Clone Sequence Records
BO11436.complete Sequence
4186 bp assembled on 2010-04-13
GenBank Submission: KX798371
> BO11436.complete
GAAGTTATCAGTCGACATGCGTGAAGCCCTTTTTTCCCAAGATGGCTGGG
GCTGTCAGCATGTTAACCAGGATACTAATTGGGAAGTTCCCAGTTCGCCA
GAACCAGCCAATAAGGATGCACCCGGTCCACCAATGTGGAAGCCAAGCAT
TAACAATGGTACTGATCTTTGGGAGTCCAATTTGAGAAACGGAGGTCAGC
CGGCCGCACAGCAAGTTCCAAAGCCGTCGTGGGGTCATACACCATCCTCT
AACTTAGGTGGAACATGGGGTGAGGACGACGATGGCGCCGATAGTAGTAG
TGTGTGGACTGGAGGAGCTGTTAGCAACGCGGGATCCGGAGCTGCAGTGG
GAGTAAACCAAGCCGGAGTTAATGTCGGTCCAGGCGGTGTTGTTTCGTCT
GGCGGACCTCAGTGGGGACAAGGTGTCGTTGGCGTCGGACTTGGATCAAC
TGGAGGTAACGGGTCAAGCAATATAACTGGATCGTCTGGAGTCGCAACAG
GTAGTAGCGGAAACTCCAGCAACGCTGGTAACGGTTGGGGAGACCCTCGT
GAAATACGCCCTTTGGGAGTTGGTGGCTCCATGGATATTCGAAATGTTGA
ACATCGCGGCGGTAACGGTTCTGGAGCAACTTCGAGCGATCCACGAGACA
TTCGCATGATCGATCCGCGTGACCCTATTCGAGGAGATCCCCGTGGAATA
TCTGGTCGTCTTAATGGGACCTCTGAAATGTGGGGTCATCATCCACAAAT
GTCCCATAACCAGTTGCAAGGTATCAACAAAATGGTTGGTCAAAGTGTAG
CAACTGCCAGCACCAGTGTCGGAACATCTGGCTCGGGCATCGGTCCTGGA
GGTCCCGGTCCTAGTACAGTATCAGGCAATATCCCAACACAGTGGGGGCC
TGCTCAACCGGTAAGCGTTGGTGTAAGTGGTCCCAAAGACATGTCAAAAC
AGATAAGTGGATGGGAGGAACCATCACCACCGCCTCAGCGTCGCAGTATT
CCTAACTACGATGATGGTACATCGTTGTGGGGTCAGCAAACTCGTGTTCC
CGCTGCAAGCGGTCACTGGAAAGACATGACTGATTCGATAGGTCGTAGTA
GTCATCTCATGCGTGGCCAAAGCCAAACGGGAGGTATAGGAATAGCCGGC
GTTGGAAATAGCAATGTTCCAGTGGGAGCCAATCCAAGTAATCCTATAAG
CAGTGTAGTTGGACCTCAAGCCCGGATTCCATCTGTGGGCGGCGTACAAC
ACAAACCAGACGGCGGCGCTATGTGGGTGCATTCCGGCAATGTAGGTGGC
AGAAATAATGTTGCTGCTGTTACTACTTGGGGAGATGACACTCATAGCGT
TAATGTCGGCGCTCCCAGCAGTGGCAGTGTATCCAGCAACAATTGGGTTG
ATGACAAGTCCAACTCAACCTTGGCACAAAACTCTTGGAGCGACCCGGCC
CCTGTTGGAGTTAGTTGGGGCAATAAGCAAAGCAAACCGCCAAGCAATAG
TGCTTCATCAGGTTGGAGCACTGCTGCGGGCGTGGTGGATGGGGTTGATC
TAGGATCTGAGTGGAACACGCACGGGGGGATTATTGGAAAATCTCAGCAA
CAACAAAAACTAGCGGGACTTAACGTGGGAATGGTGAACGTAATTAACGC
GGAGATCATTAAGCAAAGCAAGCAATACAGGATCCTTGTCGAGAACGGCT
TTAAAAAGGAAGATGTAGAGCGGGCATTAGTGATTGCTAATATGAACATC
GAAGAGGCAGCCGATATGCTCCGTGCCAACTCATCCCTATCAATGGATGG
TTGGCGTCGACATGATGAGTCCCTTGGATCTTATGCCGACCACAATAGTT
CAACAAGCAGCGGTGGATTTGCTGGTCGTTACCCGGTCAACAGTGGACAA
CCTTCAATGTCCTTTCCTCATAATAACCTTATGAATAACATGGGAGGTAC
CGCTGTTACTGGAGGTAACAACAATACAAACATGACAGCTTTACAGGTGC
AAAAGTATTTAAATCAAGGGCAACATGGTGTCGCTGTTGGACCGCAAGCC
GTTGGTAATTCTTCAGCAGTATCTGTCGGATTTGGTCAGAACACGTCTAA
CGCAGCAGTGGCAGGAGCAGCCTCTGTAAATATAGCAGCAAATACAAACA
ACCAACCGTCTGGTCAGCAAATTCGCATGCTAGGCCAGCAAATTCAGTTG
GCCATTCATAGTGGTTTCATATCTAGTCAGATATTGACTCAACCGCTAAC
TCAAACAACCCTTAACCTTTTAAACCAACTTCTTAGCAATATTAAGCATC
TCCAGGCTGCGCAGCAATCCCTTACCCGCGGGGGAAATGTCAATCCAATG
GCAGTGAATGTGGCTATATCTAAATACAAGCAGCAAATCCAGAATTTACA
GAACCAGATAAATGCACAACAGGCTGTGTATGTAAAACAGCAAAATATGC
AACCAACTTCACAACAACAACAGCCCCAACAACAGCAACTTCCTTCTGTT
CATCTAAGTAACTCAGGCAACGACTATTTAAGAGGTCACGATGCAATAAA
TAATTTGCAAAGCAACTTTTCTGAGCTCAATATTAATAAGCCAAGTGGAT
ATCAAGGAGCGTCCAATCAACAATCCCGATTAAATCAGTGGAAGCTTCCA
GTATTAGATAAGGAGATCAACTCTGACAGTACGGAATTTTCTCGTGCCCC
AGGTGCAACGAAACAAAATTTGACGGCCAACACAAGCAACATAAACTCTT
TGGGTCTTCAAAACGATAGTACATGGTCAACTGGACGCAGTATTGGTGAC
GGTTGGCCTGATCCCTCATCTGATAACGAGAATAAAGACTGGTCTGTTGC
TCAGCCAACTTCAGCAGCAACTGCTTACACTGATCTGGTCCAAGAGTTTG
AGCCAGGCAAGCCATGGAAGGGTTCACAGATCAAAAGCATAGAAGATGAT
CCCAGCATTACACCAGGAAGCGTTGCTAGATCTCCATTGTCTATTAATTC
GACGCCAAAAGATGCTGACATATTTGCCAATACCGGTAAAAATTCACCGA
CTGATTTACCGCCACTAAGTTTATCGTCGTCTACATGGAGTTTTAATCCA
AACCAAAATTATCCGAGTCACAGTTGGTCTGACAATAGTCAACAATGTAC
CGCCACTTCGGAGCTTTGGACAAGCCCGCTAAATAAATCATCGTCTCGAG
GTCCCCCGCCAGGATTGACTGCCAATTCAAATAAATCTGCAAATAGTAAT
GCGTCAACGCCAACAACTATTACCGGAGGTGCGAATGGATGGTTACAGCC
TCGAAGTGGCGGTGTTCAAACCACAAACACTAATTGGACAGGTGGTAACA
CCACTTGGGGCTCCAGTTGGTTGCTTTTGAAAAATCTAACAGCACAGATT
GATGGTCCTACTTTGCGTACACTGTGTATGCAGCATGGGCCCCTTGTCAG
CTTTCACCCGTATTTGAACCAAGGAATTGCCTTATGTAAATATACTACTC
GTGAGGAGGCGAACAAGGCGCAAATGGCGTTAAACAACTGTGTCCTCGCC
AACACCACAATATTTGCTGAATCTCCCAGCGAGAACGAGGTGCAAAGCAT
TATGCAGCACTTACCACAAACTCCTTCCTCTACAAGCTCTAGTGGAACTA
GTGGTGGCAACGTCGGAGGCGTCGGCACTTCAGCCAATAATGCAAACAGT
GGTTCTGCAGCTTGTCTGTCCGGAAACAATAGCGGCAACGGAAACGGCAG
CGCGAGCGGCGCCGGCAGCGGCAACAATGGCAACAGTAGCTGCAACAACA
GTGCCGCCGGGGGGGGCAGCAGCAGCAACAACACGATTACCACTGTAGCA
AATTCGAATCTTGTTGGTTCTAGTGGCTCTGTCTCAAATTCCTCTGGCGT
TACTGCTAACTCTAGTACTGTTTCTGTAGTTAGTTGTACAGCGAGTGGGA
ATTCCATAAATGGGGCAGGTACTGCAAACAGTTCTGGTTCAAAGAGTAGT
GCAAACAATTTAGCTAGCGGCCAGTCTAGCGCTTCTAACTTAACTAATAG
CACCAATTCAACATGGCGACAAACTAGCCAAAACCAAGCTCTTCAAAGTC
AAAGCAGGCCATCAGGCAGAGAAGCTGACTTTGATTATATATCTCTCGTT
TATTCCATTGTTGATGATGCAAGCTTTCTAGACCAT
BO11436.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gw-RA | 4155 | CG31992-PA | 1..4152 | 17..4168 | 20760 | 100 | Plus |
| gw-RF | 4155 | CG31992-PF | 1..4152 | 17..4168 | 20760 | 100 | Plus |
| gw-RB | 4155 | CG31992-PB | 1..4152 | 17..4168 | 20760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gw-RA | 5036 | CG31992-RA | 596..4747 | 17..4168 | 20760 | 100 | Plus |
| gw-RF | 4718 | CG31992-RF | 278..4429 | 17..4168 | 20760 | 100 | Plus |
| gw-RB | 4792 | CG31992-RB | 352..4503 | 17..4168 | 20760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 656216..657685 | 1921..452 | 7350 | 100 | Minus |
| 4 | 1348131 | 4 | 650260..651033 | 4168..3395 | 3870 | 100 | Minus |
| 4 | 1348131 | 4 | 657901..658337 | 453..17 | 2185 | 100 | Minus |
| 4 | 1348131 | 4 | 655061..655435 | 2296..1922 | 1875 | 100 | Minus |
| 4 | 1348131 | 4 | 654505..654800 | 2590..2295 | 1480 | 100 | Minus |
| 4 | 1348131 | 4 | 652305..652586 | 3397..3116 | 1410 | 100 | Minus |
| 4 | 1348131 | 4 | 652646..652845 | 3117..2918 | 1000 | 100 | Minus |
| 4 | 1348131 | 4 | 653870..654050 | 2769..2589 | 905 | 100 | Minus |
| 4 | 1348131 | 4 | 652900..653055 | 2921..2766 | 780 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6916 | 3721..3851 | 236 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..6841 | 3713..3851 | 213 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2425 | 3725..3833 | 205 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6846 | 3721..3833 | 196 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6921 | 3721..3833 | 187 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6864 | 3725..3833 | 184 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2416 | 3740..3850 | 170 | 62.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1152 | 3743..3833 | 167 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6813 | 3743..3833 | 165 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2412..2528 | 3721..3843 | 161 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2860 | 3748..3833 | 158 | 67.4 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..727 | 3829..3743 | 156 | 64.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6808 | 3766..3851 | 153 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2410 | 3727..3833 | 150 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2262..2380 | 3720..3842 | 148 | 64.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1047..1140 | 3743..3833 | 148 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2496 | 3721..3855 | 144 | 60.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1147 | 3766..3851 | 144 | 64.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9253 | 3753..3854 | 134 | 60.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..223 | 3753..3854 | 134 | 60.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 65..168 | 3729..3833 | 128 | 63.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9095..9198 | 3729..3833 | 128 | 63.6 | Plus |
BO11436.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:27 Download gff for
BO11436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RH | 188..4339 | 17..4170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:18 Download gff for
BO11436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RB | 352..4503 | 17..4170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:35 Download gff for
BO11436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RB | 352..4503 | 17..4170 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:35 Download gff for
BO11436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 650258..651030 | 3398..4170 | 99 | <- | Minus |
| 4 | 652305..652584 | 3118..3397 | 100 | <- | Minus |
| 4 | 652646..652842 | 2921..3117 | 100 | <- | Minus |
| 4 | 652901..653051 | 2770..2920 | 100 | <- | Minus |
| 4 | 653870..654048 | 2591..2769 | 100 | <- | Minus |
| 4 | 654505..654798 | 2297..2590 | 100 | <- | Minus |
| 4 | 655061..655435 | 1922..2296 | 100 | <- | Minus |
| 4 | 656216..657684 | 453..1921 | 100 | <- | Minus |
| 4 | 657902..658337 | 17..452 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:18 Download gff for
BO11436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 675131..675424 | 2297..2590 | 100 | <- | Minus |
| arm_4 | 670884..671656 | 3398..4170 | 99 | <- | Minus |
| arm_4 | 672931..673210 | 3118..3397 | 100 | <- | Minus |
| arm_4 | 673272..673468 | 2921..3117 | 100 | <- | Minus |
| arm_4 | 673527..673677 | 2770..2920 | 100 | <- | Minus |
| arm_4 | 674496..674674 | 2591..2769 | 100 | <- | Minus |
| arm_4 | 675687..676061 | 1922..2296 | 100 | <- | Minus |
| arm_4 | 676842..678310 | 453..1921 | 100 | <- | Minus |
| arm_4 | 678528..678963 | 17..452 | 100 | | Minus |
BO11436.3prime Sequence
846 bp (762 high quality bases) assembled on 2006-04-19
> BO11436.3prime
ATGGTCTAGAAAGCTTGCATCATCAACAATGGAATAAACGAGAGATATAT
AATCAAAGTCAGCTTCTCTGCCTGATGGCCTGCTTTGACTTTGAAGAGCT
TGGTTTTGGCTAGTTTGTCGCCATGTTGAATTGGTGCTATTAGTTAAGTT
AGAAGCGCTAGACTGGCCGCTAGCTAAATTGTTTGCACTACTCTTTGAAC
CAGAACTGTTTGCAGTACCTGCCCCATTTATGGAATTCCCACTCGCTGTA
CAACTAACTACAGAAACAGTACTAGAGTTAGCAGTAACGCCAGAGGAATT
TGAGACAGAGCCACTAGAACCAACAAGATTCGAATTTGCTACAGTGGTAA
TCGTGTTGTTGCTGCTGCTGCCCCCCCCGGCGGCACTGTTGTTGCAGCTA
CTGTTGCCATTGTTGCCGCTGCCGGCGCCGCTCGCGCTGCCGTTTCCGTT
GCCGCTATTGTTTCCGGACAGACAAGCTGCAGAACCACTGTTTGCATTAT
TGGCTGAAGTGCCGACGCCTCCGACGTTGCCACCACTAGTTCCACTAGAG
CTTGTAGAGGAAGGAGTTTGTGGTAAGTGCTGCATAATGCTTTGCACCTC
GTTCTCGCTGGGAGATTCAGCAAATATTGTGGTGTTGGCGAGGACACAGT
TGTTTAACGCCATTTGCGCCTTGTTCGCCTCCTCACGAGTAGTATATTTA
CATAAGGCAATTCCTTGGTTCAAATACGGGTGAAAGCTGACAAGGGGCCC
ATGCTGCATACACAGTGTACGCAAAGTAGGACCATCAATCTGTGCTGTTA
GATTTTTTCAAAGCAACCAACTGGAGCCCCAAGTGGTGTTACCACC
BO11436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31992-PD | 4155 | CG31992-RD | 3325..4152 | 846..19 | 4090 | 99.7 | Minus |
| CG31992-PG | 4155 | CG31992-RG | 3325..4152 | 846..19 | 4090 | 99.7 | Minus |
| CG31992-PH | 4155 | CG31992-RH | 3325..4152 | 846..19 | 4090 | 99.7 | Minus |
| CG31992-PE | 4155 | CG31992-RE | 3325..4152 | 846..19 | 4090 | 99.7 | Minus |
| CG31992-PB | 4155 | CG31992-RB | 3325..4152 | 846..19 | 4090 | 99.7 | Minus |
| CG31992-PF | 4155 | CG31992-RF | 3325..4152 | 846..19 | 4090 | 99.7 | Minus |
| CG31992-PC | 4155 | CG31992-RC | 3325..4152 | 846..19 | 4090 | 99.7 | Minus |
| CG31992-PA | 4155 | CG31992-RA | 3325..4152 | 846..19 | 4090 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gw-RJ | 4786 | CG31992-RJ | 3670..4497 | 846..19 | 4110 | 99.8 | Minus |
| gw-RI | 6807 | CG31992-RI | 4761..5588 | 846..19 | 4110 | 99.8 | Minus |
| gw-RA | 5036 | CG31992-RA | 3920..4747 | 846..19 | 4110 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 650260..651033 | 19..792 | 3870 | 100 | Plus |
| 4 | 1348131 | 4 | 652305..652361 | 790..846 | 255 | 96.5 | Plus |
Blast to na_te.dros performed 2015-02-11 11:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6916 | 466..336 | 236 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..6841 | 474..336 | 213 | 62.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2320..2425 | 462..354 | 205 | 67 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6846 | 466..354 | 196 | 63.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6921 | 466..354 | 187 | 62.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6864 | 462..354 | 184 | 64.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2416 | 447..337 | 170 | 62.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1152 | 444..354 | 167 | 64.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6813 | 444..354 | 165 | 67 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2412..2528 | 466..344 | 161 | 61 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2860 | 439..354 | 158 | 67.4 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..727 | 358..444 | 156 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6808 | 421..336 | 153 | 68.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2410 | 460..354 | 150 | 61.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2262..2380 | 467..345 | 148 | 64.1 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1047..1140 | 444..354 | 148 | 63.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2496 | 466..332 | 144 | 60.3 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1147 | 421..336 | 144 | 64.4 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..223 | 434..333 | 134 | 60.2 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9253 | 434..333 | 134 | 60.2 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 65..168 | 458..354 | 128 | 63.6 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9095..9198 | 458..354 | 128 | 63.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2650 | 407..354 | 117 | 68.5 | Minus |
BO11436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:32 Download gff for
BO11436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31992-PF | 3325..4155 | 15..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:18 Download gff for
BO11436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31992-PA | 3325..4155 | 15..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:38:21 Download gff for
BO11436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RA | 3920..4750 | 15..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:43:57 Download gff for
BO11436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RA | 3920..4750 | 15..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:43:57 Download gff for
BO11436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 650256..651030 | 15..789 | 99 | <- | Plus |
| 4 | 652305..652361 | 790..846 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:38:21 Download gff for
BO11436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 670882..671656 | 15..789 | 99 | <- | Plus |
| arm_4 | 672931..672987 | 790..846 | 96 | | Plus |
BO11436.5prime Sequence
760 bp (731 high quality bases) assembled on 2006-04-19
> BO11436.5prime
GAAGTTATCAGTCGACATGCGTGAAGCCCTTTTTTCCCAAGATGGCTGGG
GCTGTCAGCATGTTAACCAGGATACTAATTGGGAAGTTCCCAGTTCGCCA
GAACCAGCCAATAAGGATGCACCCGGTCCACCAATGTGGAAGCCAAGCAT
TAACAATGGTACTGATCTTTGGGAGTCCAATTTGAGAAACGGAGGTCAGC
CGGCCGCACAGCAAGTTCCAAAGCCGTCGTGGGGTCATACACCATCCTCT
AACTTAGGTGGAACATGGGGTGAGGACGACGATGGCGCCGATAGTAGTAG
TGTGTGGACTGGAGGAGCTGTTAGCAACGCGGGATCCGGAGCTGCAGTGG
GAGTAAACCAAGCCGGAGTTAATGTCGGTCCAGGCGGTGTTGTTTCGTCT
GGCGGACCTCAGTGGGGACAAGGTGTCGTTGGCGTCGGACTTGGATCAAC
TGGAGGTAACGGGTCAAGCAATATAACTGGATCGTCTGGAGTCGCAACAG
GTAGTAGCGGAAACTCCAGCAACGCTGGTAACGGTTGGGGAGACCCTCGT
GAAATACGCCCTTTGGGAGTTGGTGGCTCCATGGATATTCGAAATGTTGA
ACATCGCGGCGGTAACGGTTCTGGAGCAACTTCGAGCGATCCACGAGACA
TTCGCATGATCGATCCGCGTGACCCTATTCGAGGAGATCCCCGTGGAATA
TCTGGTCGTCTTAATGGGACCTCTGAAATGTGGGGTCATCATCCACAAAT
GTCCCATAAC
BO11436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31992-PD | 4155 | CG31992-RD | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG31992-PG | 4155 | CG31992-RG | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG31992-PH | 4155 | CG31992-RH | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG31992-PE | 4155 | CG31992-RE | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG31992-PB | 4155 | CG31992-RB | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG31992-PF | 4155 | CG31992-RF | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG31992-PC | 4155 | CG31992-RC | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG31992-PA | 4155 | CG31992-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gw-RJ | 4786 | CG31992-RJ | 352..1095 | 17..760 | 3720 | 100 | Plus |
| gw-RI | 6807 | CG31992-RI | 1446..2189 | 17..760 | 3720 | 100 | Plus |
| gw-RA | 5036 | CG31992-RA | 596..1339 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 657901..658337 | 453..17 | 2185 | 100 | Minus |
| 4 | 1348131 | 4 | 657377..657685 | 760..452 | 1545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:03:19 has no hits.
BO11436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:33 Download gff for
BO11436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31992-PB | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:19 Download gff for
BO11436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31992-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:53:39 Download gff for
BO11436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RA | 590..1339 | 10..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:17 Download gff for
BO11436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RA | 590..1339 | 10..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:17 Download gff for
BO11436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 657377..657684 | 453..760 | 100 | <- | Minus |
| 4 | 657902..658343 | 10..452 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:53:39 Download gff for
BO11436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 678003..678310 | 453..760 | 100 | <- | Minus |
| arm_4 | 678528..678969 | 10..452 | 99 | | Minus |
BO11436.pep Sequence
Translation from 16 to 4186
> BO11436.pep
MREALFSQDGWGCQHVNQDTNWEVPSSPEPANKDAPGPPMWKPSINNGTD
LWESNLRNGGQPAAQQVPKPSWGHTPSSNLGGTWGEDDDGADSSSVWTGG
AVSNAGSGAAVGVNQAGVNVGPGGVVSSGGPQWGQGVVGVGLGSTGGNGS
SNITGSSGVATGSSGNSSNAGNGWGDPREIRPLGVGGSMDIRNVEHRGGN
GSGATSSDPRDIRMIDPRDPIRGDPRGISGRLNGTSEMWGHHPQMSHNQL
QGINKMVGQSVATASTSVGTSGSGIGPGGPGPSTVSGNIPTQWGPAQPVS
VGVSGPKDMSKQISGWEEPSPPPQRRSIPNYDDGTSLWGQQTRVPAASGH
WKDMTDSIGRSSHLMRGQSQTGGIGIAGVGNSNVPVGANPSNPISSVVGP
QARIPSVGGVQHKPDGGAMWVHSGNVGGRNNVAAVTTWGDDTHSVNVGAP
SSGSVSSNNWVDDKSNSTLAQNSWSDPAPVGVSWGNKQSKPPSNSASSGW
STAAGVVDGVDLGSEWNTHGGIIGKSQQQQKLAGLNVGMVNVINAEIIKQ
SKQYRILVENGFKKEDVERALVIANMNIEEAADMLRANSSLSMDGWRRHD
ESLGSYADHNSSTSSGGFAGRYPVNSGQPSMSFPHNNLMNNMGGTAVTGG
NNNTNMTALQVQKYLNQGQHGVAVGPQAVGNSSAVSVGFGQNTSNAAVAG
AASVNIAANTNNQPSGQQIRMLGQQIQLAIHSGFISSQILTQPLTQTTLN
LLNQLLSNIKHLQAAQQSLTRGGNVNPMAVNVAISKYKQQIQNLQNQINA
QQAVYVKQQNMQPTSQQQQPQQQQLPSVHLSNSGNDYLRGHDAINNLQSN
FSELNINKPSGYQGASNQQSRLNQWKLPVLDKEINSDSTEFSRAPGATKQ
NLTANTSNINSLGLQNDSTWSTGRSIGDGWPDPSSDNENKDWSVAQPTSA
ATAYTDLVQEFEPGKPWKGSQIKSIEDDPSITPGSVARSPLSINSTPKDA
DIFANTGKNSPTDLPPLSLSSSTWSFNPNQNYPSHSWSDNSQQCTATSEL
WTSPLNKSSSRGPPPGLTANSNKSANSNASTPTTITGGANGWLQPRSGGV
QTTNTNWTGGNTTWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL
NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEVQSIMQHLP
QTPSSTSSSGTSGGNVGGVGTSANNANSGSAACLSGNNSGNGNGSASGAG
SGNNGNSSCNNSAAGGGSSSNNTITTVANSNLVGSSGSVSNSSGVTANSS
TVSVVSCTASGNSINGAGTANSSGSKSSANNLASGQSSASNLTNSTNSTW
RQTSQNQALQSQSRPSGREADFDYISLVYSIVDDASFLDH
BO11436.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gw-PA | 1384 | CG31992-PA | 1..1384 | 1..1384 | 7295 | 100 | Plus |
| gw-PF | 1384 | CG31992-PF | 1..1384 | 1..1384 | 7295 | 100 | Plus |
| gw-PB | 1384 | CG31992-PB | 1..1384 | 1..1384 | 7295 | 100 | Plus |
| gw-PE | 1384 | CG31992-PE | 1..1384 | 1..1384 | 7295 | 100 | Plus |
| gw-PJ | 1382 | CG31992-PJ | 1..1382 | 1..1384 | 7270 | 99.9 | Plus |
