Clone Sequence Records
BO11449.complete Sequence
4234 bp assembled on 2010-04-13
GenBank Submission: KX799059
> BO11449.complete
GAAGTTATCAGTCGACATGGCCACGAACTGCGACTTCATCGAGCAGCCAG
TGAAACAGCAGCCGTTGGCCAATGCACCAGTCATGGGCGTCCAGGAGGAT
AAGGCACAGGAGCCCAAGGAGTTGCCGGATGAGCCGGCGAAGCAGCCAGA
CGGCCAACCATACCAGCATTTCGCTGGCGAGGATAGCTTCGAATGCGCCT
TCGAGTCGACCATGGACGACCTGGAGCAGGGTGTCCTGGATGGTTACGAG
TCGGACTCGGAGGCGAGTGCCAACGACCAGATCACTGATTCCGCCTCCTC
TGGCAGCCTGGGCCAATTGGCCCAGCAGCAGCAGCGCGAGGAGCGATTGA
GGGGCTTGCCGGGTCCACTTCATGGCCAGCATATCGATTCCGAGATGCTC
AAGTGCATGCCGCGATCGAACTCCTTCGACTTTCACAGCAGCAGTGGCAG
CAGCTCGGATGACGAGGATGATCCGGATGATGACGACGACGATCAAGTTC
ACCACAGCCTGGGGCTCAGCCTCAGCGGGAAGTTTGTCAAGGTTGATCTC
TATTCGGGTCACCAGAGACCCGGCTATCTGTTACCTCCCTACATCGAACG
ACGCCGCTTGTCGCAGTGCAAGGAGGAGGATGACGAGGATGAGGGCGACA
GGACGCAGCTGGGCGGCGGCTCATCATCCACGGGAGAGTCAACCAAATCC
GAAAAAGCTTCGAAGGCGCCACCAAGGCCACCCACGCCACAGGATGAGGC
CTCCAAGGAGAAGTTTAAGGATCTGGAGCGTCTGCGGCAGCAGTTTATGC
ACAAGATCGATAGGATCAATACGCGAAATATCGAGGAGAGTGAGGCACCG
CCGCCACCACCTCCTCCGCCGCCTCCCATACCAGCCACGATTCTACCAAA
GGCGCTAAAGGCGCTACTGCACACCCAGGAACCAGTGGCGCCTCCTTCCC
GTCCATCTCCAGTTGGCCCACCAAGTCCTGCACCCACGTCCAGCGTTATT
GTGGCAAAGGAAACACCGGTTCCTGTAACACCGGAGCCCGTTTCCCCGCT
GCCGCTGCCCACGGAGCCGCCGCTGATTATCAAGGGCAAATTTAAGGTGA
CACTCGCCCAGGAGACACCCGAACTGCGAGTCGAGGCCCAGAAGCTGAGC
AAACTGAATGCCAGCTCGAATGCCCACACCATCAGCTTTCCCTCCAGCTT
CGGAGGCTACTCCTCGGTGCAGGGACTGTTCTCCCAGCGATATGGCTCAA
ATCGGTTTCCCACCGCCGCTCCCCACATGTCCAAGCAGTTCTTCGAGCCA
TCGCTGGTGGAGATTCGCACGCCGGCCCAGAGCAACGTGGCGCTGAATAC
AACTGGGCTGGCCAATAGCAATCACCAAAGCCTCACTTGTGATACAAATA
GTTTAGCCAACAAGCCGCGCACGCCCAGCGAACGGGAGCTGGACGAGATC
TGGATACGGCGGCAGGACGGTGGATTGAGTGGCACTGCTGCACCAGGCGC
ACCGGGTGCTCCACTTCCTCTGCTCCAGCAGCAGCAGCAGCAGCAGAGAC
CCGTCTCCCTGGGTGGGGCGTCTACCATGCCCCGTTTGCTGAGGAGCGAG
AGCAGTGCCTCCACCACAAGTCCATCCCGCCAGCTCACCAACTCGGGATC
CGTCTCCGTTTCCGTGTCCGATGATGAGCAGGATGGCAGCCTCGGAGGAG
CCGGCCGGATGCCAGGATCACGACCCTCCAGCGCTCCCGCAGAGCCAAAT
GCCAAGGCGGCCAAGAAGGCCTACAAAAAGATGGAAAAGGAGCAGCGTCG
CCAGGAGAAGGAGCAGTCGCGACGGGAAAAGGAGGCCCGCAAGCTGGAGC
GCGAGACGGCGAGAAGGAACGAACGCGAGGCGGCCAAGCTGGAGAAGATC
AACAGGCACAGCGAGAAGATCTCACGCAGCACGGAGCGAATGGCCATGGC
CGGTGTGGGATCGCGGTCCGGTTCGCTGGAGCGGAGGCGAAGCGGCGAGG
ACTCGCCCGTGCTCAATCAGTCGACGGTGCACGGTATAGCGTCACCCAAC
CGAAGGCCAACGATATTCGACGTTTTCCGACCGCGTGCGAAATCCGATGC
GAAGCGGCAGAAGGAGAAGCATCTGCTGGATCCCTCGTCCGCCGACAGCA
GCGCCACCAGCAGCACCTACTCCGTTTCCGGCGGCACAGGCCCGGCCACG
AGCTCGGCAGCAGGTGGAGCAGGAGGAGCGGCGGCAGCAGCAGGACAGGG
CGCAGCGGGAGGAGCCGGTGGCCTTATGAACTCCATGAAGGTGGCCATGC
AGAACTTTAGCCATCGCCAGCATCCCGCCGTGACGATAACGAGCGCCGAC
GGCACGCAATCAACGGCAAAGAGCAAGTACAAAGACGGCAGTGCCCATCC
GCATCAAGGCAGCGACGCGCAGTATTACCACACGGTGACGGCGGTGCGTC
CAAACTCTTCCCAACGGTCGCCGATGACCAAGGTCATGGATCTGTTCCGG
CATCGATCCAGCTCGGTTGTCAGCGAAGCCGACAAACGCAAAGCGCGCGC
GGCGGCGCATCAGCAACAGTTGGCTGTGCAAAGTGCTCACATGCGTCGTG
CCTCCGCGGATTTGGAGAAACGTCGTGCATCAGTTGGTGCCGCAGGTCGA
GGACTGCGAGGGGATGGTACTTTGGATCCACACCATGCAGCCATCCTCTT
CAGAGACTCACGAGGGTTGCCTGTCGCTGATCCGTTCCTAGAGAAAGTAA
ATCTATCAGATCTGGAAGAGGACGACTCACAGATCTTCGTGAAGTTCTTT
CGTTTTCACAAGTGCTATGATCTGATACCCACCTCCGCCAAGTTGGTTGT
CTTCGACACCCAGCTTCTTGTAAAGAAGGCCTTCTACGCCCTCGTCTACA
ACGGTGTGCGAGCGGCACCGCTCTGGGATTCGGAGAAGCAACAGTTCGTG
GGCATGCTAACCATCACGGACTTTATCAAGATCCTGCAAATGTATTACAA
ATCGCCAAATGCGTCCATGGAGCAGCTGGAAGAGCACAAACTGGACACGT
GGCGGAGCGTGCTGCACAACCAGGTGATGCCGTTGGTCAGCATCGGACCG
GATGCGTCCCTCTACGATGCCATCAAAATTCTCATCCACAGCCGCATACA
TCGCCTGCCCGTCATCGATCCGGCGACCGGCAATGTCCTCTACATCCTGA
CACATAAACGCATACTTAGGTTCCTTTTCCTATACATTAATGAATTACCA
AAGCCCGCGTACATGCAAAAAAGTTTGCGCGAACTGAAGATTGGCACCTA
TAACAACATCGAGACCGCCGACGAGACGACGAGCATCATCACGGCGCTCA
AGAAATTTGTGGAGCGACGAGTCTCAGCCCTGCCACTAGTGGATTCCGAT
GGTCGCCTCGTTGACATTTACGCAAAGTTTGATGTGATTAATCTCGCCGC
CGAGAAAACCTACAACGATCTCGATGTTTCGCTGCGCAAAGCCAACGAGC
ACCGGAACGAGTGGTTCGAGGGCGTGCAGAAGTGCAATCTGGACGAATCG
CTCTACACGATCATGGAACGAATCGTCCGCGCCGAAGTACATCGACTGGT
GGTGGTCGACGAGAATCGCAAAGTGATCGGCATTATCTCGCTGTCCGATA
TACTGCTCTACCTCGTCCTGCGACCAAGCGGTGAAGGCGTCGGTGGCTCG
GAGAGCTCATTGCGTGCGTCCGATCCCGTTCTGCTGCGCAAAGTGGCTGA
GGTTGAAATACCAGCGACAGCCGCAGCGGCGACGACAACAACCCCGCCTC
GCAGTCCATCGGCCGGATCCGGCAATCGCAGCCTGATCGAGGACATACCC
GAAGAGGAGACGGCGCCGGCGAGGAGCGACGATGCCGACAGTGATAACAA
TAAGTCCGCCAGTGAGGATAAAGCCAACAATAACCAGCACGACCAGACGA
CGACGGCTGCGACAGCTAATGGTGATAGCAACAACAGCCCCGTAGAAGTG
TCCTTTGCCGATGAGGCGCAGGAAGAAGAAGCTGCCGACCAGGTCGAGCG
CAGCAATTGTGATGATGATGACCAGCCAGCGTTAGCGGAGATTGAGCGCA
AGAATGCATCGATGGACGACGACGAGGACGATGGGATGAGCAGCGCCGTG
TCCGCTGCCTCCGCTTTGGGCCAGTCACTGACGCCCGCGGCGCAAGAAAT
GGCGTTGGTTAGTGAAGCAAGCTTTCTAGACCAT
BO11449.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RF | 4203 | CG17299-PF | 1..4200 | 17..4216 | 21000 | 100 | Plus |
| SNF4Agamma-RS | 4203 | CG17299-PS | 1..4200 | 17..4216 | 21000 | 100 | Plus |
| SNF4Agamma-RR | 4203 | CG17299-PR | 1..4200 | 17..4216 | 21000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RF | 4769 | CG17299-RF | 407..4606 | 17..4216 | 21000 | 100 | Plus |
| SNF4Agamma-RS | 4592 | CG17299-RS | 230..4429 | 17..4216 | 21000 | 100 | Plus |
| SNF4Agamma-RR | 6292 | CG17299-RR | 348..4547 | 17..4216 | 21000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21173975..21175634 | 17..1676 | 8300 | 100 | Plus |
| 3R | 32079331 | 3R | 21211748..21212524 | 3440..4216 | 3885 | 100 | Plus |
| 3R | 32079331 | 3R | 21178579..21179204 | 1797..2422 | 3130 | 100 | Plus |
| 3R | 32079331 | 3R | 21210788..21211080 | 2765..3057 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 21211387..21211590 | 3236..3439 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 21211141..21211319 | 3057..3235 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 21202452..21202585 | 2583..2716 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 21179265..21179390 | 2420..2545 | 630 | 100 | Plus |
| 3R | 32079331 | 3R | 21178278..21178399 | 1676..1797 | 610 | 100 | Plus |
| 3R | 32079331 | 3R | 21207618..21207667 | 2716..2765 | 250 | 100 | Plus |
| 3R | 32079331 | 3R | 21185547..21185586 | 2545..2584 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:18:08 has no hits.
BO11449.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:30 Download gff for
BO11449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RF | 391..4590 | 17..4218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:07 Download gff for
BO11449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RR | 348..4547 | 17..4218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:19 Download gff for
BO11449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RR | 348..4547 | 17..4218 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:19 Download gff for
BO11449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21211141..21211319 | 3057..3235 | 100 | -> | Plus |
| 3R | 21211387..21211590 | 3236..3439 | 100 | -> | Plus |
| 3R | 21173975..21175633 | 17..1675 | 100 | -> | Plus |
| 3R | 21178278..21178399 | 1676..1797 | 100 | -> | Plus |
| 3R | 21178580..21179204 | 1798..2422 | 100 | -> | Plus |
| 3R | 21179268..21179390 | 2423..2545 | 100 | -> | Plus |
| 3R | 21185548..21185584 | 2546..2582 | 100 | -> | Plus |
| 3R | 21202452..21202585 | 2583..2716 | 100 | -> | Plus |
| 3R | 21207619..21207667 | 2717..2765 | 100 | -> | Plus |
| 3R | 21210789..21211079 | 2766..3056 | 100 | -> | Plus |
| 3R | 21211748..21212524 | 3440..4218 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:07 Download gff for
BO11449.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16999697..17001355 | 17..1675 | 100 | -> | Plus |
| arm_3R | 17004000..17004121 | 1676..1797 | 100 | -> | Plus |
| arm_3R | 17004302..17004926 | 1798..2422 | 100 | -> | Plus |
| arm_3R | 17004990..17005112 | 2423..2545 | 100 | -> | Plus |
| arm_3R | 17011270..17011306 | 2546..2582 | 100 | -> | Plus |
| arm_3R | 17028174..17028307 | 2583..2716 | 100 | -> | Plus |
| arm_3R | 17033341..17033389 | 2717..2765 | 100 | -> | Plus |
| arm_3R | 17036511..17036801 | 2766..3056 | 100 | -> | Plus |
| arm_3R | 17036863..17037041 | 3057..3235 | 100 | -> | Plus |
| arm_3R | 17037109..17037312 | 3236..3439 | 100 | -> | Plus |
| arm_3R | 17037470..17038246 | 3440..4218 | 99 | | Plus |
BO11449.3prime Sequence
912 bp (823 high quality bases) assembled on 2006-04-19
> BO11449.3prime
ATGGTCTAGAAAGCTTGCTTCACTAACCAACGCCATTTCTTGCGCCGCGG
GCGTCAGTGACTGGCCCAAAGCGGAGGCAGCGGACACGGCGCTGCTCATC
CCATCGTCCTCGTCGTCGTCCATCGATGCATTCTTGCGCTCAATCTCCGC
TAACGCTGGCTGGTCATCATCATCACAATTGCTGCGCTCGACCTGGTCGG
CAGCTTCTTCTTCCTGCGCCTCATCGGCAAAGGACACTTCTACGGGGCTG
TTGTTGCTATCACCATTAGCTGTCGCAGCCGTCGTCGTCTGGTCGTGCTG
GTTATTGTTGGCTTTATCCTCACTGGCGGACTTATTGTTATCACTGTCGG
CATCGTCGCTCCTCGCCGGCGCCGTCTCCTCTTCGGGTATGTCCTCGATC
AGGCTGCGATTGCCGGATCCGGCCGATGGACTGCGAGGCGGGGTTGTTGT
CGTCGCCGCTGCGGCTGTCGCTGGTATTTCAACCTCAGCCACTTTGCGCA
GCAGAACGGGATCGGACGCACGCAATGAGCTCTCCGAGCCACCGACGCCT
TCACCGCTTGGTCGCAGGACGAGGTAGAGCAGTATATCGGACAGCGAGAT
AATGCCGATCACTTTGCGATTCTCGTCGACCACCACCAGTCGATGTACTT
CGGCGCGGACGATTCGTTCCATGATCGTGTAGAGCGATTCGTCCAGATTG
CACTTCTGCACGCCCTCGAACCACTCGTTCCGGTGCTCGTTGGCTTTGCG
CAGCGAAACATCGAGATCGTTGTAGGTTTTCTCGGCGGCGAGATTAATCA
CATCAAACTTTGCGTAAATGTCAACGAGGCGACCATCGGAATCCACTAGT
GGCAGGGCTGAGACTCGTCCCCTCACAAATTTCTTGAGCGCCGTGATGAT
GCTCGTCGTCTC
BO11449.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17299-PK | 2721 | SNF4Agamma-RK | 1868..2718 | 869..19 | 4255 | 100 | Minus |
| CG17299-PL | 2157 | SNF4Agamma-RL | 1304..2154 | 869..19 | 4255 | 100 | Minus |
| CG17299-PI | 1617 | SNF4Agamma-RI | 764..1614 | 869..19 | 4255 | 100 | Minus |
| CG17299-PJ | 2721 | SNF4Agamma-RJ | 1868..2718 | 869..19 | 4255 | 100 | Minus |
| CG17299-PA | 2844 | SNF4Agamma-RA | 1991..2841 | 869..19 | 4255 | 100 | Minus |
| CG17299-PB | 2844 | SNF4Agamma-RB | 1991..2841 | 869..19 | 4255 | 100 | Minus |
| CG17299-PF | 4203 | SNF4Agamma-RF | 3350..4200 | 869..19 | 4255 | 100 | Minus |
| CG17299-PC | 2721 | SNF4Agamma-RC | 1868..2718 | 869..19 | 4255 | 100 | Minus |
| CG17299-PE | 2721 | SNF4Agamma-RE | 1868..2718 | 869..19 | 4255 | 100 | Minus |
| CG17299-PG | 2445 | SNF4Agamma-RG | 1592..2442 | 869..19 | 4255 | 100 | Minus |
| CG17299-PK | 2721 | SNF4Agamma-RK | 1825..1863 | 912..874 | 195 | 100 | Minus |
| CG17299-PL | 2157 | SNF4Agamma-RL | 1261..1299 | 912..874 | 195 | 100 | Minus |
| CG17299-PI | 1617 | SNF4Agamma-RI | 721..759 | 912..874 | 195 | 100 | Minus |
| CG17299-PJ | 2721 | SNF4Agamma-RJ | 1825..1863 | 912..874 | 195 | 100 | Minus |
| CG17299-PA | 2844 | SNF4Agamma-RA | 1948..1986 | 912..874 | 195 | 100 | Minus |
| CG17299-PB | 2844 | SNF4Agamma-RB | 1948..1986 | 912..874 | 195 | 100 | Minus |
| CG17299-PF | 4203 | SNF4Agamma-RF | 3307..3345 | 912..874 | 195 | 100 | Minus |
| CG17299-PC | 2721 | SNF4Agamma-RC | 1825..1863 | 912..874 | 195 | 100 | Minus |
| CG17299-PE | 2721 | SNF4Agamma-RE | 1825..1863 | 912..874 | 195 | 100 | Minus |
| CG17299-PG | 2445 | SNF4Agamma-RG | 1549..1587 | 912..874 | 195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RE | 3308 | CG17299-RE | 2252..3145 | 912..19 | 4425 | 99.7 | Minus |
| SNF4Agamma-RC | 3197 | CG17299-RC | 2141..3034 | 912..19 | 4425 | 99.7 | Minus |
| SNF4Agamma-RG | 2786 | CG17299-RG | 1730..2623 | 912..19 | 4425 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21211748..21212524 | 795..19 | 3885 | 100 | Minus |
| 3R | 32079331 | 3R | 21211474..21211590 | 912..796 | 540 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:52:51 has no hits.
BO11449.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:52 Download gff for
BO11449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17299-PG | 1549..2445 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:43 Download gff for
BO11449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17299-PC | 1825..2721 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:23:24 Download gff for
BO11449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 1730..2630 | 12..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:32 Download gff for
BO11449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 1730..2630 | 12..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:32 Download gff for
BO11449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21211474..21211590 | 796..912 | 97 | -> | Minus |
| 3R | 21211748..21212531 | 12..795 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:23:24 Download gff for
BO11449.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17037196..17037312 | 796..912 | 97 | -> | Minus |
| arm_3R | 17037470..17038253 | 12..795 | 99 | | Minus |
BO11449.5prime Sequence
851 bp (710 high quality bases) assembled on 2006-04-19
> BO11449.5prime
GAAGTTATCAGTCGACATGGCCACGAACTGCGACTTCATCGAGCAGCCAG
TGAAACAGCAGCCGTTGGCCAATGCACCAGTCATGGGCGTCCAGGAGGAT
AAGGCACAGGAGCCCAAGGAGTTGCCGGATGAGCCGGCGAAGCAGCCAGA
CGGCCAACCATACCAGCATTTCGCTGGCGAGGATAGCTTCGAATGCGCCT
TCGAGTCGACCATGGACGACCTGGAGCAGGGTGTCCTGGATGGTTACGAG
TCGGACTCGGAGGCGAGTGCCAACGACCAGATCACTGATTCCGCCTCCTC
TGGCAGCCTGGGCCAATTGGCCCAGCAGCAGCAGCGCGAGGAGCGATTGA
GGGGCTTGCCGGGTCCACTTCATGGCCAGCATATCGATTCCGAGATGCTC
AAGTGCATGCCGCGATCGAACTCCTTCGACTTTCACAGCAGCAGTGGCAG
CAGCTCGGATGACGAGGATGATCCGGATGATGACGACGACGATCAAGTTC
ACCACAGCCTGGGGCTCAGCCTCAGCGGGAAGTTTGTCAAGGTTGATCTC
TATTCGGGTCACCAGAGACCCGGCTATCTGTTACCTCCCTACATCGAACG
ACGCCGCTTGTCGCAGTGCAAGGAGGAGGATGACGAGGATGAGGGCGACA
GGACGCAGCTGGGCGGCGGCTCATCATCCACGGGAGAGTCAACCAAATCC
GAAAAAGCTTCGAAGGCGCCACCAAGGCCACCCACGCCACAGGATGAGGC
CTCCAAGGAGAAGTTTAAGGATCTGGAGCGTCTGCGGCAGCAGTTTATGC
ACAAGATCGATAGGATCAATACGCGAAATATCGAGGAGAGTGAGGCACCG
C
BO11449.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17299-PF | 4203 | SNF4Agamma-RF | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RF | 4769 | CG17299-RF | 407..1241 | 17..851 | 4175 | 100 | Plus |
| SNF4Agamma-RS | 4592 | CG17299-RS | 230..1064 | 17..851 | 4175 | 100 | Plus |
| SNF4Agamma-RR | 6292 | CG17299-RR | 348..1182 | 17..851 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21173975..21174809 | 17..851 | 4175 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:01:26 has no hits.
BO11449.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:53 Download gff for
BO11449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17299-PF | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:44 Download gff for
BO11449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17299-PF | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:52:59 Download gff for
BO11449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RR | 339..1182 | 7..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:31:10 Download gff for
BO11449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RR | 339..1182 | 7..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:10 Download gff for
BO11449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21173966..21174809 | 7..851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:52:59 Download gff for
BO11449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16999688..17000531 | 7..851 | 99 | | Plus |
BO11449.pep Sequence
Translation from 16 to 4234
> BO11449.pep
MATNCDFIEQPVKQQPLANAPVMGVQEDKAQEPKELPDEPAKQPDGQPYQ
HFAGEDSFECAFESTMDDLEQGVLDGYESDSEASANDQITDSASSGSLGQ
LAQQQQREERLRGLPGPLHGQHIDSEMLKCMPRSNSFDFHSSSGSSSDDE
DDPDDDDDDQVHHSLGLSLSGKFVKVDLYSGHQRPGYLLPPYIERRRLSQ
CKEEDDEDEGDRTQLGGGSSSTGESTKSEKASKAPPRPPTPQDEASKEKF
KDLERLRQQFMHKIDRINTRNIEESEAPPPPPPPPPPIPATILPKALKAL
LHTQEPVAPPSRPSPVGPPSPAPTSSVIVAKETPVPVTPEPVSPLPLPTE
PPLIIKGKFKVTLAQETPELRVEAQKLSKLNASSNAHTISFPSSFGGYSS
VQGLFSQRYGSNRFPTAAPHMSKQFFEPSLVEIRTPAQSNVALNTTGLAN
SNHQSLTCDTNSLANKPRTPSERELDEIWIRRQDGGLSGTAAPGAPGAPL
PLLQQQQQQQRPVSLGGASTMPRLLRSESSASTTSPSRQLTNSGSVSVSV
SDDEQDGSLGGAGRMPGSRPSSAPAEPNAKAAKKAYKKMEKEQRRQEKEQ
SRREKEARKLERETARRNEREAAKLEKINRHSEKISRSTERMAMAGVGSR
SGSLERRRSGEDSPVLNQSTVHGIASPNRRPTIFDVFRPRAKSDAKRQKE
KHLLDPSSADSSATSSTYSVSGGTGPATSSAAGGAGGAAAAAGQGAAGGA
GGLMNSMKVAMQNFSHRQHPAVTITSADGTQSTAKSKYKDGSAHPHQGSD
AQYYHTVTAVRPNSSQRSPMTKVMDLFRHRSSSVVSEADKRKARAAAHQQ
QLAVQSAHMRRASADLEKRRASVGAAGRGLRGDGTLDPHHAAILFRDSRG
LPVADPFLEKVNLSDLEEDDSQIFVKFFRFHKCYDLIPTSAKLVVFDTQL
LVKKAFYALVYNGVRAAPLWDSEKQQFVGMLTITDFIKILQMYYKSPNAS
MEQLEEHKLDTWRSVLHNQVMPLVSIGPDASLYDAIKILIHSRIHRLPVI
DPATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRELKIGTYNNIET
ADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAEKTYN
DLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDEN
RKVIGIISLSDILLYLVLRPSGEGVGGSESSLRASDPVLLRKVAEVEIPA
TAAAATTTTPPRSPSAGSGNRSLIEDIPEEETAPARSDDADSDNNKSASE
DKANNNQHDQTTTAATANGDSNNSPVEVSFADEAQEEEAADQVERSNCDD
DDQPALAEIERKNASMDDDEDDGMSSAVSAASALGQSLTPAAQEMALVSE
ASFLDH
BO11449.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-PF | 1400 | CG17299-PF | 1..1400 | 1..1400 | 7151 | 100 | Plus |
| SNF4Agamma-PS | 1400 | CG17299-PS | 1..1400 | 1..1400 | 7151 | 100 | Plus |
| SNF4Agamma-PR | 1400 | CG17299-PR | 1..1400 | 1..1400 | 7151 | 100 | Plus |
| SNF4Agamma-PA | 947 | CG17299-PA | 99..947 | 552..1400 | 4269 | 99.8 | Plus |
| SNF4Agamma-PB | 947 | CG17299-PB | 99..947 | 552..1400 | 4269 | 99.8 | Plus |
