Clone Sequence Records
BO11445.complete Sequence
4426 bp assembled on 2010-04-13
GenBank Submission: KX798692
> BO11445.complete
GAAGTTATCAGTCGACATGCGTAGGAGGCGTGGCACGCCCCTGGGCGTCA
GCTGGACGAACTGCGTCCTGCTCCTGGCCACCGGTCTGCTGGTGGTGCTC
ATTTCGGTGCACGCCAAGAACCCCAGGCCGCATCGAGGACTACCCGCCCC
GGCTCCTGCACCAGTTCCTGCATCCGTAGATCAGGTGGCAACTGAAAATG
CCCACAGGCGGGAACCTACCGTCGATGGGAGTGTACTTCAACGGCTATCG
GGTTCAGATAGGGCTGTTGACGAGGATGAGGATGTCGATGAGGATGAGGA
TGAGGGGCTAAAGCACCAGCACCTCGAGCATCGGCAACAATTTGACGCAT
ATCTGGGCACAATCCGACGGCTGCGTCGTCCATACCGCAGCAAATACACC
ATCGAGCAGCTGATGCGACTGCATGTGACACCAAAGGTATCCGGAGACAT
TGACATGGATCCCTGCAAGGCGGGCGGTTTCATGGGCGACATTGCCCTGC
CGGAGGGTGATTCCGGCCCGGTGGTTGCCCACACGCCCATCGACGACGAG
GAGCAGGAGCGCCAGGAGGTGGAGCAGCTGCTGGCTGACTCGCCCAGCCC
GGTTCACGACCCCCCTTCCGTTTCCGGTGCGGCCAACTCAGGGCCGACCA
AGTTCAATGCCACCTTCCAGCTGGATCTGGAGAAGCTCAAGCAGGAGGTC
TACCACGAGGGCCTACAGGTGGAGGAGGAGGGCCTCACCGACATCATCCG
CAAGAAGACCAAGCTGCCCAGCTCAGGTCCGGTCAACCTGAAGGCAGGAC
AAAGCCAGTCACAGAGTCAGAGTGCCAATGAACCCGTGAAGCCCGGTTCG
GAATCGCCCTCCGATTACGCGCAAGCATCCAGCTACAAGAATGAGGTACT
GCCTCCGTCGGAGCAGCGAATCCATACGGACAAGCCGGCACGGTTGACGC
TGGCCGAGATTGGACCCAAGTTCAGCAACAAGACGCAGTCGCTGCACCGT
AATGTGGACACACGCAAGATTCAGTCGGACAACAAGGACATCGAGGACGA
TTCGGGCAACAATTTTGTGGCCGAGAGGAGGCCGTCACAGATTGTGCCCA
CTTCCTTGCCGGAGCAGCGATCCACTCCGGCTCACGTGTACAGCAATGCC
GGAGGCAATGGCATGCAGTTGGACGACGAGGTGGACTTCTTGCATTCCCG
TGGAGTCGTGAGGAGGCGTCACAGGCGAGGACCAAAACAGCGAAGGAGCA
ACCAGCACTTGGAGCACGAGGTCAAGCTGCAGAGATTGAGGGAGGAGCTC
AGCCGTCCGGTCATCGAGGCCCACCATCACCAGTCGCACCACCAGAAGCA
GGCGCAGCACCGCCAGCACCACCAGAGCCACCATCGAAAGAAGCACCGTC
GACAGCAGCAGCACCATCGTCGACGTGGCCAGAGCACCACGCAATATGTG
AACCATTCCCCGCCAGGATTCAATCAATCGCAGCAGGCCCAACAGCAGTC
AGTGCCTGAAATGGATTTGTTGAAAGCGGAAACGTCCAAGGATGAGGAGC
CACTGCGTCATCGGGTGGCCCGTGCTGTCACCGCCAAAAAGGAACGCATC
TGGGACTATGGGGTGATTCCGTACGAGATCGATGGCAACTTCAGTGGCAT
CCATAAGGCGCTTTTCAAACTGGCCATGCGCCATTGGGAGAACTCCACGT
GTATCAAGTTCGTAGAGCGCGACCCGGAGATCCATCCCAATTACATAGTG
TTCACGGTTCGCAGCTGCGGATGCTGCTCATTTGTGGGCAAACGTGGAAA
TGGACCGCAGGCCATCTCAATTGGTAGAAATTGCGATAAATTTGGCATTG
TGGTCCATGAGTTGGGTCACGTGGTGGGCTTCTGGCACGAGCACACGCGT
CCGGATCGGGAAAAGCACGTGGTGATCGAGCATAACAACATTATGAAGGG
CCAGGACTATAACTTCAATATGCTATCCCCCGATGAAGTGGACTCGCTGG
GCATGGCCTACGACTATGATTCGATTATGCACTACGCACGGAACACCTTC
TCCAAGGGCACCTACCTGGACACCATCCTGCCCATCGAGATGAAGGGTCG
CAAGCGTCCTGAAATAGGCCAGCGGTTGCGCCTCAGCCAGGGTGACATTG
CGCAGGCGAATCTTCTGTACAAGTGTCCAAAGTGCGGAAGAACCTTTCAG
GAGAGTTCCGGCATCTTTGCCTCACCATCTCATTACACGGCCGGAGCTTT
GAGCAATGAGACGGAGCACTGCGAGTGGCGGATTACAGCGACATACGGAG
AAAGAGTGGAACTGAAACTGGAGAATATGAACATCTTTAAGTCAAACAAC
TGCGAGACGGACTACCTAGAGATTCGGGATGGCTACTTCGAGAAGTCACC
GCTTATCGGACGCTTCTGCGGCAAGGTGGACAAGGAGGTGATCCGCACGG
AGTCCAGTCGCATGCTGCTCACCTATGTGAATACACACCGCATCGAGGGC
TTCAGGGGCTTCAAGGCGGAGTTCGATGTTGTTTGCGGTGGCGAGTTGTC
CGTGGACGATGCCGTTGGCCGTTTGGAGTCGCCCAACTATCCACTGGACT
ATTTGCCCAACAAGGAATGTGTGTGGAAAATAACTGTGCCCGAAAGCTAC
CAGGTGGCGTTGAAATTCCAGTCCTTCGAAGTGGAGAACCACGACAGCTG
TGTCTACGACTACGTCGAGGTCCGGGACGGTCCTGGCCAGGATGCGCCGC
TAATTGGCGTTTTCTGTGGCTACAAGCCGCCGCCGAACATGAAGTCAAGT
GGCAATTCGATGTACGTGAAATTCGTGTCGGACACATCGGTGCAGAAGGC
GGGCTTCTCGGCCGTGTTCATGAAGGAGGTGGACGAGTGCGAGACCCAGA
ACCACGGCTGCGAGCACGAATGCATCAACACCCTCGGTGGCTACGAGTGC
AGCTGCCGCATCGGATTCGAGCTCCACAGCGACAAGAAGCACTGCGAAGA
TGCCTGTGGCGGTGTCATCGAGTATCCGAATGGCACCATTACCTCGCCCT
CGTTCCCCGAGATGTACCCTCTGCTGAAGGAGTGCATCTGGGAGATTGTG
GCGCCACCGAAGCACAGGATATCGCTAAACTTCACCCACTTCGACCTTGA
GGGCACGGCGCATCAGCAATCGGACTGTGGCTACGATTCGGTCACAGTCT
ACTCAAAACTGGGCGAGAATCGTCTGAAGAGGATCGGCACCTTCTGCGGC
TCCAGCATTCCGCCTACGGCCACCTCCGAGAGTAATGCGTTGAGACTGGA
GTTCCATTCGGACAAGTCCATTCAGAGATCAGGCTTCGCGGCCGTCTTCT
TCACGGACATCGACGAGTGTGCCGTGAATAATGGTGGTTGTCAGCATGAG
TGCCGGAACACGATTGGATCCTACATCTGCATGTGCCACAACGGGTACTC
CATGCACGAGAATGGCCACGACTGCAAGGAGGGCGAGTGCAAGTACGAGA
TCTCCGCCCCCTTCGGCACGATTTTCAGTCCCAATTACCCGGATTCCTAT
CCCCCAAATGCGGACTGCGTTTGGCACTTCATAACCACGCCGGGGCACCG
CATCAAGCTGATTTTCAACGAGTTCGACGTGGAATCGCATCAGGAATGCA
CCTACGACAACGTGGCAGTTTACGATGGCGAATCTGAGTCCAGTTCGGTC
CTGGGTCGCTTCTGCGGGGATAAGATTCCCTTCCCCATCTCCTCCACCAG
CAACCAGATGTACATGGTGCTCAAGACGGACAAGAACAAGCAAAAGAACG
GCTTCACAGCCTCCCACTCCACGGCCTGTGGGGGCTACTTGCGTGCCACT
AGCCAGGTGCAGCAGTTCTATTCGCACGCCCGATTCGGAAACCAGGACTA
TGACGACGGCATGGACTGCGAGTGGACCATCGCGGCGCCGGACAACAGCT
ACGTCCAGCTCATATTCCTCACCTTCGACATCGAGAGCAGCGAGAACTGC
ACCTTTGACTACGTGCAGGTGTTCTCTGACATAGACGATGTGTACGGACA
GTATGGACCCATGTACGGACAGTACTGTGGCAATGTGCTGCCGCAGGACA
TCAACTCTATGACACATTCTCTGCTGGTTCGCTTTAAGACCGACGGTTCG
GTGCCGATGAAGGGCTTCTCTGCCTCATATGTGGCCGTGCCCAATTCCGG
GGAGTATGACCACTCCGACGAGGATGTGGAGAACTCGTACAGCTCCGAGA
TGGTTACCCCGTTTCCGGGCTCACTGAAGAGCATCTACATCGAGGACACG
CAGGAGGAGACCGACGAGTACAGCGACTTCAGCGGCAATCAACTGGTCTT
CAATGGGCAGTATCGTGGCCGATATAGTCTGCCCAAACGGTACTACTCCG
GAAAGGCAGCAAGCTTTCTAGACCAT
BO11445.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tok-RC | 4395 | CG6863-PC | 1..4392 | 17..4408 | 21960 | 100 | Plus |
| tok-RA | 4395 | CG6863-PA | 1..4392 | 17..4408 | 21960 | 100 | Plus |
| tok-RB | 4395 | CG6863-PB | 1..4392 | 17..4408 | 21960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tok-RC | 5364 | CG6863-RC | 325..4716 | 17..4408 | 21960 | 100 | Plus |
| tok-RA | 5368 | CG6863-RA | 329..4720 | 17..4408 | 21960 | 100 | Plus |
| tok-RB | 5247 | CG6863-RB | 208..4599 | 17..4408 | 21960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24746827..24747474 | 2997..3644 | 3240 | 100 | Plus |
| 3R | 32079331 | 3R | 24745092..24745651 | 1770..2329 | 2800 | 100 | Plus |
| 3R | 32079331 | 3R | 24727870..24728327 | 17..474 | 2290 | 100 | Plus |
| 3R | 32079331 | 3R | 24743159..24743584 | 817..1242 | 2130 | 100 | Plus |
| 3R | 32079331 | 3R | 24742610..24742957 | 473..820 | 1740 | 100 | Plus |
| 3R | 32079331 | 3R | 24748156..24748477 | 4087..4408 | 1610 | 100 | Plus |
| 3R | 32079331 | 3R | 24744007..24744295 | 1242..1530 | 1445 | 100 | Plus |
| 3R | 32079331 | 3R | 24746037..24746304 | 2528..2795 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 24747834..24748097 | 3824..4087 | 1320 | 100 | Plus |
| 3R | 32079331 | 3R | 24744788..24745027 | 1531..1770 | 1200 | 100 | Plus |
| 3R | 32079331 | 3R | 24746394..24746599 | 2794..2999 | 1030 | 100 | Plus |
| 3R | 32079331 | 3R | 24745760..24745959 | 2329..2528 | 1000 | 100 | Plus |
| 3R | 32079331 | 3R | 24747589..24747772 | 3641..3824 | 920 | 100 | Plus |
| 3R | 32079331 | 3R | 24750438..24750556 | 1601..1719 | 310 | 84 | Plus |
Blast to na_te.dros performed 2014-11-27 08:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6947 | 1231..1444 | 196 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6824 | 1322..1418 | 188 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6891 | 1329..1497 | 186 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2430 | 1322..1424 | 182 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6879 | 1322..1439 | 182 | 64.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1159 | 1321..1426 | 172 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2373..2544 | 1322..1496 | 165 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6866 | 1347..1499 | 155 | 60.4 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 637..746 | 1419..1308 | 150 | 60.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2736..2942 | 1296..1501 | 141 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6850 | 1368..1498 | 141 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1587 | 1342..1412 | 139 | 66.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..195 | 1338..1413 | 128 | 63.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9225 | 1338..1413 | 128 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2742..2838 | 1319..1418 | 124 | 60 | Plus |
BO11445.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:28 Download gff for
BO11445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RA | 330..4721 | 17..4410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:43 Download gff for
BO11445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RB | 208..4599 | 17..4410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:43 Download gff for
BO11445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RB | 208..4599 | 17..4410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:43 Download gff for
BO11445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24748157..24748477 | 4088..4410 | 99 | | Plus |
| 3R | 24727870..24728326 | 17..473 | 100 | -> | Plus |
| 3R | 24742611..24742957 | 474..820 | 100 | -> | Plus |
| 3R | 24743163..24743584 | 821..1242 | 100 | -> | Plus |
| 3R | 24744008..24744295 | 1243..1530 | 100 | -> | Plus |
| 3R | 24744788..24745027 | 1531..1770 | 100 | -> | Plus |
| 3R | 24745093..24745651 | 1771..2329 | 100 | -> | Plus |
| 3R | 24745761..24745959 | 2330..2528 | 100 | -> | Plus |
| 3R | 24746038..24746302 | 2529..2793 | 100 | -> | Plus |
| 3R | 24746394..24746599 | 2794..2999 | 100 | -> | Plus |
| 3R | 24746830..24747473 | 3000..3643 | 100 | -> | Plus |
| 3R | 24747592..24747772 | 3644..3824 | 100 | -> | Plus |
| 3R | 24747835..24748097 | 3825..4087 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:43 Download gff for
BO11445.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20553592..20554048 | 17..473 | 100 | -> | Plus |
| arm_3R | 20568333..20568679 | 474..820 | 100 | -> | Plus |
| arm_3R | 20568885..20569306 | 821..1242 | 100 | -> | Plus |
| arm_3R | 20569730..20570017 | 1243..1530 | 100 | -> | Plus |
| arm_3R | 20570510..20570749 | 1531..1770 | 100 | -> | Plus |
| arm_3R | 20570815..20571373 | 1771..2329 | 100 | -> | Plus |
| arm_3R | 20571483..20571681 | 2330..2528 | 100 | -> | Plus |
| arm_3R | 20571760..20572024 | 2529..2793 | 100 | -> | Plus |
| arm_3R | 20572116..20572321 | 2794..2999 | 100 | -> | Plus |
| arm_3R | 20572552..20573195 | 3000..3643 | 100 | -> | Plus |
| arm_3R | 20573314..20573494 | 3644..3824 | 100 | -> | Plus |
| arm_3R | 20573557..20573819 | 3825..4087 | 100 | -> | Plus |
| arm_3R | 20573879..20574199 | 4088..4410 | 99 | | Plus |
BO11445.3prime Sequence
841 bp (693 high quality bases) assembled on 2006-04-19
> BO11445.3prime
ATGGTCTAGAAAGCTTGCTGCCTTTCCGGAGTAGTACCGTTTGGGCAGAC
TATATCGGCCACGATACTGCCCATTGAAGACCAGTTGATTGCCGCTGAAG
TCGCTGTACTCGTCGGTCTCCTCCTGCGTGTCCTCGATGTAGATGCTCTT
CAGTGAGCCCGGAAACGGGGTAACCATCTCGGAGCTGTACGAGTTCTCCA
CATCCTCGTCGGAGTGGTCATACTCCCCGGAATTGGGCACGGCCACATAT
GAGGCAGAGAAGCCCTTCATCGGCACCGAACCGTCGGTCTTAAAGCGAAC
CAGCAGAGAATGTGTCATAGAGTTGATGTCCTGCGGCAGCACATTGCCAC
AGTACTGTCCGTACATGGGTCCATACTGTCCGTACACATCGTCTATGTCA
GAGAACACCTGCACGTAGTCAAAGGTGCAGTTCTCGCTGCTCTCGATGTC
GAAGGTGAGGAATATGAGCTGGACGTAGCTGTTGTCCGGCGCCGCGATGG
TCCACTCGCAGTCCATGCCGTCGTCATAGTCCTGGTTTCCGAATCGGGCG
TGCGAATAGAACTGCTGCACCTGGCTAGTGGCACGCAAGTAGCCCCCACA
GGCCGTGGAGTGGGAGGCTGTGAAGCCGTTCTTTTGCTTGTTCTTGTCCG
TCTTGAGCACCATGTACATCTGGTTGCTGGTGGAGGAGATGGGGAAGGGA
ATCTTATCCCCGCAGAAGCGACCCAGGACCGAACTGGACTCAGATTCGCC
ATCGTAAACTGCCACGTTGTCGTAGGTGCATTCCTGATGCGATTCCACGT
CGAACTCGTTGAAAATCAGCTTGATGCGGGGCCCCGGCGTG
BO11445.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6863-PB | 4395 | tok-RB | 3570..4392 | 841..19 | 4090 | 99.8 | Minus |
| CG6863-PA | 4395 | tok-RA | 3570..4392 | 841..19 | 4090 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tok-RC | 5364 | CG6863-RC | 3894..4716 | 841..19 | 4100 | 99.9 | Minus |
| tok-RA | 5368 | CG6863-RA | 3898..4720 | 841..19 | 4100 | 99.9 | Minus |
| tok-RB | 5247 | CG6863-RB | 3777..4599 | 841..19 | 4100 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24748156..24748477 | 340..19 | 1610 | 100 | Minus |
| 3R | 32079331 | 3R | 24747834..24748097 | 603..340 | 1320 | 100 | Minus |
| 3R | 32079331 | 3R | 24747589..24747772 | 786..603 | 920 | 100 | Minus |
| 3R | 32079331 | 3R | 24747416..24747474 | 841..783 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-03 17:32:34 has no hits.
BO11445.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:44 Download gff for
BO11445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-PB | 3570..4395 | 18..841 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:34 Download gff for
BO11445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6863-PA | 3570..4395 | 18..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:35:55 Download gff for
BO11445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RB | 3777..4599 | 19..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:02:38 Download gff for
BO11445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RB | 3777..4599 | 19..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:02:38 Download gff for
BO11445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24747835..24748097 | 340..602 | 100 | -> | Minus |
| 3R | 24747416..24747473 | 784..841 | 98 | -> | Minus |
| 3R | 24747592..24747772 | 603..783 | 100 | -> | Minus |
| 3R | 24748157..24748477 | 19..339 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:35:55 Download gff for
BO11445.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20573138..20573195 | 784..841 | 98 | -> | Minus |
| arm_3R | 20573314..20573494 | 603..783 | 100 | -> | Minus |
| arm_3R | 20573557..20573819 | 340..602 | 100 | -> | Minus |
| arm_3R | 20573879..20574199 | 19..339 | 100 | | Minus |
BO11445.5prime Sequence
789 bp (773 high quality bases) assembled on 2006-04-19
> BO11445.5prime
GAAGTTATCAGTCGACATGCGTAGGAGGCGTGGCACGCCCCTGGGCGTCA
GCTGGACGAACTGCGTCCTGCTCCTGGCCACCGGTCTGCTGGTGGTGCTC
ATTTCGGTGCACGCCAAGAACCCCAGGCCGCATCGAGGACTACCCGCCCC
GGCTCCTGCACCAGTTCCTGCATCCGTAGATCAGGTGGCAACTGAAAATG
CCCACAGGCGGGAACCTACCGTCGATGGGAGTGTACTTCAACGGCTATCG
GGTTCAGATAGGGCTGTTGACGAGGATGAGGATGTCGATGAGGATGAGGA
TGAGGGGCTAAAGCACCAGCACCTCGAGCATCGGCAACAATTTGACGCAT
ATCTGGGCACAATCCGACGGCTGCGTCGTCCATACCGCAGCAAATACACC
ATCGAGCAGCTGATGCGACTGCATGTGACACCAAAGGTATCCGGAGACAT
TGACATGGATCCCTGCAAGGCGGGCGGTTTCATGGGCGACATTGCCCTGC
CGGAGGGTGATTCCGGCCCGGTGGTTGCCCACACGCCCATCGACGACGAG
GAGCAGGAGCGCCAGGAGGTGGAGCAGCTGCTGGCTGACTCGCCCAGCCC
GGTTCACGACCCCCCTTCCGTTTCCGGTGCGGCCAACTCAGGGCCGACCA
AGTTCAATGCCACCTTCCAGCTGGATCTGGAGAAGCTCAAGCAGGAGGTC
TACCACGAGGGCCTACAGGTGGAGGAGGAGGGCCTCACCGACATCATCCG
CAAGAAGACCAAGCTGCCCAGCTCANGTCCGGTCAACCT
BO11445.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6863-PB | 4395 | tok-RB | 1..773 | 17..789 | 3846 | 99.8 | Plus |
| CG6863-PA | 4395 | tok-RA | 1..773 | 17..789 | 3846 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tok-RC | 5364 | CG6863-RC | 325..1097 | 17..789 | 3854 | 99.9 | Plus |
| tok-RA | 5368 | CG6863-RA | 329..1101 | 17..789 | 3854 | 99.9 | Plus |
| tok-RB | 5247 | CG6863-RB | 208..980 | 17..789 | 3854 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24727870..24728327 | 17..474 | 2290 | 100 | Plus |
| 3R | 32079331 | 3R | 24742610..24742926 | 473..789 | 1574 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:01:34 has no hits.
BO11445.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:45 Download gff for
BO11445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-PB | 1..773 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:36 Download gff for
BO11445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6863-PA | 1..773 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:53:01 Download gff for
BO11445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RB | 208..980 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:23 Download gff for
BO11445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RB | 208..980 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:23 Download gff for
BO11445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24742611..24742926 | 474..789 | 99 | | Plus |
| 3R | 24727870..24728326 | 17..473 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:53:01 Download gff for
BO11445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20553592..20554048 | 17..473 | 100 | -> | Plus |
| arm_3R | 20568333..20568648 | 474..789 | 99 | | Plus |
BO11445.pep Sequence
Translation from 16 to 4426
> BO11445.pep
MRRRRGTPLGVSWTNCVLLLATGLLVVLISVHAKNPRPHRGLPAPAPAPV
PASVDQVATENAHRREPTVDGSVLQRLSGSDRAVDEDEDVDEDEDEGLKH
QHLEHRQQFDAYLGTIRRLRRPYRSKYTIEQLMRLHVTPKVSGDIDMDPC
KAGGFMGDIALPEGDSGPVVAHTPIDDEEQERQEVEQLLADSPSPVHDPP
SVSGAANSGPTKFNATFQLDLEKLKQEVYHEGLQVEEEGLTDIIRKKTKL
PSSGPVNLKAGQSQSQSQSANEPVKPGSESPSDYAQASSYKNEVLPPSEQ
RIHTDKPARLTLAEIGPKFSNKTQSLHRNVDTRKIQSDNKDIEDDSGNNF
VAERRPSQIVPTSLPEQRSTPAHVYSNAGGNGMQLDDEVDFLHSRGVVRR
RHRRGPKQRRSNQHLEHEVKLQRLREELSRPVIEAHHHQSHHQKQAQHRQ
HHQSHHRKKHRRQQQHHRRRGQSTTQYVNHSPPGFNQSQQAQQQSVPEMD
LLKAETSKDEEPLRHRVARAVTAKKERIWDYGVIPYEIDGNFSGIHKALF
KLAMRHWENSTCIKFVERDPEIHPNYIVFTVRSCGCCSFVGKRGNGPQAI
SIGRNCDKFGIVVHELGHVVGFWHEHTRPDREKHVVIEHNNIMKGQDYNF
NMLSPDEVDSLGMAYDYDSIMHYARNTFSKGTYLDTILPIEMKGRKRPEI
GQRLRLSQGDIAQANLLYKCPKCGRTFQESSGIFASPSHYTAGALSNETE
HCEWRITATYGERVELKLENMNIFKSNNCETDYLEIRDGYFEKSPLIGRF
CGKVDKEVIRTESSRMLLTYVNTHRIEGFRGFKAEFDVVCGGELSVDDAV
GRLESPNYPLDYLPNKECVWKITVPESYQVALKFQSFEVENHDSCVYDYV
EVRDGPGQDAPLIGVFCGYKPPPNMKSSGNSMYVKFVSDTSVQKAGFSAV
FMKEVDECETQNHGCEHECINTLGGYECSCRIGFELHSDKKHCEDACGGV
IEYPNGTITSPSFPEMYPLLKECIWEIVAPPKHRISLNFTHFDLEGTAHQ
QSDCGYDSVTVYSKLGENRLKRIGTFCGSSIPPTATSESNALRLEFHSDK
SIQRSGFAAVFFTDIDECAVNNGGCQHECRNTIGSYICMCHNGYSMHENG
HDCKEGECKYEISAPFGTIFSPNYPDSYPPNADCVWHFITTPGHRIKLIF
NEFDVESHQECTYDNVAVYDGESESSSVLGRFCGDKIPFPISSTSNQMYM
VLKTDKNKQKNGFTASHSTACGGYLRATSQVQQFYSHARFGNQDYDDGMD
CEWTIAAPDNSYVQLIFLTFDIESSENCTFDYVQVFSDIDDVYGQYGPMY
GQYCGNVLPQDINSMTHSLLVRFKTDGSVPMKGFSASYVAVPNSGEYDHS
DEDVENSYSSEMVTPFPGSLKSIYIEDTQEETDEYSDFSGNQLVFNGQYR
GRYSLPKRYYSGKAASFLDH
BO11445.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tok-PC | 1464 | CG6863-PC | 1..1464 | 1..1464 | 7895 | 100 | Plus |
| tok-PA | 1464 | CG6863-PA | 1..1464 | 1..1464 | 7895 | 100 | Plus |
| tok-PB | 1464 | CG6863-PB | 1..1464 | 1..1464 | 7895 | 100 | Plus |
| tld-PA | 1067 | CG6868-PA | 88..1055 | 461..1428 | 2890 | 53.5 | Plus |
| Cubn-PB | 3750 | CG32702-PB | 1099..1663 | 722..1384 | 458 | 25.4 | Plus |
