Clone Sequence Records
BO11427.3prime Sequence
856 bp (778 high quality bases) assembled on 2006-04-19
> BO11427.3prime
ATGGTCTAGAAAGCTTGCCTGCGGCTTCTGGGTCTTTGGTGGTGCTTGGT
GCTGCTGCTGCTGCTGCTGGGTCTCGTACCGCTGGCGCAGGGCGGTCAGG
GCACTCAGCAGCCGGCTGTTGGCCGCATCCAGTGCCGCAATCTGCTGGCC
CTGCTCCTCGATCACGCGCTGCTTGTGCGACAGCGCCAGCGACATCTTCA
GCTGCTCGCGTCGCAGCTCCTCCTCCATGGTTATGAGTCTGTCGATGATG
CTGCGCATAGTGGACTCCGACTGCAGGCTAAGATTGTTCGATCCATTGCT
GCCCGCCGGACGCTGCAGGCCAAACAGCTCGTCGCTGGAGTCGCGAAGCT
CGGCCTCATCCCGGTCCAGCGTGTGGCAGAGCGTGTCCAGCGTCTGTTGC
AGCAGCTGAATCTCTCCGTTCTGGTCATAGCTCTTGCCCAGTCCCTGCTC
AGAACCGGCTCCTCCTCCGCCGCTGCCGCCACTGCTGCGCAACTGCCTGC
GTCGCTTGCCCTCCTGCAATTGGTTGCAGTGTCCCTCTGTATCCGTGCTG
CTGTCGGAGAGCGTGCGCGCCGAGTCCAAGCTCAGGCGCCTCTGAGCCGC
TGATGTGGCCGATCCCACGCTGCCCGCCACACTGCCGGCATACTGCTTGT
GTTCCTGATCCCGTTCCCTTTGCTGCTGCTGCTGCATCGGATTCTGCTGC
TGCTGGTGGGGATGTTGATGGTGTCCCGCGGCACTGGAAGTGGACAAGCC
ATACCCCACATTTCCACTGCTGCCGCCGTAGCCACTGCCGTAGACATCCT
CGCGCTTCAGCGGCCCATTCAGCCGCCCGTAGGCGGATGAGCCGCCGCTC
CTGCCA
BO11427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32560-PA | 4671 | CG32560-RA | 3831..4668 | 856..19 | 4140 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42684-RG | 6028 | CG42684-RG | 4755..5592 | 856..19 | 4160 | 99.8 | Minus |
| CG42684-RE | 6100 | CG42684-RE | 4827..5664 | 856..19 | 4160 | 99.8 | Minus |
| CG42684-RD | 5390 | CG42270-RD | 4117..4954 | 856..19 | 4160 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17750164..17750487 | 856..533 | 1590 | 99.4 | Minus |
| X | 23542271 | X | 17750553..17750848 | 534..239 | 1480 | 100 | Minus |
| X | 23542271 | X | 17751027..17751249 | 241..19 | 1115 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 562..729 | 329..492 | 119 | 60.8 | Plus |
BO11427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:18 Download gff for
BO11427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32560-PA | 3832..4671 | 16..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:29:59 Download gff for
BO11427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32560-PA | 3832..4671 | 16..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:12 Download gff for
BO11427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42684-RD | 4089..4930 | 13..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:33 Download gff for
BO11427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42684-RD | 4118..4959 | 13..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:33 Download gff for
BO11427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17750165..17750486 | 534..855 | 99 | -> | Minus |
| X | 17750554..17750848 | 239..533 | 100 | -> | Minus |
| X | 17751030..17751254 | 13..238 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:12 Download gff for
BO11427.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17644198..17644519 | 534..855 | 99 | -> | Minus |
| arm_X | 17644587..17644881 | 239..533 | 100 | -> | Minus |
| arm_X | 17645063..17645287 | 13..238 | 98 | | Minus |
BO11427.5prime Sequence
857 bp (720 high quality bases) assembled on 2006-04-19
> BO11427.5prime
GAAGTTATCAGTCGACATGGGACGTCGAACGTATTTAAGCCGGTCCTCAA
CGATTTCCTACCCCAGCAGAATCGAAGGATGGCTGGATGTCTGCGAAACC
GAGGGAGAACTAACTCGCCTGATCAAGACGCTTCCCTGGGGTCCTTTATA
CTGCGTGCTGCAACAGGACGATCAGACATTCACCGCCTACTGCAGCGAGG
AGATTTCGCTAGGCGATGTTTGCTACGAGGACATTCCAAGGGTTCGGTTG
GACCGAGTTCGTCGTCCTGCGAAGGCTTTGTGGGACGGACCGCCGACGTT
GGTCGAGGAAAACGAGGATTCAGATTCGTGTGTTGGGGGCAGCGGCGGCA
TGAGTGGCATCAACGACATCGTCCTGAATACGACGCTCTACAGTGAACTA
GATACGTCCTATGAGAAGGCGTGCCGCCGTGGATCAGCGCCCACCACGCC
CATTTTGGGCAGCAAACAGCACCAGACGGAGCACAATGCCACCTCGCGTT
TCACCAACTTCTTTTCCAAGAAATCCAATCCTTTGAAGCGGACCAAGTCG
GTGACCAAGCTGGAGCGGACCAAGCGCGGATCCGGCGGACTGAGGGGCTC
CCGCTCGCACGAGAGTCTGCTGTCCAGTCACGCCGTCATGTCCACCATAG
ATCTCTCGTGCACTGGGGCGGTGGGCGTGGCGCCCGTGCATCAGTCGGTT
CTGGGACGTCGTCACTGTTTCCAGGTACGGGGCGGGCCTCGTGGCGAGCG
GTACTACTCATGCGGATCGCGCCAGGAGCGCGACCTTTGAATCTACTCGC
TGCGCAAGTCGATCGCTCGGAATGCAGAGCACACGCGTCGCACGGACAAC
TCGCTGA
BO11427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32560-PA | 4671 | CG32560-RA | 1..841 | 17..857 | 4155 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42684-RH | 6022 | CG42684-RH | 898..1738 | 17..857 | 4175 | 99.8 | Plus |
| CG42684-RB | 6323 | CG42270-RB | 898..1738 | 17..857 | 4175 | 99.8 | Plus |
| CG42684-RG | 6028 | CG42684-RG | 1116..1765 | 208..857 | 3220 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17746965..17747174 | 648..857 | 1020 | 99 | Plus |
| X | 23542271 | X | 17721422..17721615 | 208..401 | 970 | 100 | Plus |
| X | 23542271 | X | 17746771..17746898 | 523..650 | 640 | 100 | Plus |
| X | 23542271 | X | 17746569..17746691 | 400..522 | 615 | 100 | Plus |
| X | 23542271 | X | 17720586..17720699 | 95..208 | 570 | 100 | Plus |
| X | 23542271 | X | 17711041..17711119 | 17..95 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:08:44 has no hits.
BO11427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:19 Download gff for
BO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32560-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:01 Download gff for
BO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32560-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:55:55 Download gff for
BO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42684-RB | 892..1737 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:41 Download gff for
BO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42684-RB | 892..1737 | 9..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:41 Download gff for
BO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17711035..17711119 | 9..95 | 95 | -> | Plus |
| X | 17720587..17720699 | 96..208 | 100 | -> | Plus |
| X | 17721423..17721615 | 209..401 | 100 | -> | Plus |
| X | 17746571..17746691 | 402..522 | 100 | -> | Plus |
| X | 17746771..17746898 | 523..650 | 100 | -> | Plus |
| X | 17746968..17747173 | 651..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:55:55 Download gff for
BO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17605068..17605152 | 9..95 | 95 | -> | Plus |
| arm_X | 17614620..17614732 | 96..208 | 100 | -> | Plus |
| arm_X | 17615456..17615648 | 209..401 | 100 | -> | Plus |
| arm_X | 17640604..17640724 | 402..522 | 100 | -> | Plus |
| arm_X | 17640804..17640931 | 523..650 | 100 | -> | Plus |
| arm_X | 17641001..17641206 | 651..856 | 99 | | Plus |
BO11427.complete Sequence
4702 bp assembled on 2008-11-10
GenBank Submission: KX796290
> BO11427.complete
GAAGTTATCAGTCGACATGGGACGTCGAACGTATTTAAGCCGGTCCTCAA
CGATTTCCTACCCCAGCAGAATCGAAGGATGGCTGGATGTCTGCGAAACC
GAGGGAGAACTAACTCGCCTGATCAAGACGCTTCCCTGGGGTCCTTTATA
CTGCGTGCTGCAACAGGACGATCAGACATTCACCGCCTACTGCAGCGAGG
AGATTTCGCTAGGCGATGTTTGCTACGAGGACATTCCAAGGGTTCGGTTG
GACCGAGTTCGTCGTCCTGCGAAGGCTTTGTGGGACGGACCGCCGACGTT
GGTCGAGGAAAACGAGGATTCAGATTCGTGTGTTGGGGGCAGCGGCGGCA
TGAGTGGCATCAACGACATCGTCCTGAATACGACGCTCTACAGTGAACTA
GATACGTCCTATGAGAAGGCGTGCCGCCGTGGATCAGCGCCCACCACGCC
CATTTTGGGCAGCAAACAGCACCAGACGGAGCACAATGCCACCTCGCGTT
TCACCAACTTCTTTTCCAAGAAATCCAATCCTTTGAAGCGGACCAAGTCG
GTGACCAAGCTGGAGCGGACCAAGCGCGGATCCGGCGGACTGAGGGGCTC
CCGCTCGCACGAGAGTCTGCTGTCCAGTCACGCCGTCATGTCCACCATAG
ATCTCTCGTGCACTGGGGCGGTGGGCGTGGCGCCCGTGCATCAGTCGGTT
CTGGGACGTCGTCACTGTTTCCAGGTACGGGGCGGGCCTCGTGGCGAGCG
GTACTACTCATGCGGATCGCGCCAGGAGCGCGACCTTTGGATCTACTCGC
TGCGCAAGTCGATCGCTCCGAATGCAGAGCACACGCGTCGCACGGACAAC
TCGCTGAAGATGTGGGTGTACGAGGCGAAAAATCTGCCGCCCAAGAAGCG
TTACTTTTGCGAACTGCAATTGGACAAGACGCTGTACGGCCGGACTTCGG
TGAAGCTGCAGACGGATCTGCTGTTTTGGGGGGAGCACTTCGATTTCCCC
GACATACCCGAGATTAATGTGATCACTGTTAACGTTTTCCGTGAGGTGGA
CAAGAAGAAGAAGCGGGACAAATACCAATTTGTGGGATCGGTGAAGATAC
CCGTGCACGATGTCACCTCCAGATTGCCCTGCGAACAATGGTATCCCATA
CTGAGCGACAAGGCGGGCGACAGTCTGGGCAGGACATCGGGCGGCGGCGG
CAGTGGGTCCAAGGACAAGGAGCAATTGCCCACGCTGAGGATCAAGTGTC
GTTTCCAGAGCACCGACATCCTGCCCATCAATGTGTACGGCAACTTTTTG
ACGTACCTCAAGGAGAACTATAAGCGCGTGTGCGAGACCCTGGAGCCGGT
GATCGGAGTCAAGGCCAAGGAGGACATTGGACAGGCACTGGTGCTGCTGA
TGCACGCACAGGGATTGGCGGGCGCCTTCCTCACCGATGTGGTGGCCCTC
GATCTGCTGCGAGTTGGCGATCAGAGGCTTACGTTCAGGGGCAACTCCTT
GGCCACCAAGAGCATGGAGGCATTCCTCAAGCTGACGGGCGAACAGTATC
TGCAGGACACACTATCCGCACCAATAAACGAGCTAATTCAGTCGGAGAGG
GACTGCGAGGTGGATCCCACCAAGACGAGCGGTTCGTCGGCGGGTTCGCT
GCAGCGACAGCAGGCCGCCTTGCGTGGCGCGGTCCGAGGGGCGTGGCAGT
GCATCTTCGAATCGCACAAGCATTTTCCCGCCCAGTTACGAAATTGCTTT
GCGACGTTCCGGGAGCGCTTGCAGCAGCTGGGCCGTCAGGATATGGCCGA
CAACCTGATCTCGGCGAGCATTTTCCTGCGCTTCCTGTGCCCGGCCATCC
TGTCGCCGTCGCTCTTCAATATCACCAGCGAACTGCCGTCCGCACGGGCC
ACCCGCAATCTCACACTGGTGGCCAAGACCCTGCAAACATTGGCCAATTT
CACCCGCTTCCAGGGCAAAGAGAACTTTATGGAGTTTCTCAACGATTTCC
TCGAGCAGGAGGCCGCTCGCATGCAACAGTTTCTGGAGATTATATCCACG
CGGCCGGAGCACCCAGCTCCAGACTCGATCCTCGATTGGGCCGGGTACAT
CGACCAGGGCAAACAGTTGTCCATACTACACAGTTTGCTCAGCGAAAGCC
TGGCCAAGCTGCCGGAGGCCAGGCAGCACGAGCTGGATCCGTTGCAGCAT
ATTCTCGATGAAATCAGCCGAGCCAAAGAGCATGGCATGGGCACAGCACT
GCCGGGTGGATATTTGCCGGCCACCTCGTCTACGCACTCGATAGCCAGCG
AGAATCAGGAGAATCGCAATCCGGGATCCTCGGGCTCGCACGCTGGCTCC
AACTCGGAGCAGTTACTGCCACAACAAAGCCAGTTGGCCCAGCCGCAGCA
TGCGATTGTTAGTAAACCATTATCTGCGGAGCGCGGCATCATGCGAGGAG
TACTTACGCCGAATTCTCTGGAGAAGAATATCTTTAGATACAATGATCCC
ACGGTTAATGGCTTACTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAGCAACAGCAACATCAGCAGCTGCAACAGCATGGCCATCAGCAAC
AGCCGCACCACCAGCATCCACTCCAGATGCTCTCCAATTCACAAACCTCC
ATTGCCGGCAACCAATATATGAGTTCGCCAGGAGGCCTGCAGCATGCCCA
ATCGCAGACCTCGATGGCGTCCTCATCGCTTAATGGGAGCAGCAGCAATT
TGCTGCACGGCCACCAGCAGCATGCCCATCACCCGCAGCAACTGCATCCA
CATCACTGCCCGCCGGCGCCACAGACCAGTGCCTCCAGCACTATGGAGCG
CATGGATCGCATGAACTATCCGTATATGTCGCACAATGGCAATGACTACG
AGACCAGCACGCCTTCGAGCACTCGCTCCAGGACACTGCCACGGAATGGA
AATCCCAATGCCAATGGCAACGTGGGCAGCAGCAACAATAACCAGAGCGG
CAGCTACGATGACATGCACGGGGAGTTCCAAATCCAGATCTCTGGGTTCG
ATACGAGCAGTGCTTTTGTCTGCAAGTCGCCCACACCCATGATGAAATCC
AGTTTGGGACCAGCGGGGGCCGGACGAAGTCATCACAAACTGAATTTGGG
AATACCCGATCACTCAGGTGGCTATGTGCGGGGTAATAATTTGAATCCCA
ACTCGAATATGCCCAAGAACTTGGAGGATCTGGACGATCTGTTCAAGTAC
GCCGAGGAGCATGACGTGGCGGAACCAGCGAACCATCACAATCACAACCA
GGGTCAGCAGAACCACCAGGGACATCTGAAGCCGGCCGCCGTTCCCGGCA
AGGAGCAGCTGTCGGCGAAAAGCAGTCACTGCAGTTCTGGCTACCAGAGC
ATCTCCACAAATCCCTCGCCCTCGCAGTCCTCCAGTCCCGTGGAGAGCCA
GCTGAAGGCCGCGATGGGCAGTCACAATGCGCCGCTGGCCTTCAAGAATC
CCTCCTATCAGCTTCAGCCCCAAACTGGCTCGTCCAGATCATCGGCACAG
AGTAATACACACCAGCAGCAGCAGCAGCAGCAACAACAACAGTTTGGCAG
CCGCTTGAAACCAATTGGCGGCGGACTGGTGGCCGCGAGGGCGGCTTTCC
TCAACAGTGGCGGAGCCTTGGAGGCGGCCACTTTGACGCCCAGCTCCTCG
GACGAACAGCTCTCGGCGGATAATTACTTCAGTTATGCAGCGGCTGCAGC
TGCTGGAGCGGGTATTGCCACCAAATTGGAGGCTCAACGCTCGCTCAGCG
GCGGCAGTAGCTCCTCCACCTCAGCATCTGCGTCCACCTCGAATCTTGGC
AAGAGCGGCGGCTCATCCGCCTACGGGCGGCTGAATGGGCCGCTGAAGCG
CGAGGATGTCTACGGCAGTGGCTACGGCGGCAGCAGTGGAAATGTGGGCT
ATGGCTTGTCCACTTCCAGTGCCGCGGGACACCATCAACATCCCCACCAG
CAGCAGCAGAATCCGATGCAGCAGCAGCAGCAAAGGGAACGGGATCAGGA
ACACAAGCAGTATGCCGGCAGTGTGGCGGGCAGCGTGGGATCGGCCACAT
CAGCGGCTCAGAGGCGCCTGAGCTTGGACTCGGCGCGCACGCTCTCCGAC
AGCAGCACGGATACAGAGGGACACTGCAACCAATTGCAGGAGGGCAAGCG
ACGCAGGCAGTTGCGCAGCAGTGGCGGCAGCGGCGGAGGAGGAGCCGGTT
CTGAGCAGGGACTGGGCAAGAGCTATGACCAGAACGGAGAGATTCAGCTG
CTGCAACAGACGCTGGACACGCTCTGCCACACGCTGGACCGGGATGAGGC
CGAGCTTCGCGACTCCAGCGACGAGCTGTTTGGCCTGCAGCGTCCGGCGG
GCAGCAATGGATCGAACAATCTTAGCCTGCAGTCGGAGTCCACTATGCGC
AGCATCATCGACAGACTCATAACCATGGAGGAGGAGCTGCGACGCGAGCA
GCTGAAGATGTCGCTGGCGCTGTCGCACAAGCAGCGCGTGATCGAGGAGC
AGGGCCAGCAGATTGCGGCACTGGATGCGGCCAACAGCCGGCTGCTGAGT
GCCCTGACCGCCCTGCGCCAGCGGTACGAGACCCAGCAGCAGCAGCAGCA
GCACCAAGCACCACCAAAGACCCAGAAGCCGCAGGCAAGCTTTCTAGACC
AT
BO11427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42684-RB | 4671 | CG42684-PB | 1..4668 | 17..4684 | 23340 | 100 | Plus |
| CG42684-RH | 4692 | CG42684-PH | 1..4689 | 17..4684 | 23095 | 99.6 | Plus |
| CG42684-RG | 4698 | CG42684-PG | 219..4695 | 208..4684 | 22385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42684-RB | 6323 | CG42270-RB | 898..5565 | 17..4684 | 23340 | 100 | Plus |
| CG42684-RH | 6022 | CG42684-RH | 898..5586 | 17..4684 | 23095 | 99.6 | Plus |
| CG42684-RG | 6028 | CG42684-RG | 1116..5592 | 208..4684 | 22385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17746965..17750487 | 648..4170 | 17615 | 100 | Plus |
| X | 23542271 | X | 17750553..17750848 | 4169..4464 | 1480 | 100 | Plus |
| X | 23542271 | X | 17751027..17751249 | 4462..4684 | 1115 | 100 | Plus |
| X | 23542271 | X | 17721422..17721615 | 208..401 | 970 | 100 | Plus |
| X | 23542271 | X | 17746771..17746898 | 523..650 | 640 | 100 | Plus |
| X | 23542271 | X | 17746569..17746691 | 400..522 | 615 | 100 | Plus |
| X | 23542271 | X | 17720586..17720699 | 95..208 | 570 | 100 | Plus |
| X | 23542271 | X | 17711041..17711119 | 17..95 | 395 | 100 | Plus |
| X | 23542271 | X | 9755014..9755112 | 2518..2616 | 225 | 81.8 | Plus |
Blast to na_te.dros performed 2014-11-27 07:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6767 | 2935..3007 | 132 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6788 | 2962..3007 | 122 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6809 | 2962..3007 | 122 | 73.9 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 562..729 | 4374..4211 | 119 | 60.8 | Minus |
BO11427.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:28 Download gff for
BO11427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42270-RB | 250..4928 | 9..4690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:23 Download gff for
BO11427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42684-RB | 898..5565 | 17..4686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:50 Download gff for
BO11427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42270-RB | 256..4923 | 17..4686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:14 Download gff for
BO11427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42684-RB | 898..5565 | 17..4686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:14 Download gff for
BO11427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17711041..17711119 | 17..95 | 100 | -> | Plus |
| X | 17720587..17720699 | 96..208 | 100 | -> | Plus |
| X | 17721423..17721615 | 209..401 | 100 | -> | Plus |
| X | 17746571..17746691 | 402..522 | 100 | -> | Plus |
| X | 17746771..17746898 | 523..650 | 100 | -> | Plus |
| X | 17746968..17750486 | 651..4169 | 100 | -> | Plus |
| X | 17750554..17750848 | 4170..4464 | 100 | -> | Plus |
| X | 17751030..17751249 | 4465..4686 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:23 Download gff for
BO11427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17605074..17605152 | 17..95 | 100 | -> | Plus |
| arm_X | 17614620..17614732 | 96..208 | 100 | -> | Plus |
| arm_X | 17615456..17615648 | 209..401 | 100 | -> | Plus |
| arm_X | 17640604..17640724 | 402..522 | 100 | -> | Plus |
| arm_X | 17640804..17640931 | 523..650 | 100 | -> | Plus |
| arm_X | 17641001..17644519 | 651..4169 | 100 | -> | Plus |
| arm_X | 17644587..17644881 | 4170..4464 | 100 | -> | Plus |
| arm_X | 17645063..17645282 | 4465..4686 | 99 | | Plus |
BO11427.pep Sequence
Translation from 16 to 4702
> BO11427.pep
MGRRTYLSRSSTISYPSRIEGWLDVCETEGELTRLIKTLPWGPLYCVLQQ
DDQTFTAYCSEEISLGDVCYEDIPRVRLDRVRRPAKALWDGPPTLVEENE
DSDSCVGGSGGMSGINDIVLNTTLYSELDTSYEKACRRGSAPTTPILGSK
QHQTEHNATSRFTNFFSKKSNPLKRTKSVTKLERTKRGSGGLRGSRSHES
LLSSHAVMSTIDLSCTGAVGVAPVHQSVLGRRHCFQVRGGPRGERYYSCG
SRQERDLWIYSLRKSIAPNAEHTRRTDNSLKMWVYEAKNLPPKKRYFCEL
QLDKTLYGRTSVKLQTDLLFWGEHFDFPDIPEINVITVNVFREVDKKKKR
DKYQFVGSVKIPVHDVTSRLPCEQWYPILSDKAGDSLGRTSGGGGSGSKD
KEQLPTLRIKCRFQSTDILPINVYGNFLTYLKENYKRVCETLEPVIGVKA
KEDIGQALVLLMHAQGLAGAFLTDVVALDLLRVGDQRLTFRGNSLATKSM
EAFLKLTGEQYLQDTLSAPINELIQSERDCEVDPTKTSGSSAGSLQRQQA
ALRGAVRGAWQCIFESHKHFPAQLRNCFATFRERLQQLGRQDMADNLISA
SIFLRFLCPAILSPSLFNITSELPSARATRNLTLVAKTLQTLANFTRFQG
KENFMEFLNDFLEQEAARMQQFLEIISTRPEHPAPDSILDWAGYIDQGKQ
LSILHSLLSESLAKLPEARQHELDPLQHILDEISRAKEHGMGTALPGGYL
PATSSTHSIASENQENRNPGSSGSHAGSNSEQLLPQQSQLAQPQHAIVSK
PLSAERGIMRGVLTPNSLEKNIFRYNDPTVNGLLQQQQQQQQQQQQQQQQ
HQQLQQHGHQQQPHHQHPLQMLSNSQTSIAGNQYMSSPGGLQHAQSQTSM
ASSSLNGSSSNLLHGHQQHAHHPQQLHPHHCPPAPQTSASSTMERMDRMN
YPYMSHNGNDYETSTPSSTRSRTLPRNGNPNANGNVGSSNNNQSGSYDDM
HGEFQIQISGFDTSSAFVCKSPTPMMKSSLGPAGAGRSHHKLNLGIPDHS
GGYVRGNNLNPNSNMPKNLEDLDDLFKYAEEHDVAEPANHHNHNQGQQNH
QGHLKPAAVPGKEQLSAKSSHCSSGYQSISTNPSPSQSSSPVESQLKAAM
GSHNAPLAFKNPSYQLQPQTGSSRSSAQSNTHQQQQQQQQQQFGSRLKPI
GGGLVAARAAFLNSGGALEAATLTPSSSDEQLSADNYFSYAAAAAAGAGI
ATKLEAQRSLSGGSSSSTSASASTSNLGKSGGSSAYGRLNGPLKREDVYG
SGYGGSSGNVGYGLSTSSAAGHHQHPHQQQQNPMQQQQQRERDQEHKQYA
GSVAGSVGSATSAAQRRLSLDSARTLSDSSTDTEGHCNQLQEGKRRRQLR
SSGGSGGGGAGSEQGLGKSYDQNGEIQLLQQTLDTLCHTLDRDEAELRDS
SDELFGLQRPAGSNGSNNLSLQSESTMRSIIDRLITMEEELRREQLKMSL
ALSHKQRVIEEQGQQIAALDAANSRLLSALTALRQRYETQQQQQQHQAPP
KTQKPQASFLDH
BO11427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42684-PB | 1556 | CG42270-PB | 1..1556 | 1..1556 | 8089 | 100 | Plus |
| CG42684-PH | 1563 | CG42684-PH | 1..1563 | 1..1556 | 8071 | 99.6 | Plus |
| CG42684-PG | 1565 | CG42684-PG | 1..1565 | 1..1556 | 8069 | 99.4 | Plus |
| CG42684-PC | 1580 | CG42270-PC | 1..1580 | 1..1556 | 8054 | 98.5 | Plus |
| CG42684-PE | 1589 | CG42684-PE | 1..1589 | 1..1556 | 8034 | 97.9 | Plus |
