Clone Sequence Records
BO11444.3prime Sequence
815 bp (724 high quality bases) assembled on 2006-04-19
> BO11444.3prime
ATGGTCTAGAAAGCTTGCGCAACCCATCGATTTAGCTTTCTGTAATTTTC
TTCTTAAGATTTTTAGCACAATGGTGCCCTCTCTTACGTTCTTAAAGAGT
CCTATGGTTTCGGCATGACTCATGCCCTGCACAGAGTTTCCATTGATCTC
TACAATCTCGTCGCCCGCTTGCAGTGTGCCATCATCGGCTGCCTGGCCTG
AGGGAAACACGGTCTTTACAAAAATTCCCATGTTGCCCTTTGGCGAATCT
CGACCTCCCACTATGCTGAAGCCCAACGATTTCAGTCCAGGTCCCTTAAA
GAAGGTTATAGTCTTCGGGGTGCAACGTCCACTACCCTCGCTCATCGACG
CACGGATGACCTCCGCCATTTCCTCGTCGCGTATTGTTAGCTTGGCCACC
GGAAGCGATGGCCTGTGATGCATTAGGGCAGCGGCTGGCGGTGCCAGGGA
GGAGCCGGCACCCGCTGATGTGGATGCCGAAGCTGGTGAGGATGAGGCGT
TAACATAGGGATTAGGCGAGAACAATGAGACGCTCTTTGGCGAGTGCTTG
ATGTACAGTGATTGGTGTGTCTGTTGCTGGTTTTGCTGCTGTTGCTGCTG
GTTAGTGAGATCAGTGGTTGTGGTAGCTGTAGAGGATGGGGTGTTAGCGA
CTCCTTCTCCGACGGTTAGACTGTTAGGCGGTGCCTGCATGAACAGACTA
AGGCGAGACGAACTCAGCCGCGAGTGGGCAAATCGGAGCGAGCGGTAATG
CGAGTTGGCCAGATTGATGGAGTTTCTGGCGTAGTGAGTGCGCTGGCCAA
ATTGCTGCGGGTTTC
BO11444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6741-PB | 3990 | a-RB | 3193..3987 | 813..19 | 3975 | 100 | Minus |
| CG6741-PC | 3990 | a-RC | 3193..3987 | 813..19 | 3975 | 100 | Minus |
| CG6741-PA | 3990 | a-RA | 3193..3987 | 813..19 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a-RA | 4847 | CG6741-RA | 3743..4537 | 813..19 | 3975 | 100 | Minus |
| a-RC | 4665 | CG6741-RC | 3561..4355 | 813..19 | 3975 | 100 | Minus |
| a-RB | 5173 | CG6741-RB | 4069..4863 | 813..19 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22171508..22171987 | 813..334 | 2400 | 100 | Minus |
| 2R | 25286936 | 2R | 22172081..22172253 | 336..164 | 865 | 100 | Minus |
| 2R | 25286936 | 2R | 22172303..22172433 | 177..47 | 610 | 97.7 | Minus |
Blast to na_te.dros performed 2015-02-12 04:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6828 | 660..572 | 140 | 64.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2390 | 607..535 | 135 | 69.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6848 | 652..532 | 131 | 59.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1161 | 656..549 | 130 | 64.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2409 | 642..544 | 129 | 65.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6820 | 629..548 | 127 | 66.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6808 | 647..548 | 121 | 62.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6836..6920 | 629..544 | 121 | 63.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2844 | 599..540 | 120 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1591 | 638..569 | 118 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6787 | 602..548 | 117 | 73.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6871 | 602..562 | 115 | 75.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5638..5695 | 611..557 | 112 | 69 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6756 | 602..563 | 112 | 80 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1029..1151 | 659..544 | 112 | 58.5 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3203..3323 | 676..562 | 112 | 59.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2407 | 604..572 | 111 | 81.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2410 | 602..563 | 110 | 75 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2638..2696 | 602..546 | 110 | 67.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1125..1158 | 602..568 | 109 | 82.9 | Minus |
BO11444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:42 Download gff for
BO11444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6741-PA | 3192..3990 | 18..815 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:32 Download gff for
BO11444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6741-PA | 3192..3990 | 18..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:27:50 Download gff for
BO11444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RB | 4068..4863 | 19..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:12:28 Download gff for
BO11444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RB | 4068..4863 | 19..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:12:28 Download gff for
BO11444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22171507..22171985 | 336..815 | 99 | -> | Minus |
| 2R | 22172082..22172252 | 165..335 | 100 | -> | Minus |
| 2R | 22172316..22172433 | 47..164 | 100 | -> | Minus |
| 2R | 22172497..22172524 | 19..46 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:27:50 Download gff for
BO11444.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18059012..18059490 | 336..815 | 99 | -> | Minus |
| arm_2R | 18059587..18059757 | 165..335 | 100 | -> | Minus |
| arm_2R | 18059821..18059938 | 47..164 | 100 | -> | Minus |
| arm_2R | 18060002..18060029 | 19..46 | 100 | | Minus |
BO11444.5prime Sequence
760 bp (726 high quality bases) assembled on 2006-04-19
> BO11444.5prime
GAAGTTATCAGTCGACATGCGTCTCTTCAAAACGCGCAAATCCACGGATA
CCTACAGCACACTAGCCGCGCAGCAACAGCAACAGCAGCAGCAGCAACAA
CAACATCAAGCGGAAGGCAGCAACATTTCCCACAGCAGCAACAGCAGCAG
CAACAAGAGTCACACACCGGCAACATGCAGCAACAGACTGAACAAGAGCA
TTGTGAGCAGCACCAGCATATCGTCATCGCTGCCTGATCTGCATGACAAG
TCGCCCGTCATGATCCTCAGCTGCACCACCCTGGCCAGCAATGGAGCCAC
CGCCACGGCAGCGGTCACAGCAACAGCCACCGGCACAGCAGCAACATCTG
GCGGCTCGCTGCAGCAGCAACAACAGCAGCATCTGCAACACCAGCAGCAG
CAGCAGCCGTTACGCACGGCCACGCCCACGTGTCTGCTGAGTGGCCGTCA
GACGCCATCGGCCATATCGGTGATGTCGCTCCAAGAGGCCACCAGTCTGC
ACCGCCAGCAACAGCAGCCACACCAGCCACCCACCATCTACGTGCCGGTG
CCTACGAAACTTGGCAACAATGTCAACACTGGCAACAGCTCGGCCACTCT
GCTGCTCAGCTATGGCAGCACCAGCAGCATCGCCAACCTGCAACAGCAGC
AGCAGCAGCATGCCGCCCAGTACCAGCAGTATGTTGCACAGCGGCTGCAC
GCCGCTTCCAGCAGTTGTTTGTACGAGAAGGGGTCGAATGCCAGCGGTGG
GGCGAGCAGC
BO11444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6741-PB | 3990 | a-RB | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG6741-PC | 3990 | a-RC | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG6741-PA | 3990 | a-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG32975-PA | 1713 | nAcRalpha-34E-RA | 492..529 | 25..62 | 165 | 97.3 | Plus |
| CG32975-PC | 2361 | nAcRalpha-34E-RC | 492..529 | 25..62 | 165 | 97.3 | Plus |
| CG32975-PB | 2427 | nAcRalpha-34E-RB | 492..529 | 25..62 | 165 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a-RD | 3897 | CG6741-RD | 327..1070 | 17..760 | 3720 | 100 | Plus |
| a-RA | 4847 | CG6741-RA | 551..1294 | 17..760 | 3720 | 100 | Plus |
| a-RC | 4665 | CG6741-RC | 369..1112 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22162920..22163663 | 17..760 | 3720 | 100 | Plus |
| 2L | 23513712 | 2L | 14062188..14062238 | 16..66 | 195 | 92.2 | Plus |
Blast to na_te.dros performed 2015-02-12 13:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2186..2469 | 131..413 | 218 | 59.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7055..7135 | 317..400 | 133 | 67.1 | Plus |
BO11444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:43 Download gff for
BO11444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6741-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:33 Download gff for
BO11444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6741-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:25:06 Download gff for
BO11444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RC | 363..1112 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:33:38 Download gff for
BO11444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RC | 363..1112 | 9..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:33:38 Download gff for
BO11444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22162914..22163663 | 9..760 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:25:06 Download gff for
BO11444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18050419..18051168 | 9..760 | 99 | | Plus |
BO11444.complete Sequence
4021 bp assembled on 2008-11-10
GenBank Submission: KX795322
> BO11444.complete
GAAGTTATCAGTCGACATGCGTCTCTTCAAAACGCGCAAATCCACGGATA
CCTACAGCACACTAGCCGCGCAGCAACAGCAACAGCAGCAGCAGCAACAA
CAACATCAAGCGGAAGGCAGCAACATTTCCCACAGCAGCAACAGCAGCAG
CAACAAGAGTCACACACCGGCAACATGCAGCAACAGACTGAACAAGAGCA
TTGTGAGCAGCACCAGCATATCGTCATCGCTGCCTGATCTGCATGACAAG
TCGCCCGTCATGATCCTCAGCTGCACCACCCTGGCCAGCAATGGAGCCAC
CGCCACGGCAGCGGTCACAGCAACAGCCACCGGCACAGCAGCAACATCTG
GCGGCTCGCTGCAGCAGCAACAACAGCAGCATCTGCAACACCAGCAGCAG
CAGCAGCCGTTACGCACGGCCACGCCCACGTGTCTGCTGAGTGGCCGTCA
GACGCCATCGGCCATATCGGTGATGTCGCTCCAAGAGGCCACCAGTCTGC
ACCGCCAGCAACAGCAGCCACACCAGCCACCCACCATCTACGTGCCGGTG
CCTACGAAACTTGGCAACAATGTCAACACTGGCAACAGCTCGGCCACTCT
GCTGCTCAGCTATGGCAGCACCAGCAGCATCGCCAACCTGCAACAGCAGC
AGCAGCAGCATGCCGCCCAGTACCAGCAGTATGTTGCACAGCGGCTGCAC
GCCGCTTCCAGCAGTTGTTTGTACGAGAAGGGGTCGAATGCCAGCGGTGG
GGCGAGCAGCAACAAAAGCAGTCTATCCCTGACCCCAAATGGTCACTTGC
CCGACTACAAGTTGGTGACAGCGATGCCAGTTGTTGTCCTGGACGATGAA
CACAAATCCAATTCATTGCCGGCCACTGAAGCGAGTCGCAACAGCAACAG
CAGCAGCAACATGAACGGCAGCAGCAACAGCAACAGCCTTGACGTCAGCA
ACAGCAACTCGCATTCGGGGAGCTCCACTTCTTTGGCCAGCACCACGAGA
AATGTTTTCACCTGGGGCAAGCGCATGAGTCGCAAACTGGATTTGCTGAA
GCGGAGTGACTCGCCCGCCGCCGCCCACAAATCGCATTCGGATTTGAGGA
GTCTGTTCCACTCGCCAACGCACCACAAGAGTGGATCCGGTGGATCCAGC
GGACCCAGTTCGGCGAAGGCATCGGCCTCACCCACTGGCGGCCATCAGAA
CAGCTCCGGCTCCACGACCAGCACCCTCAAGAAGTGCAAGTCGGGGCCCA
TCGAGACCATCAAGCAGCGACACCAGCAGCAGCAGCAGCAGCAGCAATCG
GTTCAGGATGTGGGCACGGGACAGAGCCAGAGTGCTCAGTCCACGCCCAC
GCATCAGTTCCAGGCGGCCGCCCGCCCACAGAAAGCGCTAAAGAACTTCT
TCCATAGGATCGGGTCCACCGGCATGCTGAACCATCGCTCCCACAATCTC
CTTAAGGCTTCGGAGGCGGCTCAACAGGCCACCCCGGCAGCCACCACATT
GTATAGGAGCAGCTCCACTAGCCAGCTGTCCAGCAGCTCCTATGTGAAGT
GCGACGATCCCACCGAGGGACTGAATCTTCAGAGGGAGCAGCGGGAACAG
CGTCTTCCGCGGATCGCCAGCCTGAAGTCCAGTAGCTGCGATGACATAGC
CAAGGTGAGCAGTTGCCTGACGGCCAGCACAAGTAGTGGCAGTGCCGCAG
GCAGCTTGGGCTCTCCTCCAAGTAGTGCAGCAGCTGGTGGAGGCGGAACT
GCAAACAGCGGCCAACACGATCCCTCGCGTCGTGGTGCATTTCCTTACGC
CTTCCTGCGATCACGTCTCTCCGTTTTGCCAGAGGAGAACCACGGAAATG
TACCAGGACACCTGAAGCAACAAATACAGCGGCAACGGGAGCAGCACCAG
CAGCATCAGAGGGATCTCCTCCAGCAGGAGCAGACATCGTCGCCCCTTCC
CCAGCGCCGATCCCCCGAACAGGCGATGCTGAACAATGTGTCACGCAACG
ACAGCATCACCTCCAAGGACTGGGAACCACTTTACCAAAGATTAAGTAGT
TGTCTAAGTTCAAACGAGTCCGGCTACGACAGCGATGGGGGTGCGACGGG
AGCCCGACTGGGCAATAATCTGAGCATCTCCGGCGGAGATACCGAATCTA
TTGCCTCGGGCACACTCAAGCGTAACTCGCTCATCTCCCTCAGCTCCTCG
GAGGGCGTTGGAATGGGCATGGGCATGAGTCTGGGACTGGGTGCCCCATC
GACGAGGAACAGCAGCATCTGCAGTGCTCCCGTGTCGCTGGGTGGCTATA
ACTACGACTATGAGACGGAGACGATACGGCGACGATTCAGGCAGGTTAAG
CTGGAGCGCAAGTGCCAAGAGGACTACATCGGAATTGTCCTGTCGCCCAA
AACGGTGATGACCAATAGCAATGAGCAGCAGTACAGGTATCTCATCGTGG
AACTGGAACCCTATGGCATGGCCCAAAAGGATGGTCGCCTTCGCCTGGGT
GACGAGATCGTCAACGTAAATGGAAAACACCTGCGAGGCATTCAATCCTT
TGCAGAGGTTCAGCGCCTGTTGAGCAGCTTTGTGGACAACTGTATCGACC
TGGTGATTGCTCACGATGAGGTGACGACGGTAACTGATTTCTACACCAAA
ATCCGTATCGATGGGATGAGCACGCAGCGCCATCGGCTGAGTTATGTGCA
ACGCACACAGAGCACAGACAGTCTGAGCAGCATGCAGAGTCTGCAGCTGC
AGCAGGAGAGGATTCAGGGTCACAATACGGAACAGGAGCAGGAGGCCCAG
GGCGAGGATCAGTGCGATGCGCGTTCAATGGCCAGCGTCAGCACAATGCC
CACTCCGATGCCGCTGATGCAGCATCGTCGGAGCTCCACGCCCAGGCACT
CACTGGACGTCGGTGCGCCGGAGCATGAGCTCCTCAGGAGGCGGGCGCGC
AGCTCCTCAGGTCAGCGCAGCTTGGCTCTAACACCGACCCCACTCTTTGC
CAGCGGCAGCAGCAGTTGCTCCTCCTCCCCTAACCACCGGTTGCTGGATA
ACGAGAACGACCCTGCTAACGACACCGATTCCTATACGCCAGTGTATGCA
AATCGGGCGGCAAGCGTGTGCGTGGCCTCCTCCCTGGCGGACGATGAGAA
GTGGCAGTTACTGGCCCGAAAGCGCTGCTCGGAGGGTTCCGCCCTATCCG
CTACACCGAACCCGCAGCAATTTGGCCAGCGCACTCACTACGCCAGAAAC
TCCATCAATCTGGCCAACTCGCATTACCGCTCGCTCCGATTTGCCCACTC
GCGGCTGAGTTCGTCTCGCCTTAGTCTGTTCATGCAGGCACCGCCTAACA
GTCTAACCGTCGGAGAAGGAGTCGCTAACACCCCATCCTCTACAGCTACC
ACAACCACTGATCTCACTAACCAGCAGCAACAGCAGCAAAACCAGCAACA
GACACACCAATCACTGTACATCAAGCACTCGCCAAAGAGCGTCTCATTGT
TCTCGCCTAATCCCTATGTTAACGCCTCATCCTCACCAGCTTCGGCATCC
ACATCAGCGGGTGCCGGCTCCTCCCTGGCACCGCCAGCCGCTGCCCTAAT
GCATCACAGGCCATCGCTTCCGGTGGCCAAGCTAACAATACGCGACGAGG
AAATGGCGGAGGTCATCCGTGCGTCGATGAGCGAGGGTAGTGGACGTTGC
ACCCCGAAGACTATAACCTTCTTTAAGGGACCTGGACTGAAATCGTTGGG
CTTCAGCATAGTGGGAGGTCGAGATTCGCCAAAGGGCAACATGGGAATTT
TTGTAAAGACCGTGTTTCCCTCAGGCCAGGCAGCCGATGATGGCACACTG
CAAGCGGGCGACGAGATTGTAGAGATCAATGGAAACTCTGTGCAGGGCAT
GAGTCATGCCGAAACCATAGGACTCTTTAAGAACGTAAGAGAGGGCACCA
TTGTGCTAAAAATCTTAAGAAGAAAATTACAGAAAGCTAAATCGATGGGT
TGCGCAAGCTTTCTAGACCAT
BO11444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a-RA | 3990 | CG6741-PA | 1..3987 | 17..4003 | 19935 | 100 | Plus |
| a-RC | 3990 | CG6741-PC | 1..3987 | 17..4003 | 19935 | 100 | Plus |
| a-RB | 3990 | CG6741-PB | 1..3987 | 17..4003 | 19935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a-RA | 4847 | CG6741-RA | 551..4537 | 17..4003 | 19935 | 100 | Plus |
| a-RC | 4665 | CG6741-RC | 369..4355 | 17..4003 | 19935 | 100 | Plus |
| a-RB | 5173 | CG6741-RB | 877..4863 | 17..4003 | 19935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22169243..22170718 | 1004..2479 | 7380 | 100 | Plus |
| 2R | 25286936 | 2R | 22170778..22171987 | 2479..3688 | 6050 | 100 | Plus |
| 2R | 25286936 | 2R | 22162920..22163696 | 17..793 | 3885 | 100 | Plus |
| 2R | 25286936 | 2R | 22164776..22164989 | 791..1004 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 22172081..22172253 | 3686..3858 | 865 | 100 | Plus |
| 2R | 25286936 | 2R | 22172303..22172433 | 3845..3975 | 610 | 97.7 | Plus |
| 2L | 23513712 | 2L | 14062188..14062238 | 16..66 | 195 | 92.2 | Plus |
Blast to na_te.dros performed 2014-11-27 01:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2186..2469 | 131..413 | 218 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2402 | 1866..1933 | 160 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6828 | 3362..3450 | 140 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2390 | 3415..3487 | 135 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6900 | 1852..1926 | 132 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6848 | 3370..3490 | 131 | 59.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1161 | 3366..3473 | 130 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2409 | 3380..3478 | 129 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6820 | 3393..3474 | 127 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2903..2971 | 1836..1905 | 122 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6808 | 3375..3474 | 121 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6836..6920 | 3393..3478 | 121 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2844 | 3423..3482 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1591 | 3384..3453 | 118 | 66.7 | Plus |
BO11444.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:44 Download gff for
BO11444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RA | 522..4514 | 9..4003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:34 Download gff for
BO11444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RB | 877..4863 | 17..4005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:01 Download gff for
BO11444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RA | 528..4514 | 17..4005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:57 Download gff for
BO11444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a-RB | 877..4863 | 17..4005 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:57 Download gff for
BO11444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22172082..22172252 | 3687..3857 | 100 | -> | Plus |
| 2R | 22172316..22172433 | 3858..3975 | 100 | -> | Plus |
| 2R | 22172497..22172524 | 3976..4005 | 93 | | Plus |
| 2R | 22162920..22163694 | 17..791 | 100 | -> | Plus |
| 2R | 22164777..22164989 | 792..1004 | 100 | -> | Plus |
| 2R | 22169244..22170717 | 1005..2478 | 100 | -> | Plus |
| 2R | 22170778..22171985 | 2479..3686 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:34 Download gff for
BO11444.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18059587..18059757 | 3687..3857 | 100 | -> | Plus |
| arm_2R | 18059821..18059938 | 3858..3975 | 100 | -> | Plus |
| arm_2R | 18060002..18060029 | 3976..4005 | 93 | | Plus |
| arm_2R | 18050425..18051199 | 17..791 | 100 | -> | Plus |
| arm_2R | 18052282..18052494 | 792..1004 | 100 | -> | Plus |
| arm_2R | 18056749..18058222 | 1005..2478 | 100 | -> | Plus |
| arm_2R | 18058283..18059490 | 2479..3686 | 100 | -> | Plus |
BO11444.pep Sequence
Translation from 16 to 4021
> BO11444.pep
MRLFKTRKSTDTYSTLAAQQQQQQQQQQQHQAEGSNISHSSNSSSNKSHT
PATCSNRLNKSIVSSTSISSSLPDLHDKSPVMILSCTTLASNGATATAAV
TATATGTAATSGGSLQQQQQQHLQHQQQQQPLRTATPTCLLSGRQTPSAI
SVMSLQEATSLHRQQQQPHQPPTIYVPVPTKLGNNVNTGNSSATLLLSYG
STSSIANLQQQQQQHAAQYQQYVAQRLHAASSSCLYEKGSNASGGASSNK
SSLSLTPNGHLPDYKLVTAMPVVVLDDEHKSNSLPATEASRNSNSSSNMN
GSSNSNSLDVSNSNSHSGSSTSLASTTRNVFTWGKRMSRKLDLLKRSDSP
AAAHKSHSDLRSLFHSPTHHKSGSGGSSGPSSAKASASPTGGHQNSSGST
TSTLKKCKSGPIETIKQRHQQQQQQQQSVQDVGTGQSQSAQSTPTHQFQA
AARPQKALKNFFHRIGSTGMLNHRSHNLLKASEAAQQATPAATTLYRSSS
TSQLSSSSYVKCDDPTEGLNLQREQREQRLPRIASLKSSSCDDIAKVSSC
LTASTSSGSAAGSLGSPPSSAAAGGGGTANSGQHDPSRRGAFPYAFLRSR
LSVLPEENHGNVPGHLKQQIQRQREQHQQHQRDLLQQEQTSSPLPQRRSP
EQAMLNNVSRNDSITSKDWEPLYQRLSSCLSSNESGYDSDGGATGARLGN
NLSISGGDTESIASGTLKRNSLISLSSSEGVGMGMGMSLGLGAPSTRNSS
ICSAPVSLGGYNYDYETETIRRRFRQVKLERKCQEDYIGIVLSPKTVMTN
SNEQQYRYLIVELEPYGMAQKDGRLRLGDEIVNVNGKHLRGIQSFAEVQR
LLSSFVDNCIDLVIAHDEVTTVTDFYTKIRIDGMSTQRHRLSYVQRTQST
DSLSSMQSLQLQQERIQGHNTEQEQEAQGEDQCDARSMASVSTMPTPMPL
MQHRRSSTPRHSLDVGAPEHELLRRRARSSSGQRSLALTPTPLFASGSSS
CSSSPNHRLLDNENDPANDTDSYTPVYANRAASVCVASSLADDEKWQLLA
RKRCSEGSALSATPNPQQFGQRTHYARNSINLANSHYRSLRFAHSRLSSS
RLSLFMQAPPNSLTVGEGVANTPSSTATTTTDLTNQQQQQQNQQQTHQSL
YIKHSPKSVSLFSPNPYVNASSSPASASTSAGAGSSLAPPAAALMHHRPS
LPVAKLTIRDEEMAEVIRASMSEGSGRCTPKTITFFKGPGLKSLGFSIVG
GRDSPKGNMGIFVKTVFPSGQAADDGTLQAGDEIVEINGNSVQGMSHAET
IGLFKNVREGTIVLKILRRKLQKAKSMGCASFLDH
BO11444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a-PA | 1329 | CG6741-PA | 1..1329 | 1..1329 | 6757 | 100 | Plus |
| a-PC | 1329 | CG6741-PC | 1..1329 | 1..1329 | 6757 | 100 | Plus |
| a-PB | 1329 | CG6741-PB | 1..1329 | 1..1329 | 6757 | 100 | Plus |
| a-PD | 1087 | CG6741-PD | 1..982 | 1..982 | 4988 | 100 | Plus |
| a-PD | 1087 | CG6741-PD | 870..1087 | 1128..1329 | 577 | 59.4 | Plus |
| Spt20-PC | 1646 | CG17689-PC | 1094..1634 | 19..578 | 216 | 23.5 | Plus |
