Clone Sequence Records
BO11435.3prime Sequence
794 bp (742 high quality bases) assembled on 2006-04-19
> BO11435.3prime
ATGGTCTAGAAAGCTTGCATTGTGGACTGGCATGGGCAGCTGGCCGAGCA
GATTGTTGGCGAACTGCGAGTTGGTGAACTTAAAGTGCCGCTTGTCGTAG
AACTTAAGCAGCGCCGGCGAGAACGGATGGTTGTTCTTCAGGTGCAGATA
GTGGACCTCCGGCTCGCAGGTGGTGTGTCCGCACTCCTCGCACACGTACA
TCTTGGCTCTGCGCTCCTTGTAGGCATACTGGTGCTGAACGCTATGCACC
TTCTGGCAGTGCGACTCGAGGGAACAGCGCTGCGTGAAGCTCTTCTCGCA
GAGATTGCACTTGTACGGCCGGACGCCCGTGTGGGTGCGCGTGTGGCGCT
TGAGGTCGAAGGTGTCGTTGAATCCCTTGCCGCAGAACGTGCACAGATAC
CGCTTGATGTCCGAGTGACACTTCATGTGCCGATTGAGCAGGCGCTGCAG
CGAGAATGTCTTCATGCAGACGCGGCAGACGAACTTATTGTTGCCCGACG
ACGAATCCTCATTGGCTCCGCCGGATGAGCCCATGCAAAGGGCTTCGGCG
GATCCATGACTGCTGGCATTGCTGCTTGCACTGCTGTTACTGTGGTGCTG
ATGGTGCTGCTGCTGCTGTTGCTGCTGCAGGGATTGCTGCTGTTGCACCG
ACTGCTGTTGCACCGATTGTTGCATATTTTGCTGCTGCGGCGAGCCCTGC
TGCTGTTGGTGCTGCGAGTGGTGGCCATGCTTGCTGAGATCATCAATGCA
ATCGATGTTGCGAATTCGGTGATGGCCACCGTGGGCATTCTCCA
BO11435.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6824-PA | 2928 | ovo-RA | 2150..2925 | 794..19 | 3880 | 100 | Minus |
| CG6824-PB | 4056 | ovo-RB | 3278..4053 | 794..19 | 3880 | 100 | Minus |
| CG6824-PC | 3669 | ovo-RC | 2891..3666 | 794..19 | 3880 | 100 | Minus |
| CG6824-PD | 3087 | ovo-RD | 2309..3084 | 794..19 | 3880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-RE | 6763 | CG6824-RE | 4136..4911 | 794..19 | 3880 | 100 | Minus |
| ovo-RD | 5948 | CG6824-RD | 3478..4253 | 794..19 | 3880 | 100 | Minus |
| ovo-RC | 5518 | CG6824-RC | 2891..3666 | 794..19 | 3880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5068206..5068798 | 794..202 | 2965 | 100 | Minus |
| X | 23542271 | X | 5068893..5069077 | 203..19 | 925 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 20:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6900 | 736..561 | 339 | 69.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6867 | 710..561 | 304 | 68.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2511 | 723..542 | 266 | 63.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6915 | 736..582 | 265 | 66.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2966 | 736..560 | 264 | 64.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2512 | 736..561 | 256 | 62.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2461 | 715..570 | 247 | 66 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6921 | 736..593 | 231 | 63.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2922 | 736..562 | 211 | 64.6 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 628..737 | 618..728 | 211 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2535 | 737..583 | 207 | 62.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6977 | 736..575 | 199 | 60.4 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1165 | 723..619 | 176 | 64.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..7003 | 731..576 | 145 | 56.3 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 948..1006 | 737..677 | 129 | 70.5 | Minus |
BO11435.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:30 Download gff for
BO11435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6824-PC | 2892..3669 | 18..793 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:16 Download gff for
BO11435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6824-PD | 2310..3087 | 18..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:36:48 Download gff for
BO11435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RC | 2892..3671 | 11..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:49:34 Download gff for
BO11435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RC | 2892..3671 | 11..793 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:49:34 Download gff for
BO11435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5068207..5068798 | 202..793 | 100 | -> | Minus |
| X | 5068895..5069082 | 11..201 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:36:48 Download gff for
BO11435.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4962240..4962831 | 202..793 | 100 | -> | Minus |
| arm_X | 4962928..4963115 | 11..201 | 97 | | Minus |
BO11435.5prime Sequence
862 bp (759 high quality bases) assembled on 2006-04-19
> BO11435.5prime
GAAGTTATCAGTCGACATGCCGAAGATTTTCCTGATCAAAAATCGCCTGC
ATCAGCAGCAACAGCGCTTGCTTGAATCGCAAAACTTGCTGCAGCACAAG
AATCAGGATGATGAGCGCTTGGTGCCGCCCCTCAGTCCAAGTGGGAGTGG
TAGCGGCCCCTCGCCAACGCCCACATCCCAACCACCACCGGAACCGCAAG
GTCAGGGGCAACAGGTGCTCGGACAGGTGCCCGATTCAGATCAACAGCCA
CTGAGCCTCACGCGCAAACGATTCCACCATCGTCGTCACTACTTCGGACA
ATCGCGCCACAGTCTCGATCATCTCAATCAAAATCAGAGCCCGAATCCAA
ATGCAAATGCAAATCCCAATCAAATACAAAATCCTGCGGAATTGGAAGTC
GAATGCGCCACTGGCCAAGTTCAAAATGAAAACTTTGCCGCCGAGTTGCT
GCAGCGTTTGACACCAAACACTGCCACCACTGCACAAAATAATATTGTTA
ACAATTTGGTTAATAATAGCAGAGCCGCCACCTCCGTTTTAGCCACTAAA
GACTGTACAATTGAAAATTCCCCAATTAGCATACCAAAAAATCAGCGAGC
AGAGGACGAGGAGGAGCAAGAAGACCAGGAAAAAGAGAAGCCCGCAGAGC
GGGAGAGAGAGAAGTCCGATGAGAGGACAGAACAGGTAGAAAAGGAGGAG
CGGGTGGAGCGCGAAGAGGAGGAGGACGACGAGGTGGATGTCGGCGTAAA
GGCGCCACGCCCACGATTCTATAATACCGGCGTGGTCTTACCCAGGCCCA
ACGCAAGGAGTATCCCCAAGAGCCCAAGGACTTATCCCTAACCATCGCCA
AATCCTCGCCAG
BO11435.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6824-PB | 4056 | ovo-RB | 1..774 | 17..790 | 3845 | 99.8 | Plus |
| CG6824-PC | 3669 | ovo-RC | 26..387 | 429..790 | 1785 | 99.7 | Plus |
| CG6824-PB | 4056 | ovo-RB | 775..847 | 790..862 | 365 | 100 | Plus |
| CG6824-PC | 3669 | ovo-RC | 388..460 | 790..862 | 365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-RE | 6763 | CG6824-RE | 858..1705 | 16..862 | 4200 | 99.8 | Plus |
| ovo-RB | 6606 | CG6824-RB | 858..1705 | 16..862 | 4200 | 99.8 | Plus |
| ovo-RD | 5948 | CG6824-RD | 78..513 | 428..862 | 2140 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5064452..5064887 | 428..862 | 2115 | 99.5 | Plus |
| X | 23542271 | X | 5049130..5049542 | 16..428 | 2065 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:43:29 has no hits.
BO11435.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:31 Download gff for
BO11435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6824-PB | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:16 Download gff for
BO11435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6824-PB | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:12:59 Download gff for
BO11435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 849..1705 | 7..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:57 Download gff for
BO11435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 849..1705 | 7..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:57 Download gff for
BO11435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5049121..5049542 | 7..428 | 99 | -> | Plus |
| X | 5064453..5064887 | 429..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:12:59 Download gff for
BO11435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4943154..4943575 | 7..428 | 99 | -> | Plus |
| arm_X | 4958486..4958920 | 429..862 | 99 | | Plus |
BO11435.complete Sequence
4087 bp assembled on 2008-11-10
GenBank Submission: KX795061
> BO11435.complete
GAAGTTATCAGTCGACATGCCGAAGATTTTCCTGATCAAAAATCGCCTGC
ATCAGCAGCAACAGCGCTTGCTTGAATCGCAAAACTTGCTGCAGCACAAG
AATCAGGATGATGAGCGCTTGGTGCCGCCCCTCAGTCCAAGTGGGAGTGG
TAGCGGCCCCTCGCCAACGCCCACATCCCAACCACCACCGGAACCGCAAG
GTCAGGGGCAACAGGTGCTCGGACAGGTGCCCGATTCAGATCAACAGCCA
CTGAGCCTCACGCGCAAACGATTCCACCATCGTCGTCACTACTTCGGACA
ATCGCGCCACAGTCTCGATCATCTCAATCAAAATCAGAGCCCGAATCCAA
ATGCAAATGCAAATCCCAATCAAATACAAAATCCTGCGGAATTGGAAGTC
GAATGCGCCACTGGCCAAGTTCAAAATGAAAACTTTGCCGCCGAGTTGCT
GCAGCGTTTGACACCAAACACTGCCACCACTGCACAAAATAATATTGTTA
ACAATTTGGTTAATAATAGCAGAGCCGCCACCTCCGTTTTAGCCACTAAA
GACTGTACAATTGAAAATTCCCCAATTAGCATACCAAAAAATCAGCGAGC
AGAGGACGAGGAGGAGCAAGAAGACCAGGAAAAAGAGAAGCCCGCAGAGC
GGGAGAGAGAGAAGTCCGATGAGAGGACAGAACAGGTAGAAAAGGAGGAG
CGGGTGGAGCGCGAAGAGGAGGAGGACGACGAGGTGGATGTCGGCGTAGA
GGCGCCACGCCCACGATTCTATAATACCGGCGTGGTCTTAACCCAGGCCC
AACGCAAGGAGTATCCCCAAGAGCCCAAGGACTTATCCCTAACCATCGCC
AAATCCTCGCCAGCTTCACCGCATATCCACAGTGACTCCGAATCCGATTC
GGACTCTGATGGGGGCTGCAAGCTAATTGTGGACGAGAAGCCACCATTGC
CGGTGATCAAACCATTGTCCCTGCGCTTGCGCAGCACACCGCCACCGGCG
GATCAACGACCAAGTCCGCCGCCTCCGCGAGATCCCGCGCCCGCTGTCCG
CTGCTCGGTGATCCAACGGGCGCCGCAATCCCAATTGCCCACCAGCCGGG
CTGGCTTCCTATTGCCCCCCTTGGATCAGCTAGGACCCGAGCAGCAGGAG
CCCATCGATTATCACGTGCCGAAGCGAAGGAGCCCCTCTTATGACTCCGA
TGAGGAGCTGAACGCCAGGCGCCTGGAACGAGCGCGGCAGGTGCGCGAGG
CAAGACGACGCAGCACCATTTTGGCCGCACGAGTTCTGCTCGCCCAGTCC
CAAAGGCTTAATCCGCGCTTGGTGCGATCCTTGCCCGGTATTTTGGCTGC
GGCAGCCGGACACGGACGGAATAGCAGCAGTTCCAGCGGTGCCGCCGGGC
AGGGCTTTCAATCGTCCGGTTTTGGCAGCCAAAACAGCGGCAGCGGCTCG
TCCAGTGGCAATCAGAACGCCGGCAGCGGCGCTGGTTCACCTGGATCTGG
TGCCGGTGGCGGTGGTGGTATGGGCGGTGGTCGCGACGGCCGAGGGAACT
ACGGACCCAATTCACCGCCAACGGGAGCATTGCCTCCGTTTTATGAGAGC
CTCAAGAGCGGCCAACAGAGCACGGCCAGCAACAATACGGGCCAAAGTCC
CGGCGCCAATCATTCGCATTTCAACGCAAATCCAGCGAATTTTCTGCAAA
ACGCAGCAGCGGCTGCGTACATCATGTCGGCAGGTTCCGGTGGAGGAGGC
TGCACCGGAAACGGAGGTGGTGGAGCATCGGGGCCAGGAGGTGGCCCATC
GGCAAATAGTGGTGGTGGTGGTGGTGGTGGCGGCGGCAATGGGTACATCA
ACTGTGGTGGTGTTGGTGGTCCAAACAATAGTCTCGACGGTAATAATCTA
TTGAACTTCGCCAGTGTTTCTAACTATAACGAATCCAATTCCAAATTCCA
TAATCATCATCATCATCATCAACACAACAACAACAACAACAACAATGGTG
GTCAAACATCTATGATGGGTCATCCCTTTTACGGCGGTAATCCCTCAGCC
TACGGCATAATACTCAAGGATGAACCGGACATTGAGTACGACGAGGCCAA
GATCGATATTGGCACCTTTGCGCAGAACATTATCCAGGCAACGATGGGCA
GCTCCGGTCAGTTCAATGCCAGCGCCTATGAGGATGCTATAATGTCGGAC
CTGGCCAGTTCGGGTCAGTGTCCCAATGGAGCCGTCGATCCGCTTCAGTT
CACAGCCACTCTGATGCTGAGTTCGCAGACCGATCATTTACTGGAGCAGC
TGTCCGATGCCGTGGACTTGAGTTCATTCCTGCAAAGGAGCTGCGTGGAC
GACGAGGAGTCCACCAGTCCGCGGCAGGATTTCGAGCTGGTGTCCACGCC
CTCGCTAACGCCGGATTCAGTGACGCCGGTGGAGCAGCACAATACCAATA
CAACCCAGCTGGATGTCCTGCACGAGAATCTGTTGACGCAGCTGACCCAC
AATATAGTCCGGGGCGGCAGCAATCAGCAGCAGCAGCACCATCAACAGCA
TGGTGTGCAGCAGCAACAGCAGCAGCAGCATAGTGTGCAGCAGCAACAGC
AGCACAATGTGCAACAGCAGCATGGCGTGCAGCAGCAACATGTCCAGCAG
CAACCACCGCCCTCGTATCAGCATGCCACGCGTGGCCTGATGATGCAACA
GCAGCCGCAGCACGGCGGCTATCAGCAGCAAGCTGCCATCATGTCGCAAC
AGCAGCAGCAATTGCTCAGCCAGCAGCAGCAGCAGTCGCACCACCAGCAG
CAGCAGCAGCAGCAACATGCCGCTGCCTACCAGCAGCACAACATCTATGC
ACAGCAGCAACAGCAGCAGCAGCAGCAGCATCATCAACAGCAGCAACAGC
AGCAACATCATCACTTCCACCACCAGCAACAACAGCAGCCACAGCCACAG
TCGCATCATTCGCACCATCATGGCCATGGTCATGACAACAGCAACATGTC
GCTTCCCTCGCCAACTGCGGCTGCAGCGGCGGCGGCCGCTGCTGCTGCTG
CTGCGGCAGCCGCAGCCGCTCATCTGCAGCGTCCGATGAGCAGCAGCAGC
AGCTCCGGCGGCACCAATAGCAGCAACAGTAGCGGTGGCAGCAGCAACAG
TCCGCTCCTAGATGCAAACGCTGCTGCGGCAGCTGCAGCTGCTTTGTTGG
ACACAAAGCCACTCATCCAAAGCTTGGGCTTGCCGCCGGATCTGCAGCTT
GAGTTTGTGAACGGCGGCCATGGCATTAAGAACCCGCTGGCCGTGGAGAA
TGCCCACGGTGGCCATCACCGAATTCGCAACATCGATTGCATTGATGATC
TCAGCAAGCATGGCCACCACTCGCAGCACCAACAGCAGCAGGGCTCGCCG
CAGCAGCAAAATATGCAACAATCGGTGCAACAGCAGTCGGTGCAACAGCA
GCAATCCCTGCAGCAGCAACAGCAGCAGCAGCACCATCAGCACCACAGTA
ACAGCAGTGCAAGCAGCAATGCCAGCAGTCATGGATCCGCCGAAGCCCTT
TGCATGGGCTCATCCGGCGGAGCCAATGAGGATTCGTCGTCGGGCAACAA
TAAGTTCGTCTGCCGCGTCTGCATGAAGACATTCTCGCTGCAGCGCCTGC
TCAATCGGCACATGAAGTGTCACTCGGACATCAAGCGGTATCTGTGCACG
TTCTGCGGCAAGGGATTCAACGACACCTTCGACCTCAAGCGCCACACGCG
CACCCACACGGGCGTCCGGCCGTACAAGTGCAATCTCTGCGAGAAGAGCT
TCACGCAGCGCTGTTCCCTCGAGTCGCACTGCCAGAAGGTGCATAGCGTT
CAGCACCAGTATGCCTACAAGGAGCGCAGAGCCAAGATGTACGTGTGCGA
GGAGTGCGGACACACCACCTGCGAGCCGGAGGTCCACTATCTGCACCTGA
AGAACAACCATCCGTTCTCGCCGGCGCTGCTTAAGTTCTACGACAAGCGG
CACTTTAAGTTCACCAACTCGCAGTTCGCCAACAATCTGCTCGGCCAGCT
GCCCATGCCAGTCCACAATGCAAGCTTTCTAGACCAT
BO11435.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-RE | 4056 | CG6824-PE | 1..4053 | 17..4069 | 20250 | 100 | Plus |
| ovo-RB | 4056 | CG6824-PB | 1..4053 | 17..4069 | 20250 | 100 | Plus |
| ovo-RC | 3669 | CG6824-PC | 26..3666 | 429..4069 | 18190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-RE | 6763 | CG6824-RE | 858..4911 | 16..4069 | 20255 | 100 | Plus |
| ovo-RB | 6606 | CG6824-RB | 858..4911 | 16..4069 | 20255 | 100 | Plus |
| ovo-RC | 5518 | CG6824-RC | 26..3666 | 429..4069 | 18190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5064452..5067247 | 428..3223 | 13965 | 100 | Plus |
| X | 23542271 | X | 5068136..5068798 | 3224..3886 | 3315 | 100 | Plus |
| X | 23542271 | X | 5049130..5049542 | 16..428 | 2065 | 100 | Plus |
| X | 23542271 | X | 5068893..5069077 | 3885..4069 | 925 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2966 | 2851..3528 | 497 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2272..2989 | 2666..3387 | 445 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2270..2922 | 2829..3526 | 411 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6900 | 3352..3527 | 339 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2865 | 2695..3192 | 335 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7219 | 2630..3131 | 322 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..3012 | 2518..2923 | 316 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6867 | 3378..3527 | 304 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2511 | 3365..3546 | 266 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2512 | 3352..3527 | 256 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6923 | 3352..3505 | 255 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2461 | 3373..3518 | 247 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6921 | 3352..3495 | 231 | 63.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 628..737 | 3470..3360 | 211 | 70.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2535 | 3351..3505 | 207 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6977 | 3352..3513 | 199 | 60.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1165 | 3365..3469 | 176 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..7003 | 3357..3512 | 145 | 56.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 948..1006 | 3351..3411 | 129 | 70.5 | Plus |
BO11435.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:00 Download gff for
BO11435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 825..4892 | 7..4077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:52 Download gff for
BO11435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 859..4911 | 17..4071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:30 Download gff for
BO11435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 835..4887 | 17..4071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:56 Download gff for
BO11435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ovo-RB | 859..4911 | 17..4071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:56 Download gff for
BO11435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5049131..5049542 | 17..428 | 100 | -> | Plus |
| X | 5064453..5067247 | 429..3223 | 99 | -> | Plus |
| X | 5068136..5068798 | 3224..3886 | 100 | -> | Plus |
| X | 5068895..5069077 | 3887..4071 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:52 Download gff for
BO11435.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4943164..4943575 | 17..428 | 100 | -> | Plus |
| arm_X | 4958486..4961280 | 429..3223 | 99 | -> | Plus |
| arm_X | 4962169..4962831 | 3224..3886 | 100 | -> | Plus |
| arm_X | 4962928..4963110 | 3887..4071 | 98 | | Plus |
BO11435.pep Sequence
Translation from 16 to 4087
> BO11435.pep
MPKIFLIKNRLHQQQQRLLESQNLLQHKNQDDERLVPPLSPSGSGSGPSP
TPTSQPPPEPQGQGQQVLGQVPDSDQQPLSLTRKRFHHRRHYFGQSRHSL
DHLNQNQSPNPNANANPNQIQNPAELEVECATGQVQNENFAAELLQRLTP
NTATTAQNNIVNNLVNNSRAATSVLATKDCTIENSPISIPKNQRAEDEEE
QEDQEKEKPAEREREKSDERTEQVEKEERVEREEEEDDEVDVGVEAPRPR
FYNTGVVLTQAQRKEYPQEPKDLSLTIAKSSPASPHIHSDSESDSDSDGG
CKLIVDEKPPLPVIKPLSLRLRSTPPPADQRPSPPPPRDPAPAVRCSVIQ
RAPQSQLPTSRAGFLLPPLDQLGPEQQEPIDYHVPKRRSPSYDSDEELNA
RRLERARQVREARRRSTILAARVLLAQSQRLNPRLVRSLPGILAAAAGHG
RNSSSSSGAAGQGFQSSGFGSQNSGSGSSSGNQNAGSGAGSPGSGAGGGG
GMGGGRDGRGNYGPNSPPTGALPPFYESLKSGQQSTASNNTGQSPGANHS
HFNANPANFLQNAAAAAYIMSAGSGGGGCTGNGGGGASGPGGGPSANSGG
GGGGGGGNGYINCGGVGGPNNSLDGNNLLNFASVSNYNESNSKFHNHHHH
HQHNNNNNNNGGQTSMMGHPFYGGNPSAYGIILKDEPDIEYDEAKIDIGT
FAQNIIQATMGSSGQFNASAYEDAIMSDLASSGQCPNGAVDPLQFTATLM
LSSQTDHLLEQLSDAVDLSSFLQRSCVDDEESTSPRQDFELVSTPSLTPD
SVTPVEQHNTNTTQLDVLHENLLTQLTHNIVRGGSNQQQQHHQQHGVQQQ
QQQQHSVQQQQQHNVQQQHGVQQQHVQQQPPPSYQHATRGLMMQQQPQHG
GYQQQAAIMSQQQQQLLSQQQQQSHHQQQQQQQHAAAYQQHNIYAQQQQQ
QQQQHHQQQQQQQHHHFHHQQQQQPQPQSHHSHHHGHGHDNSNMSLPSPT
AAAAAAAAAAAAAAAAAAHLQRPMSSSSSSGGTNSSNSSGGSSNSPLLDA
NAAAAAAAALLDTKPLIQSLGLPPDLQLEFVNGGHGIKNPLAVENAHGGH
HRIRNIDCIDDLSKHGHHSQHQQQQGSPQQQNMQQSVQQQSVQQQQSLQQ
QQQQQHHQHHSNSSASSNASSHGSAEALCMGSSGGANEDSSSGNNKFVCR
VCMKTFSLQRLLNRHMKCHSDIKRYLCTFCGKGFNDTFDLKRHTRTHTGV
RPYKCNLCEKSFTQRCSLESHCQKVHSVQHQYAYKERRAKMYVCEECGHT
TCEPEVHYLHLKNNHPFSPALLKFYDKRHFKFTNSQFANNLLGQLPMPVH
NASFLDH
BO11435.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ovo-PE | 1351 | CG6824-PE | 1..1351 | 1..1351 | 7180 | 100 | Plus |
| ovo-PB | 1351 | CG6824-PB | 1..1351 | 1..1351 | 7180 | 100 | Plus |
| ovo-PC | 1222 | CG6824-PC | 9..1222 | 138..1351 | 6441 | 99.9 | Plus |
| ovo-PD | 1028 | CG6824-PD | 1..572 | 502..1073 | 3032 | 99.5 | Plus |
| ovo-PA | 975 | CG6824-PA | 1..519 | 502..1073 | 2635 | 89.9 | Plus |
| ovo-PD | 1028 | CG6824-PD | 440..1028 | 828..1351 | 1648 | 60.4 | Plus |
