Clone Sequence Records
BO11437.3prime Sequence
812 bp (721 high quality bases) assembled on 2006-04-19
> BO11437.3prime
ATGGTCTAGAAAGCTTGCACTGCCGTTGATGGCGTCCTCCGATTTCATCG
TCGAATTGGAGAACTGATCTCCGCCGGCCAGAAGATCGGCACTGGATGCA
ACTGGTTGCAGCTGTGCCTGTTGCACTGCCACGTTCACTGGGACCATTGG
CACCATCGGCACAGCCGTGGCTTCCATTCCCGGAGCGGTGCTAATAGTTC
TGGCCAGATTCTTTTGCTGTCGCATCAGTTTCTCCTTCTCGCGTTCCGCC
TTCAGCTTATCGAAGTCATCGCCCTCGTCTTCGGGCTGCACTGCCGCATC
GCCGAGTAGATCCGTGGAGGACCTCAGGTCCATGCTCTCCACTGTCTCTC
GGCTGGCGCCCTTTTGTGGATCGTATAGGGACTTGGAGCTCTCGCCCACT
GGCGAACTGGGTGCAGTGGCTGCATTAGACAGGAGCAGGGGACTTCCGCC
CGCAGGAGCTGAAGTACTGAGCAGTGCATCCACTCCGCCAGGTGGAAATA
GGTTGGGTTCGTACTGGGATTGGGCCCGATTGTATGAGGGCGGACGTGAC
GGGATGTCCACCGGTTCCGAGTGGGCCGGTGGTGGCTGCAGCGGTCCAGA
GGTTCCAGCTCCCGACGAGGTTTGTGCGAATATGTCCATGACATTGGGAC
GTGGATCATTGGCTCTCATGGATGTTATGGTCGCCTGTTCGTCCACCTCC
TCGATCACTTGCTGCGTAATCCTAAGACTGCCAGCTGGTTTTCCGGCCGA
TGTAGCCGATCCTACCACGGCACCCGATAAACTCGCCGAGCTGGCGCTGG
GCGGGAATTTGT
BO11437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6264-PA | 2166 | Best1-RA | 1370..2163 | 812..19 | 3945 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Best1-RB | 3269 | CG6264-RB | 1952..2745 | 812..19 | 3955 | 99.9 | Minus |
Best1-RA | 2885 | CG6264-RA | 1808..2601 | 812..19 | 3955 | 99.9 | Minus |
Best1-RD | 2930 | CG6264-RD | 1808..2278 | 812..342 | 2340 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10163199..10163669 | 342..812 | 2340 | 99.8 | Plus |
3R | 32079331 | 3R | 10161988..10162313 | 19..344 | 1630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:33:55 has no hits.
BO11437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:34 Download gff for
BO11437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Best1-PA | 1370..2166 | 16..812 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:21 Download gff for
BO11437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6264-PA | 1370..2166 | 16..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:11:39 Download gff for
BO11437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Best1-RA | 1808..2606 | 14..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:40 Download gff for
BO11437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Best1-RA | 1808..2606 | 14..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:40 Download gff for
BO11437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10161983..10162310 | 14..341 | 99 | <- | Plus |
3R | 10163199..10163669 | 342..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:11:39 Download gff for
BO11437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5987705..5988032 | 14..341 | 99 | <- | Plus |
arm_3R | 5988921..5989391 | 342..812 | 99 | | Plus |
BO11437.5prime Sequence
884 bp (750 high quality bases) assembled on 2006-04-19
> BO11437.5prime
GAAGTTATCAGTCGACATGACAATTACGTACACAGGTGAAGTGGCCACTT
GTCGCGGCTTTGGCTGTTTTCTCAAATTGCTGCTCAGATGGCGAGGAAGC
ATTTACAAACTGGTTTGGCTAGATCTTCTGGCCTTCTTGACCATTTACTA
TGCGATCAACATGGTGTATCGCTTTGGCCTCAACCCCGCACAAAAAGAAA
CCTTTGAGGCCATTGTTCAGTACTGTGATAGTTACAGAGAACTCATACCC
CTGTCCTTCGTGCTTGGTTTCTATGTATCGATTGTGATGACCCGTTGGTG
GAATCAGTACACCTCCATTCCCTGGCCAGATCCCATCGCCGTGTTTGTCA
GCTCGAATGTCCATGGCCAGGATGAGCGAGGACGCATGATGAGGCGAACA
ATAATGCGATATGTGTGCCTTTGCCTGACGATGGTCCTGGCGAATGTTTC
GCCGAGGGTGAAGAAGCGTTTCCCCGGCCTAAATAATCTGGTGGAAGCGG
GTCTGCTAAATGACAATGAAAAGACCATCATCGAGACCATGAACAAGGCC
TTTCCCAGACCTTCGAAGCACTGGCTGCCCATCGTTTGGGCTGCCAGTAT
TATAACCAGGGCCAGAAAGGAAGGTCGCATTCGTGATGATTTTGCTGTGA
AGACCATCATCGATGAGCTAAATAAGTTTCGTGGTCAGTGTGGACTCCTC
ATCAGCTACGATACCATTAGTGTACCTCTGGTGTACACCCAAGTGGTGAC
CCTGGCGGTGTATTCGTACTTCCTTACCTGCTGCATGGGTCCACAATGGA
CCGATGGCAAGGTGGTGGGGCATACCACATACCTGAACAAGGTGGATCTA
TACTTTCCTGTATTACAACGCTGCAGTTCTTCTT
BO11437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6264-PA | 2166 | Best1-RA | 1..848 | 17..864 | 4165 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Best1-RD | 2930 | CG6264-RD | 439..1307 | 17..884 | 4275 | 99.5 | Plus |
Best1-RC | 3074 | CG6264-RC | 439..1307 | 17..884 | 4275 | 99.5 | Plus |
Best1-RB | 3269 | CG6264-RB | 439..1307 | 17..884 | 4275 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10165089..10165775 | 884..199 | 3340 | 99.4 | Minus |
3R | 32079331 | 3R | 10166124..10166238 | 198..84 | 575 | 100 | Minus |
3R | 32079331 | 3R | 10167249..10167319 | 87..17 | 355 | 100 | Minus |
3L | 28110227 | 3L | 15301956..15302059 | 675..572 | 220 | 80.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:00:06 has no hits.
BO11437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:35 Download gff for
BO11437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Best1-PA | 1..869 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:23 Download gff for
BO11437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6264-PA | 1..869 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:52:19 Download gff for
BO11437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Best1-RB | 439..1307 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:27:32 Download gff for
BO11437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Best1-RB | 439..1307 | 17..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:27:32 Download gff for
BO11437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10165089..10165775 | 199..884 | 99 | <- | Minus |
3R | 10166124..10166234 | 88..198 | 100 | <- | Minus |
3R | 10167249..10167319 | 17..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:52:19 Download gff for
BO11437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5990811..5991497 | 199..884 | 99 | <- | Minus |
arm_3R | 5991846..5991956 | 88..198 | 100 | <- | Minus |
arm_3R | 5992971..5993041 | 17..87 | 100 | | Minus |
BO11437.complete Sequence
2197 bp assembled on 2008-11-10
GenBank Submission: KX794089
> BO11437.complete
GAAGTTATCAGTCGACATGACAATTACGTACACAGGTGAAGTGGCCACTT
GTCGCGGCTTTGGCTGTTTTCTCAAATTGCTGCTCAGATGGCGAGGAAGC
ATTTACAAACTGGTTTGGCTAGATCTTCTGGCCTTCTTGACCATTTACTA
TGCGATCAACATGGTGTATCGCTTTGGCCTCAACCCCGCACAAAAAGAAA
CCTTTGAGGCCATTGTTCAGTACTGTGATAGTTACAGAGAACTCATACCC
CTGTCCTTCGTGCTTGGTTTCTATGTATCGATTGTGATGACCCGTTGGTG
GAATCAGTACACCTCCATTCCCTGGCCAGATCCCATCGCCGTGTTTGTCA
GCTCGAATGTCCATGGCCAGGATGAGCGAGGACGCATGATGAGGCGAACA
ATAATGCGATATGTGTGCCTTTGCCTGACGATGGTCCTGGCGAATGTTTC
GCCGAGGGTGAAGAAGCGTTTCCCCGGCCTAAATAATCTGGTGGAAGCGG
GTCTGCTAAATGACAATGAAAAGACCATCATCGAGACCATGAACAAGGCC
TTTCCCAGACCTTCGAAGCACTGGCTGCCCATCGTTTGGGCTGCCAGTAT
TATAACCAGGGCCAGAAAGGAAGGTCGCATTCGTGATGATTTTGCTGTGA
AGACCATCATCGATGAGCTAAATAAGTTTCGTGGTCAGTGTGGACTCCTC
ATCAGCTACGATACCATTAGTGTACCTCTGGTGTACACCCAAGTGGTGAC
CCTGGCGGTGTATTCGTACTTCCTTACCTGCTGCATGGGTCAACAATGGA
CCGATGGCAAGGTGGTGGGCAATACCACATACCTGAACAAGGTGGATCTA
TACTTTCCTGTATTTACAACGCTGCAGTTCTTCTTCTACATGGGTTGGCT
CAAGGTGGCCGAGTCGCTGATAAATCCATTTGGCGAAGACGATGATGATT
TTGAGGTCAACTGGATGGTGGATCGCAATCTTCAGGTGTCCTATCTGATC
GTCGACGAGATGCACCATGACCATCCGGAGCTGTTAAAGGATCAGTACTG
GGACGAGGTGTTCCCCAACGAGCTGCCCTACACAATAGCTGCCGAACGAT
TCCGGGAGAATCATCCAGAGCCGTCCACTGCCAAGATCGAGGTGCCCAAG
AATGCGGCCATGCCATCGACAATGTCGTCCGTTCGCATCGATGAAATGGC
CGATGATGCCAGTGGCATTCACTTCTCAGCTGGAAATGGCAAAATGCGCC
TGGATTCCTCGCCCTCGCTGGTGAGCGTTTCGGGAACTCTATCCCGGGTG
AATACGGTGGCCTCGGCCCTCAAACGTTTCCTGAGCCGCGACGATAGCAG
GCCGGGATCGGCAACGCCCAGTCAGGATCAGCCCTACAAATTCCCGGCCA
GCGCCAGCTCGGCGAGTTTATCGGGTGCCGTGGTAGGATCGGCTACATCG
GCCGGAAAACCAGCTGGCAGTCTTAGGATTACGCAGCAAGTGATCGAGGA
GGTGGACGAACAGGCGACCATAACATCCATGAGAGCCAATGATCCACGTC
CCAATGTCATGGACATATTCGCACAAACCTCGTCGGGAGCTGGAACCTCT
GGACCGCTGCAGCCACCACCGGCCCACTCGGAACCGGTGGACATCCCGTC
ACGTCCGCCCTCATACAATCGGGCCCAATCCCAGTACGAACCCAACCTAT
TTCCACCTGGCGGAGTGGATGCACTGCTCAGTACTTCAGCTCCTGCGGGC
GGAAGTCCCCTGCTCCTGTCTAATGCAGCCACTGCACCCAGTTCGCCAGT
GGGCGAGAGCTCCAAGTCCCTATACGATCCACAAAAGGGCGCCAGCCGAG
AGACAGTGGAGAGCATGGACCTGAGGTCCTCCACGGATCTACTCGGCGAT
GCGGCAGTGCAGCCCGAAGACGAGGGCGATGACTTCGATAAGCTGAAGGC
GGAACGCGAGAAGGAGAAACTGATGCGACAGCAAAAGAATCTGGCCAGAA
CTATTAGCACCGCTCCGGGAATGGAAGCCACGGCTGTGCCGATGGTGCCA
ATGGTCCCAGTGAACGTGGCAGTGCAACAGGCACAGCTGCAACCAGTTGC
ATCCAGTGCCGATCTTCTGGCCGGCGGAGATCAGTTCTCCAATTCGACGA
TGAAATCGGAGGACGCCATCAACGGCAGTGCAAGCTTTCTAGACCAT
BO11437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Best1-RA | 2166 | CG6264-PA | 1..2163 | 17..2179 | 10815 | 100 | Plus |
Best1-RD | 2211 | CG6264-PD | 1..1840 | 17..1856 | 9200 | 100 | Plus |
Best1-RC | 2355 | CG6264-PC | 1..1183 | 17..1199 | 5915 | 100 | Plus |
Best1-RD | 2211 | CG6264-PD | 1885..2208 | 1856..2179 | 1620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Best1-RA | 2885 | CG6264-RA | 439..2601 | 17..2179 | 10815 | 100 | Plus |
Best1-RD | 2930 | CG6264-RD | 439..2278 | 17..1856 | 9200 | 100 | Plus |
Best1-RC | 3074 | CG6264-RC | 439..1621 | 17..1199 | 5915 | 100 | Plus |
Best1-RD | 2930 | CG6264-RD | 2323..2646 | 1856..2179 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10165017..10165775 | 957..199 | 3795 | 100 | Minus |
3R | 32079331 | 3R | 10163199..10163857 | 1856..1198 | 3295 | 100 | Minus |
3R | 32079331 | 3R | 10161988..10162313 | 2179..1854 | 1630 | 100 | Minus |
3R | 32079331 | 3R | 10164718..10164963 | 1199..954 | 1230 | 100 | Minus |
3R | 32079331 | 3R | 10166124..10166238 | 198..84 | 575 | 100 | Minus |
3R | 32079331 | 3R | 10167249..10167319 | 87..17 | 355 | 100 | Minus |
3L | 28110227 | 3L | 15301523..15301717 | 1066..872 | 330 | 77.9 | Minus |
3L | 28110227 | 3L | 15299952..15300034 | 875..957 | 235 | 85.5 | Plus |
3L | 28110227 | 3L | 15301956..15302059 | 675..572 | 220 | 80.8 | Minus |
3L | 28110227 | 3L | 6250631..6250722 | 964..873 | 205 | 81.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:20:28 has no hits.
BO11437.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:06 Download gff for
BO11437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Best1-RA | 437..2604 | 17..2184 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:41 Download gff for
BO11437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Best1-RA | 439..2601 | 17..2181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:04 Download gff for
BO11437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Best1-RA | 437..2599 | 17..2181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:17 Download gff for
BO11437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Best1-RA | 439..2601 | 17..2181 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:17 Download gff for
BO11437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10167249..10167319 | 17..87 | 100 | | Minus |
3R | 10161985..10162310 | 1857..2181 | 99 | <- | Minus |
3R | 10163199..10163856 | 1199..1856 | 100 | <- | Minus |
3R | 10164719..10164961 | 956..1198 | 100 | <- | Minus |
3R | 10165019..10165775 | 199..955 | 100 | <- | Minus |
3R | 10166124..10166234 | 88..198 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:41 Download gff for
BO11437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5987707..5988032 | 1857..2181 | 99 | <- | Minus |
arm_3R | 5988921..5989578 | 1199..1856 | 100 | <- | Minus |
arm_3R | 5990441..5990683 | 956..1198 | 100 | <- | Minus |
arm_3R | 5990741..5991497 | 199..955 | 100 | <- | Minus |
arm_3R | 5991846..5991956 | 88..198 | 100 | <- | Minus |
arm_3R | 5992971..5993041 | 17..87 | 100 | | Minus |
BO11437.pep Sequence
Translation from 16 to 2197
> BO11437.pep
MTITYTGEVATCRGFGCFLKLLLRWRGSIYKLVWLDLLAFLTIYYAINMV
YRFGLNPAQKETFEAIVQYCDSYRELIPLSFVLGFYVSIVMTRWWNQYTS
IPWPDPIAVFVSSNVHGQDERGRMMRRTIMRYVCLCLTMVLANVSPRVKK
RFPGLNNLVEAGLLNDNEKTIIETMNKAFPRPSKHWLPIVWAASIITRAR
KEGRIRDDFAVKTIIDELNKFRGQCGLLISYDTISVPLVYTQVVTLAVYS
YFLTCCMGQQWTDGKVVGNTTYLNKVDLYFPVFTTLQFFFYMGWLKVAES
LINPFGEDDDDFEVNWMVDRNLQVSYLIVDEMHHDHPELLKDQYWDEVFP
NELPYTIAAERFRENHPEPSTAKIEVPKNAAMPSTMSSVRIDEMADDASG
IHFSAGNGKMRLDSSPSLVSVSGTLSRVNTVASALKRFLSRDDSRPGSAT
PSQDQPYKFPASASSASLSGAVVGSATSAGKPAGSLRITQQVIEEVDEQA
TITSMRANDPRPNVMDIFAQTSSGAGTSGPLQPPPAHSEPVDIPSRPPSY
NRAQSQYEPNLFPPGGVDALLSTSAPAGGSPLLLSNAATAPSSPVGESSK
SLYDPQKGASRETVESMDLRSSTDLLGDAAVQPEDEGDDFDKLKAEREKE
KLMRQQKNLARTISTAPGMEATAVPMVPMVPVNVAVQQAQLQPVASSADL
LAGGDQFSNSTMKSEDAINGSASFLDH
BO11437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Best1-PA | 721 | CG6264-PA | 1..721 | 1..721 | 3743 | 100 | Plus |
Best1-PD | 736 | CG6264-PD | 1..736 | 1..721 | 3717 | 98 | Plus |
Best1-PB | 769 | CG6264-PB | 1..769 | 1..721 | 3684 | 93.8 | Plus |
Best1-PC | 784 | CG6264-PC | 1..784 | 1..721 | 3658 | 92 | Plus |
Best3-PA | 535 | CG12327-PA | 1..387 | 1..392 | 1389 | 64 | Plus |