGTTTGTCAACCAGCAAT
CTGCCCATGACATTGACCACCAACACATCCAGCGGCGCACCGAACAAAGC
ATTTAACACAAGCTCCGTGAACAGCGGCAACAGCTTCAGCCGTACCACTA
CCAGCAGCACCACCACAACCACGGAGCGCATCGAGATCCGTGCCGAGGGA
GACGGCGAGGTGGACACGGATTCCATTCGCAAACGCATAACCGAACGACT
GCGCAGATCGGTGTCGAAGACAATCTCAAATCTAGCTGGAACACCAGTGA
CAAACACCGAAGAGGGCAGTCGTTATAGTAGGAGTGTGTCCCGATCCGTC
TACGACGATGAGAAGTCCTCCAAGCGTAGTTACTCTACGGGTGAAGAGGA
TATTGATGAGGAGGATGAATTGGAGGAGGATCAGTTCCGTAGTTTCAATG
TAACCCGTAAATCGGCCACACCGGCGGAAATATCCTGGCGTCAGTTGAAG
GCTCCTAGA
BO11421.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17952-PC | 2226 | LBR-RC | 75..918 | 16..859 | 4195 | 99.8 | Plus |
| CG17952-PB | 2151 | LBR-RB | 1..843 | 17..859 | 4190 | 99.8 | Plus |
| CG17952-PA | 2151 | LBR-RA | 1..843 | 17..859 | 4190 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LBR-RC | 2792 | CG17952-RC | 243..1086 | 16..859 | 4205 | 99.9 | Plus |
| LBR-RA | 2701 | CG17952-RA | 152..995 | 16..859 | 4205 | 99.9 | Plus |
| LBR-RB | 2719 | CG17952-RB | 170..1013 | 16..859 | 4205 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21721856..21722349 | 366..859 | 2455 | 99.8 | Plus |
| 2R | 25286936 | 2R | 21720976..21721329 | 16..369 | 1770 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7368..7423 | 470..524 | 124 | 71.4 | Plus |
BO11421.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:11 Download gff for
BO11421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-PC | 67..917 | 8..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:49 Download gff for
BO11421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17952-PC | 67..917 | 8..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:00:39 Download gff for
BO11421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RB | 162..1012 | 8..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:19:48 Download gff for
BO11421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RB | 162..1012 | 8..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:48 Download gff for
BO11421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21720968..21721327 | 8..367 | 98 | -> | Plus |
| 2R | 21721858..21722348 | 368..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:00:39 Download gff for
BO11421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17608473..17608832 | 8..367 | 98 | -> | Plus |
| arm_2R | 17609363..17609853 | 368..858 | 99 | | Plus |
BO11421.complete Sequence
2182 bp assembled on 2008-01-17
GenBank Submission: FJ632085
> BO11421.complete
GAAGTTATCAGTCGACATGGATCGACGCCTGAGACGCCCGCGTCGCACGG
AAGACGTGTCCAGCGGTCCACTTCTGGCCCAGTCCAAGCAGCCCAGCCTC
CTGCCGGTGACCCGACGTACGGGCTCCGTGACAGCTGCGGGTGCCACCGC
CACCGCCACCGCCACCGCTGGTCCCGCCACCCGGACACGTGCCTCCCCGT
CACGCAACAAGGTCGTCGCACCGCCCTCGCCCGATCTTGGCCCGCGCACC
CGTCGCTCCAGCCGGCCGAGGTCGTCGGTGGGTCCGCTGACCGGATCGGG
ATCTGGTTCCTCGCTGCCCATCAAGGCCGCCATCAAGGCACGCACACCCA
TCCCAGAGGTTTCCGAGGTATCATCGCCTATTCGTTTGTCAACCAGCAAT
CTGCCCATGACATTGACCACCAACACATCCAGCGGCGCACCGAACAAAGC
ATTTAACACAAGCTCCGTGAACAGCGGCAACAGCTTCAGCCGTACCACTA
CCAGCAGCACCACCACAACCACGGAGCGCATCGAGATCCGTGCCGAGGGA
GACGGCGAGGTGGACACGGATTCCATTCGCAAACGCATAACCGAACGACT
GCGCAGATCGGTGTCGAAGACAATCTCAAATCTAGCTGGAACACCAGTGA
CAAACACCGAAGAGGGCAGTCGTTATAGTAGGAGTGTGTCCCGATCCGTC
TACGACGATGAGAAGTCCTCCAAGCGTAGTTACTCTACGGGTGAAGAGGA
TATTGATGAGGAGGATGAATTGGAGGAGGATCAGTTCCGTAGTTTCAATG
TAACCCGTAAATCGGCCACACCGGCGGAAATATCCTGCCGTCAGTTGAAG
GCTCCTAGAGAATTTGGCGGTTGGCTAGGCGCCTTCCTGTTCCTGCTACT
TCTGCCCACCGCCGTCTACTATTTGACATGGAGCTGTACGGCCAGAAACG
CCTGTCAGTTTAAGCACCTCAATCTGGGTATACTACTGGATGTTAACTAC
CTAACGCGCCAGGTGTTCCAGCCACGAGTGGTGGGTGCCTTTGCCGCCTA
TCAGGTGGTGGTATTTCTGCTGGTGGCACTGCTACCAGGACGAAGGGTTC
ATCTCACCCGCGAGACCTACAAGTTTAATTGTCTAGCAGTTTCGCTTACG
CTTTTGATTGCCAGTGGAGTGGCCGAGTATCTGAAGTATCCAGTGGTCAC
CTTCGTTCTGCGTCACTATCTGCGTTTCTGCATCTTTGGACTCGTTGGCG
CCTTTGTGGCAGCTGCTTGGAGCTACTGGCTGGTGGACACCGCCAAGTAC
AATGTGCTGCGCCAAACGCTGACCAATGATTATGGCAGGACTGGCAGCTT
TGTGGTGGACTTCGCGCTGGGCAGACAGCTCAATCCCAAGTGGCTAGGAC
GCGTGGATTGGAAACAGTTTCAGTACCGTCTCTCCCTGGTGACCACCTTG
ATCTATGCCACCTGCTACATCTACCAGACGCTCGTGTGGCCCCAGAAGCC
GCAGCTGGGTGAACAGGAGGGCTATCTCTACCAGGCCAAATACTACTGGA
ACAATGTAAATTATGATCCTGCCACCCTGTTCTCGGCCAGCTGCTTGCTG
TTCTACGTATTGGACGCCATTATTTTCGAGCACCACTTGAGCTCATCCTT
TGAGCTGCAACACGAAGGCTACGGCTGTTTGCTGCTCCTGCGCTACGCAG
CCACTCCATATCTGCTGACGGCGGTCACCAAGTATTTCTACGAGCAGCGT
GTACCCATCTCCTGCTGGTATGCTCCGCTGGCAGTGGCTGCTCTGCTGTC
TCTGGGATTGCTGGTCAAGCGATTCAGTTGCGCCTACAAGTACAAATACC
GATTGAACTCGCAAAGTCCGATCTTCGCCAACATCGAAACTATTCACACG
TATCAGGGAAGCCGTCTGCTGCTCAGCGGAATGTGGGGATGGGTACGCCA
GCCCAACTATCTAGGCGACATCGTGGCCCTGCTGGCCCTGGCTGCTCCCA
TGGCCCTGCGTCCGGCCTGGCCACCAGTTCTGGGTCTTAGTCTGATCATC
CTGCTCCTGCTCCATCGCGCCACCCGAGCGAACGCCCGGAATCAGGCGCG
CTATCACTCCTCCTGGCAGCGCTACAGCACCCAGGTGCGCAGCTACATCC
TGCCCAGGGTCTACGCAAGCTTTCTAGACCAT
BO11421.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LBR-RC | 2226 | CG17952-PC | 75..2223 | 16..2164 | 10745 | 100 | Plus |
| LBR-RA | 2151 | CG17952-PA | 1..2148 | 17..2164 | 10740 | 100 | Plus |
| LBR-RB | 2151 | CG17952-PB | 1..2148 | 17..2164 | 10740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LBR-RC | 2792 | CG17952-RC | 243..2391 | 16..2164 | 10745 | 100 | Plus |
| LBR-RA | 2701 | CG17952-RA | 152..2300 | 16..2164 | 10745 | 100 | Plus |
| LBR-RB | 2719 | CG17952-RB | 170..2318 | 16..2164 | 10745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21721856..21723654 | 366..2164 | 8995 | 100 | Plus |
| 2R | 25286936 | 2R | 21720976..21721329 | 16..369 | 1770 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7368..7423 | 470..524 | 124 | 71.4 | Plus |
BO11421.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:35 Download gff for
BO11421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RC | 67..2226 | 8..2168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:26 Download gff for
BO11421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RC | 221..2368 | 17..2166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:30 Download gff for
BO11421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RB | 171..2318 | 17..2166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:35 Download gff for
BO11421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RC | 212..2373 | 8..2170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:16 Download gff for
BO11421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LBR-RB | 171..2318 | 17..2166 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:16 Download gff for
BO11421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21720977..21721327 | 17..367 | 100 | -> | Plus |
| 2R | 21721858..21723654 | 368..2166 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:30 Download gff for
BO11421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17608482..17608832 | 17..367 | 100 | -> | Plus |
| arm_2R | 17609363..17611159 | 368..2166 | 99 | | Plus |
BO11421.pep Sequence
Translation from 16 to 2182
> BO11421.pep
MDRRLRRPRRTEDVSSGPLLAQSKQPSLLPVTRRTGSVTAAGATATATAT
AGPATRTRASPSRNKVVAPPSPDLGPRTRRSSRPRSSVGPLTGSGSGSSL
PIKAAIKARTPIPEVSEVSSPIRLSTSNLPMTLTTNTSSGAPNKAFNTSS
VNSGNSFSRTTTSSTTTTTERIEIRAEGDGEVDTDSIRKRITERLRRSVS
KTISNLAGTPVTNTEEGSRYSRSVSRSVYDDEKSSKRSYSTGEEDIDEED
ELEEDQFRSFNVTRKSATPAEISCRQLKAPREFGGWLGAFLFLLLLPTAV
YYLTWSCTARNACQFKHLNLGILLDVNYLTRQVFQPRVVGAFAAYQVVVF
LLVALLPGRRVHLTRETYKFNCLAVSLTLLIASGVAEYLKYPVVTFVLRH
YLRFCIFGLVGAFVAAAWSYWLVDTAKYNVLRQTLTNDYGRTGSFVVDFA
LGRQLNPKWLGRVDWKQFQYRLSLVTTLIYATCYIYQTLVWPQKPQLGEQ
EGYLYQAKYYWNNVNYDPATLFSASCLLFYVLDAIIFEHHLSSSFELQHE
GYGCLLLLRYAATPYLLTAVTKYFYEQRVPISCWYAPLAVAALLSLGLLV
KRFSCAYKYKYRLNSQSPIFANIETIHTYQGSRLLLSGMWGWVRQPNYLG
DIVALLALAAPMALRPAWPPVLGLSLIILLLLHRATRANARNQARYHSSW
QRYSTQVRSYILPRVYASFLDH
BO11421.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LBR-PC | 741 | CG17952-PC | 26..741 | 1..716 | 3697 | 100 | Plus |
| LBR-PA | 716 | CG17952-PA | 1..716 | 1..716 | 3697 | 100 | Plus |
| LBR-PB | 716 | CG17952-PB | 1..716 | 1..716 | 3697 | 100 | Plus |
