Clone BO11437 Report

Search the DGRC for BO11437

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:114
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptBest1-RA
Protein status:BO11437.pep: Imported from assembly
Sequenced Size:2197

Clone Sequence Records

BO11437.3prime Sequence

812 bp (721 high quality bases) assembled on 2006-04-19

> BO11437.3prime
ATGGTCTAGAAAGCTTGCACTGCCGTTGATGGCGTCCTCCGATTTCATCG
TCGAATTGGAGAACTGATCTCCGCCGGCCAGAAGATCGGCACTGGATGCA
ACTGGTTGCAGCTGTGCCTGTTGCACTGCCACGTTCACTGGGACCATTGG
CACCATCGGCACAGCCGTGGCTTCCATTCCCGGAGCGGTGCTAATAGTTC
TGGCCAGATTCTTTTGCTGTCGCATCAGTTTCTCCTTCTCGCGTTCCGCC
TTCAGCTTATCGAAGTCATCGCCCTCGTCTTCGGGCTGCACTGCCGCATC
GCCGAGTAGATCCGTGGAGGACCTCAGGTCCATGCTCTCCACTGTCTCTC
GGCTGGCGCCCTTTTGTGGATCGTATAGGGACTTGGAGCTCTCGCCCACT
GGCGAACTGGGTGCAGTGGCTGCATTAGACAGGAGCAGGGGACTTCCGCC
CGCAGGAGCTGAAGTACTGAGCAGTGCATCCACTCCGCCAGGTGGAAATA
GGTTGGGTTCGTACTGGGATTGGGCCCGATTGTATGAGGGCGGACGTGAC
GGGATGTCCACCGGTTCCGAGTGGGCCGGTGGTGGCTGCAGCGGTCCAGA
GGTTCCAGCTCCCGACGAGGTTTGTGCGAATATGTCCATGACATTGGGAC
GTGGATCATTGGCTCTCATGGATGTTATGGTCGCCTGTTCGTCCACCTCC
TCGATCACTTGCTGCGTAATCCTAAGACTGCCAGCTGGTTTTCCGGCCGA
TGTAGCCGATCCTACCACGGCACCCGATAAACTCGCCGAGCTGGCGCTGG
GCGGGAATTTGT

BO11437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6264-PA 2166 Best1-RA 1370..2163 812..19 3945 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Best1-RB 3269 CG6264-RB 1952..2745 812..19 3955 99.9 Minus
Best1-RA 2885 CG6264-RA 1808..2601 812..19 3955 99.9 Minus
Best1-RD 2930 CG6264-RD 1808..2278 812..342 2340 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10163199..10163669 342..812 2340 99.8 Plus
3R 32079331 3R 10161988..10162313 19..344 1630 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:33:55 has no hits.

BO11437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:34 Download gff for BO11437.3prime
Subject Subject Range Query Range Percent Splice Strand
Best1-PA 1370..2166 16..812 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:21 Download gff for BO11437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6264-PA 1370..2166 16..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:11:39 Download gff for BO11437.3prime
Subject Subject Range Query Range Percent Splice Strand
Best1-RA 1808..2606 14..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:40 Download gff for BO11437.3prime
Subject Subject Range Query Range Percent Splice Strand
Best1-RA 1808..2606 14..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:40 Download gff for BO11437.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10161983..10162310 14..341 99 <- Plus
3R 10163199..10163669 342..812 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:11:39 Download gff for BO11437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5987705..5988032 14..341 99 <- Plus
arm_3R 5988921..5989391 342..812 99   Plus

BO11437.5prime Sequence

884 bp (750 high quality bases) assembled on 2006-04-19

> BO11437.5prime
GAAGTTATCAGTCGACATGACAATTACGTACACAGGTGAAGTGGCCACTT
GTCGCGGCTTTGGCTGTTTTCTCAAATTGCTGCTCAGATGGCGAGGAAGC
ATTTACAAACTGGTTTGGCTAGATCTTCTGGCCTTCTTGACCATTTACTA
TGCGATCAACATGGTGTATCGCTTTGGCCTCAACCCCGCACAAAAAGAAA
CCTTTGAGGCCATTGTTCAGTACTGTGATAGTTACAGAGAACTCATACCC
CTGTCCTTCGTGCTTGGTTTCTATGTATCGATTGTGATGACCCGTTGGTG
GAATCAGTACACCTCCATTCCCTGGCCAGATCCCATCGCCGTGTTTGTCA
GCTCGAATGTCCATGGCCAGGATGAGCGAGGACGCATGATGAGGCGAACA
ATAATGCGATATGTGTGCCTTTGCCTGACGATGGTCCTGGCGAATGTTTC
GCCGAGGGTGAAGAAGCGTTTCCCCGGCCTAAATAATCTGGTGGAAGCGG
GTCTGCTAAATGACAATGAAAAGACCATCATCGAGACCATGAACAAGGCC
TTTCCCAGACCTTCGAAGCACTGGCTGCCCATCGTTTGGGCTGCCAGTAT
TATAACCAGGGCCAGAAAGGAAGGTCGCATTCGTGATGATTTTGCTGTGA
AGACCATCATCGATGAGCTAAATAAGTTTCGTGGTCAGTGTGGACTCCTC
ATCAGCTACGATACCATTAGTGTACCTCTGGTGTACACCCAAGTGGTGAC
CCTGGCGGTGTATTCGTACTTCCTTACCTGCTGCATGGGTCCACAATGGA
CCGATGGCAAGGTGGTGGGGCATACCACATACCTGAACAAGGTGGATCTA
TACTTTCCTGTATTACAACGCTGCAGTTCTTCTT

BO11437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6264-PA 2166 Best1-RA 1..848 17..864 4165 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Best1-RD 2930 CG6264-RD 439..1307 17..884 4275 99.5 Plus
Best1-RC 3074 CG6264-RC 439..1307 17..884 4275 99.5 Plus
Best1-RB 3269 CG6264-RB 439..1307 17..884 4275 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10165089..10165775 884..199 3340 99.4 Minus
3R 32079331 3R 10166124..10166238 198..84 575 100 Minus
3R 32079331 3R 10167249..10167319 87..17 355 100 Minus
3L 28110227 3L 15301956..15302059 675..572 220 80.8 Minus
Blast to na_te.dros performed on 2015-02-12 20:00:06 has no hits.

BO11437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:35 Download gff for BO11437.5prime
Subject Subject Range Query Range Percent Splice Strand
Best1-PA 1..869 17..884 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:23 Download gff for BO11437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6264-PA 1..869 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:52:19 Download gff for BO11437.5prime
Subject Subject Range Query Range Percent Splice Strand
Best1-RB 439..1307 17..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:27:32 Download gff for BO11437.5prime
Subject Subject Range Query Range Percent Splice Strand
Best1-RB 439..1307 17..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:27:32 Download gff for BO11437.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10165089..10165775 199..884 99 <- Minus
3R 10166124..10166234 88..198 100 <- Minus
3R 10167249..10167319 17..87 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:52:19 Download gff for BO11437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5990811..5991497 199..884 99 <- Minus
arm_3R 5991846..5991956 88..198 100 <- Minus
arm_3R 5992971..5993041 17..87 100   Minus

BO11437.complete Sequence

2197 bp assembled on 2008-11-10

GenBank Submission: KX794089

> BO11437.complete
GAAGTTATCAGTCGACATGACAATTACGTACACAGGTGAAGTGGCCACTT
GTCGCGGCTTTGGCTGTTTTCTCAAATTGCTGCTCAGATGGCGAGGAAGC
ATTTACAAACTGGTTTGGCTAGATCTTCTGGCCTTCTTGACCATTTACTA
TGCGATCAACATGGTGTATCGCTTTGGCCTCAACCCCGCACAAAAAGAAA
CCTTTGAGGCCATTGTTCAGTACTGTGATAGTTACAGAGAACTCATACCC
CTGTCCTTCGTGCTTGGTTTCTATGTATCGATTGTGATGACCCGTTGGTG
GAATCAGTACACCTCCATTCCCTGGCCAGATCCCATCGCCGTGTTTGTCA
GCTCGAATGTCCATGGCCAGGATGAGCGAGGACGCATGATGAGGCGAACA
ATAATGCGATATGTGTGCCTTTGCCTGACGATGGTCCTGGCGAATGTTTC
GCCGAGGGTGAAGAAGCGTTTCCCCGGCCTAAATAATCTGGTGGAAGCGG
GTCTGCTAAATGACAATGAAAAGACCATCATCGAGACCATGAACAAGGCC
TTTCCCAGACCTTCGAAGCACTGGCTGCCCATCGTTTGGGCTGCCAGTAT
TATAACCAGGGCCAGAAAGGAAGGTCGCATTCGTGATGATTTTGCTGTGA
AGACCATCATCGATGAGCTAAATAAGTTTCGTGGTCAGTGTGGACTCCTC
ATCAGCTACGATACCATTAGTGTACCTCTGGTGTACACCCAAGTGGTGAC
CCTGGCGGTGTATTCGTACTTCCTTACCTGCTGCATGGGTCAACAATGGA
CCGATGGCAAGGTGGTGGGCAATACCACATACCTGAACAAGGTGGATCTA
TACTTTCCTGTATTTACAACGCTGCAGTTCTTCTTCTACATGGGTTGGCT
CAAGGTGGCCGAGTCGCTGATAAATCCATTTGGCGAAGACGATGATGATT
TTGAGGTCAACTGGATGGTGGATCGCAATCTTCAGGTGTCCTATCTGATC
GTCGACGAGATGCACCATGACCATCCGGAGCTGTTAAAGGATCAGTACTG
GGACGAGGTGTTCCCCAACGAGCTGCCCTACACAATAGCTGCCGAACGAT
TCCGGGAGAATCATCCAGAGCCGTCCACTGCCAAGATCGAGGTGCCCAAG
AATGCGGCCATGCCATCGACAATGTCGTCCGTTCGCATCGATGAAATGGC
CGATGATGCCAGTGGCATTCACTTCTCAGCTGGAAATGGCAAAATGCGCC
TGGATTCCTCGCCCTCGCTGGTGAGCGTTTCGGGAACTCTATCCCGGGTG
AATACGGTGGCCTCGGCCCTCAAACGTTTCCTGAGCCGCGACGATAGCAG
GCCGGGATCGGCAACGCCCAGTCAGGATCAGCCCTACAAATTCCCGGCCA
GCGCCAGCTCGGCGAGTTTATCGGGTGCCGTGGTAGGATCGGCTACATCG
GCCGGAAAACCAGCTGGCAGTCTTAGGATTACGCAGCAAGTGATCGAGGA
GGTGGACGAACAGGCGACCATAACATCCATGAGAGCCAATGATCCACGTC
CCAATGTCATGGACATATTCGCACAAACCTCGTCGGGAGCTGGAACCTCT
GGACCGCTGCAGCCACCACCGGCCCACTCGGAACCGGTGGACATCCCGTC
ACGTCCGCCCTCATACAATCGGGCCCAATCCCAGTACGAACCCAACCTAT
TTCCACCTGGCGGAGTGGATGCACTGCTCAGTACTTCAGCTCCTGCGGGC
GGAAGTCCCCTGCTCCTGTCTAATGCAGCCACTGCACCCAGTTCGCCAGT
GGGCGAGAGCTCCAAGTCCCTATACGATCCACAAAAGGGCGCCAGCCGAG
AGACAGTGGAGAGCATGGACCTGAGGTCCTCCACGGATCTACTCGGCGAT
GCGGCAGTGCAGCCCGAAGACGAGGGCGATGACTTCGATAAGCTGAAGGC
GGAACGCGAGAAGGAGAAACTGATGCGACAGCAAAAGAATCTGGCCAGAA
CTATTAGCACCGCTCCGGGAATGGAAGCCACGGCTGTGCCGATGGTGCCA
ATGGTCCCAGTGAACGTGGCAGTGCAACAGGCACAGCTGCAACCAGTTGC
ATCCAGTGCCGATCTTCTGGCCGGCGGAGATCAGTTCTCCAATTCGACGA
TGAAATCGGAGGACGCCATCAACGGCAGTGCAAGCTTTCTAGACCAT

BO11437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Best1-RA 2166 CG6264-PA 1..2163 17..2179 10815 100 Plus
Best1-RD 2211 CG6264-PD 1..1840 17..1856 9200 100 Plus
Best1-RC 2355 CG6264-PC 1..1183 17..1199 5915 100 Plus
Best1-RD 2211 CG6264-PD 1885..2208 1856..2179 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
Best1-RA 2885 CG6264-RA 439..2601 17..2179 10815 100 Plus
Best1-RD 2930 CG6264-RD 439..2278 17..1856 9200 100 Plus
Best1-RC 3074 CG6264-RC 439..1621 17..1199 5915 100 Plus
Best1-RD 2930 CG6264-RD 2323..2646 1856..2179 1620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10165017..10165775 957..199 3795 100 Minus
3R 32079331 3R 10163199..10163857 1856..1198 3295 100 Minus
3R 32079331 3R 10161988..10162313 2179..1854 1630 100 Minus
3R 32079331 3R 10164718..10164963 1199..954 1230 100 Minus
3R 32079331 3R 10166124..10166238 198..84 575 100 Minus
3R 32079331 3R 10167249..10167319 87..17 355 100 Minus
3L 28110227 3L 15301523..15301717 1066..872 330 77.9 Minus
3L 28110227 3L 15299952..15300034 875..957 235 85.5 Plus
3L 28110227 3L 15301956..15302059 675..572 220 80.8 Minus
3L 28110227 3L 6250631..6250722 964..873 205 81.5 Minus
Blast to na_te.dros performed on 2014-11-27 08:20:28 has no hits.

BO11437.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:06 Download gff for BO11437.complete
Subject Subject Range Query Range Percent Splice Strand
Best1-RA 437..2604 17..2184 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:41 Download gff for BO11437.complete
Subject Subject Range Query Range Percent Splice Strand
Best1-RA 439..2601 17..2181 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:04 Download gff for BO11437.complete
Subject Subject Range Query Range Percent Splice Strand
Best1-RA 437..2599 17..2181 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:17 Download gff for BO11437.complete
Subject Subject Range Query Range Percent Splice Strand
Best1-RA 439..2601 17..2181 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:17 Download gff for BO11437.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10167249..10167319 17..87 100   Minus
3R 10161985..10162310 1857..2181 99 <- Minus
3R 10163199..10163856 1199..1856 100 <- Minus
3R 10164719..10164961 956..1198 100 <- Minus
3R 10165019..10165775 199..955 100 <- Minus
3R 10166124..10166234 88..198 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:41 Download gff for BO11437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5987707..5988032 1857..2181 99 <- Minus
arm_3R 5988921..5989578 1199..1856 100 <- Minus
arm_3R 5990441..5990683 956..1198 100 <- Minus
arm_3R 5990741..5991497 199..955 100 <- Minus
arm_3R 5991846..5991956 88..198 100 <- Minus
arm_3R 5992971..5993041 17..87 100   Minus

BO11437.pep Sequence

Translation from 16 to 2197

> BO11437.pep
MTITYTGEVATCRGFGCFLKLLLRWRGSIYKLVWLDLLAFLTIYYAINMV
YRFGLNPAQKETFEAIVQYCDSYRELIPLSFVLGFYVSIVMTRWWNQYTS
IPWPDPIAVFVSSNVHGQDERGRMMRRTIMRYVCLCLTMVLANVSPRVKK
RFPGLNNLVEAGLLNDNEKTIIETMNKAFPRPSKHWLPIVWAASIITRAR
KEGRIRDDFAVKTIIDELNKFRGQCGLLISYDTISVPLVYTQVVTLAVYS
YFLTCCMGQQWTDGKVVGNTTYLNKVDLYFPVFTTLQFFFYMGWLKVAES
LINPFGEDDDDFEVNWMVDRNLQVSYLIVDEMHHDHPELLKDQYWDEVFP
NELPYTIAAERFRENHPEPSTAKIEVPKNAAMPSTMSSVRIDEMADDASG
IHFSAGNGKMRLDSSPSLVSVSGTLSRVNTVASALKRFLSRDDSRPGSAT
PSQDQPYKFPASASSASLSGAVVGSATSAGKPAGSLRITQQVIEEVDEQA
TITSMRANDPRPNVMDIFAQTSSGAGTSGPLQPPPAHSEPVDIPSRPPSY
NRAQSQYEPNLFPPGGVDALLSTSAPAGGSPLLLSNAATAPSSPVGESSK
SLYDPQKGASRETVESMDLRSSTDLLGDAAVQPEDEGDDFDKLKAEREKE
KLMRQQKNLARTISTAPGMEATAVPMVPMVPVNVAVQQAQLQPVASSADL
LAGGDQFSNSTMKSEDAINGSASFLDH

BO11437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Best1-PA 721 CG6264-PA 1..721 1..721 3743 100 Plus
Best1-PD 736 CG6264-PD 1..736 1..721 3717 98 Plus
Best1-PB 769 CG6264-PB 1..769 1..721 3684 93.8 Plus
Best1-PC 784 CG6264-PC 1..784 1..721 3658 92 Plus
Best3-PA 535 CG12327-PA 1..387 1..392 1389 64 Plus