Clone BO11453 Report

Search the DGRC for BO11453

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:114
Well:53
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO11453.pep: Imported from assembly
Sequenced Size:1930

Clone Sequence Records

BO11453.complete Sequence

1930 bp assembled on 2010-04-13

> BO11453.complete
GAAGTTATCAGTCGACATGCAAAACGATATGGTCAGCATACCGGTGGCCA
ATTTGAACGGCGGCCTTAAAGCGGCCAGCAGCGGTTCCGGAGTTGGTGTA
GTGACCTCCGGCGGCGTCGTATCCTCGGCGGTGCTGGCCAATGCCCCACG
TGTATACCTAACGCCCTCCTCCACATTCATGACCAATCGCCAAATGGCGG
GAGTGGCGTCCACCGGAAGAATGAGCGGACAAGTCGTCGGTGGTTCATCT
GGCACAGCCTCAACAGCCGGTACCGTTCGCTATTTTTCGCAATTCAGCAA
AATGCAAACGGCCGGCGGACCCAGTTTGCAAAGGAAACTTGCCAACGGGG
ATACCATTGTTCTGGCAACCGGCAGTAAAAATATGTTCCTTACTAGCAGC
GAAAATAAGGCTAATCTGCCGACCGTCGCCAGCAATGGCAATGGTCTGAT
CACAGCCAAAATGGATCTATTGGAGGAGGAGGTCATGCAGTCGATAACTG
TGATTGATGACGATGACGAGGAGAAAAAGGAAGTCGCTGAAGACGAAGAA
GAGAGCAGCAATAATGCCAAACCCATTGACCTTCACCAGCCAATTGCTGA
TAATGAGCACGAGCTGGACATTGTGATAAACAATGTGGTCTGCTCGTTTA
GCGTCGGCTGTCACCTGAAGCTGCGCGAAATTGCGCTGCAGGGATCAAAT
GTGGAGTACCGTCGCGAGAACGGAATGGTGACAATGAAGCTCCGCCATCC
ATACACCACTGCCTCGATTTGGTCGTCGGGGAGGATTACCTGCACTGGTG
CCACTTCCGAGTCAATGGCCAAGGTCGCTGCACGCCGCTATGCCAGATGC
CTTGGCAAGCTGGGATTTCCCACTCGTTTCCTCAACTTTCGCATTGTCAA
CGTACTGGGCACCTGCAGCATGCCGTGGGCCATCAAGATCGTCAACTTTT
CGGAGCGCCATCGCGAGAACGCCAGCTACGAGCCCGAGCTGCATCCTGGA
GTGACTTACAAGATGCGCGATCCCGATCCAAAGGCCACCCTGAAGATCTT
CTCCACCGGCAGCGTAACAGTCACCGCGGCTAGCGTAAACCACGTTGAAT
CGGCTATCCAGCACATATACCCGCTGGTCTTTGATTTCCGCAAGCAACGT
TCGGCGGAGGAGCTGCAGCATCTGCGTCAAAAGCAGCGTCTGCAAGCCGG
CGGTGATCCCCACGAACTGGAGAAAAATGTCTTGGCCGATAACAAGACTG
CTTCCCTTGATAATATCTTTGTTAATACAACAGCGGCGCACTCTAAATCA
TCGTCGAATGACCAAACATCAGCACCCGCGACCATCTTGTCCAGCACAGT
TGATAGTATGCCTCGTCTGAAACAGATGGTCAACTATCACCAGATGATGA
AGCAAACCCAGGAAGAGCGCCGCCATATAATGTTTAATGGGGAGAAGGCC
AATCCGGCCTCCACCTCATCGGCGGCAGCAGCTCCCTCCACCTCCTCCTC
ATCGTCCTCATCCGGGGATAATATCTGTGCCAATGCCCGTCGCCGGGCCA
CCGAATGCTGGGCAACCAAGCTGCAGAATAAGCGTCCACGTTACAATGAT
CCCGGTACCACGGGCACAATTAACGCCGCATCGTCCACAGCATCAGCCGC
CACATCTTCGTTAGCCTCCCAGGCGACACATCTGCGTAATCCTCTCAAGA
CGGCCGCGTTGGCCAATGCACGTATGTTAGGCGCCAAGGTGACAACATGC
ACACGCAACAGCATAATCGTGCAGCAGCCGCAACGTATCCAAATGCAGCA
GCAGCAGCAACAGCTGCAACCGCAGCAGCAACAGACCAGCTTCTCGCCCA
GCGAATTCGATGTTGATGACTTGATCGAGGAGGAGGAGAACAACGAATTG
GATATGCCCTTCGCAAGCTTTCTAGACCAT

BO11453.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
Trf2-RJ 1899 CG18009-PJ 1..1896 17..1912 9480 100 Plus
Trf2-RE 5148 CG18009-PE 3250..5145 17..1912 9480 100 Plus
Trf2-RF 5148 CG18009-PF 3250..5145 17..1912 9480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Trf2-RJ 6934 CG18009-RJ 4016..5911 17..1912 9480 100 Plus
Trf2-RE 7131 CG18009-RE 4213..6108 17..1912 9480 100 Plus
Trf2-RF 9866 CG18009-RF 4132..6027 17..1912 9480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8428276..8429112 1076..1912 4185 100 Plus
X 23542271 X 8427087..8427888 17..818 4010 100 Plus
X 23542271 X 8427946..8428205 817..1076 1300 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:19:58 has no hits.

BO11453.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:35 Download gff for BO11453.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RE 3250..5145 17..1914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:35 Download gff for BO11453.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RF 4132..6027 17..1914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:06 Download gff for BO11453.complete
Subject Subject Range Query Range Percent Splice Strand
Trf2-RF 4132..6027 17..1914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:06 Download gff for BO11453.complete
Subject Subject Range Query Range Percent Splice Strand
X 8427087..8427887 17..817 100 -> Plus
X 8427947..8428205 818..1076 100 -> Plus
X 8428277..8429112 1077..1914 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:35 Download gff for BO11453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8321120..8321920 17..817 100 -> Plus
arm_X 8321980..8322238 818..1076 100 -> Plus
arm_X 8322310..8323145 1077..1914 99   Plus

BO11453.3prime Sequence

688 bp (616 high quality bases) assembled on 2006-04-19

> BO11453.3prime
ATGGTCTAGAAAGCTTGCGAAGGGCATATCCAATTCGTTGTTCTCCTCCT
CCTCGATCAAGTCATCAACATCGAATTCGCTGGGCGAGAAGCTGGTCTGT
TGCTGCTGCGGTTGCAGCTGTTGCTGCTGCTGCTGCATTTGGATACGTTG
CGGCTGCTGCACGATTATGCTGTTGCGTGTGCATGTTGTCACCTTGGCGC
CTAACATACGTGCATTGGCCAACGCGGCCGTCTTGAGAGGATTACGCAGA
TGTGTCGCCTGGGAGGCTAACGAAGATGTGGCGGCTGATGCTGTGGACGA
TGCGGCGTTAATTGTGCCCGTGGTACCGGGATCATTGTAACGTGGACGCT
TATTCTGCAGCTTGGTTGCCCAGCATTCGGTGGCCCGGCGACGGGCATTG
GCACAGATATTATCCCCGGATGAGGACGATGAGGAGGAGGTGGAGGGAGC
TGCTGCCGCCGATGAGGTGGAGGCCGGATTGGCCTTCTCCCCATTAAACA
TTATATGGCGGCGCTCTTCCTGGGTTTGCTTCATCATCTGGTGATAGTTG
ACCATCTGTTTCAGACGAGGCATACTATCAACTGTGCTGGACAAGATGGT
CGCGGGTGCTGATGTTTGGTCATTCAACGATGATTTTAGAGTGCGCCGCT
GTTGTATTAACAAAGATATTAACAAGGGAAGCAGTCTT

BO11453.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG18009-PD 1899 Trf2-RD 1279..1896 636..19 3065 99.8 Minus
CG18009-PA 1899 Trf2-RA 1279..1896 636..19 3065 99.8 Minus
CG18009-PD 1899 Trf2-RD 1228..1281 688..635 245 98.1 Minus
CG18009-PA 1899 Trf2-RA 1228..1281 688..635 245 98.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
Trf2-RJ 6934 CG18009-RJ 5243..5911 688..19 3295 99.6 Minus
Trf2-RE 7131 CG18009-RE 5440..6108 688..19 3295 99.6 Minus
Trf2-RF 9866 CG18009-RF 5359..6027 688..19 3295 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8428444..8429112 688..19 3270 99.6 Minus
Blast to na_te.dros performed on 2015-02-10 22:44:06 has no hits.

BO11453.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:59 Download gff for BO11453.3prime
Subject Subject Range Query Range Percent Splice Strand
Trf2-PD 1228..1899 15..688 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:53 Download gff for BO11453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18009-PA 1228..1899 15..688 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:42 Download gff for BO11453.3prime
Subject Subject Range Query Range Percent Splice Strand
Trf2-RF 5359..6033 12..688 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:18 Download gff for BO11453.3prime
Subject Subject Range Query Range Percent Splice Strand
Trf2-RF 5359..6033 12..688 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:18 Download gff for BO11453.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8428444..8429118 12..688 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:42 Download gff for BO11453.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8322477..8323151 12..688 99   Minus

BO11453.5prime Sequence

680 bp (676 high quality bases) assembled on 2006-04-19

> BO11453.5prime
GAAGTTATCAGTCGACATGCAAAACGATATGGTCAGCATACCGGTGGCCA
ATTTGAACGGCGGCCTTAAAGCGGCCAGCAGCGGTTCCGGAGTTGGTGTA
GTGACCTCCGGCGGCGTCGTATCCTCGGCGGTGCTGGCCAATGCCCCACG
TGTATACCTAACGCCCTCCTCCACATTCATGACCAATCGCCAAATGGCGG
GAGTGGCGTCCACCGGAAGAATGAGCGGACAAGTCGTCGGTGGTTCATCT
GGCACAGCCTCAACAGCCGGTACCGTTCGCTATTTTTCGCAATTCAGCAA
AATGCAAACGGCCGGCGGACCCAGTTTGCAAAGGAAACTTGCCAACGGGG
ATACCATTGTTCTGGCAACCGGCAGTAAAAATATGTTCCTTACTAGCAGC
GAAAATAAGGCTAATCTGCCGACCGTCGCCAGCAATGGCAATGGTCTGAT
CACAGCCAAAATGGATCTATTGGAGGAGGAGGTCATGCAGTCGATAACTG
TGATTGATGACGATGACGAGGAGAAAAAGGAAGTCGCTGAAGACGAAGAA
GAGAGCAGCAATAATGCCAAACCCATTGACCTTCACCAGCCAATTGCTGA
TAATGAGCACGAGCTGGACATTGTGATAAACAATGTGGTCTGCTCGTTTA
GCGTCGGCTGTCACCTGAAGCTGCGCGAAA

BO11453.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG18009-PD 1899 Trf2-RD 1..664 17..680 3320 100 Plus
CG18009-PA 1899 Trf2-RA 1..664 17..680 3320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Trf2-RJ 6934 CG18009-RJ 4016..4679 17..680 3320 100 Plus
Trf2-RE 7131 CG18009-RE 4213..4876 17..680 3320 100 Plus
Trf2-RF 9866 CG18009-RF 4132..4795 17..680 3320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8427087..8427750 17..680 3320 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:06:58 has no hits.

BO11453.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:00 Download gff for BO11453.5prime
Subject Subject Range Query Range Percent Splice Strand
Trf2-PD 1..661 17..677 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:55 Download gff for BO11453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18009-PA 1..661 17..677 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:50:43 Download gff for BO11453.5prime
Subject Subject Range Query Range Percent Splice Strand
Trf2-RF 4132..4792 17..677 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:55:54 Download gff for BO11453.5prime
Subject Subject Range Query Range Percent Splice Strand
Trf2-RF 4132..4792 17..677 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:55:54 Download gff for BO11453.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8427087..8427747 17..677 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:50:43 Download gff for BO11453.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8321120..8321780 17..677 100   Plus

BO11453.pep Sequence

Translation from 16 to 1930

> BO11453.pep
MQNDMVSIPVANLNGGLKAASSGSGVGVVTSGGVVSSAVLANAPRVYLTP
SSTFMTNRQMAGVASTGRMSGQVVGGSSGTASTAGTVRYFSQFSKMQTAG
GPSLQRKLANGDTIVLATGSKNMFLTSSENKANLPTVASNGNGLITAKMD
LLEEEVMQSITVIDDDDEEKKEVAEDEEESSNNAKPIDLHQPIADNEHEL
DIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTAS
IWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTC
SMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSV
TVTAASVNHVESAIQHIYPLVFDFRKQRSAEELQHLRQKQRLQAGGDPHE
LEKNVLADNKTASLDNIFVNTTAAHSKSSSNDQTSAPATILSSTVDSMPR
LKQMVNYHQMMKQTQEERRHIMFNGEKANPASTSSAAAAPSTSSSSSSSG
DNICANARRRATECWATKLQNKRPRYNDPGTTGTINAASSTASAATSSLA
SQATHLRNPLKTAALANARMLGAKVTTCTRNSIIVQQPQRIQMQQQQQQL
QPQQQQTSFSPSEFDVDDLIEEEENNELDMPFASFLDH

BO11453.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
Trf2-PJ 632 CG18009-PJ 1..632 1..632 3204 100 Plus
Trf2-PE 1715 CG18009-PE 1084..1715 1..632 3204 100 Plus
Trf2-PF 1715 CG18009-PF 1084..1715 1..632 3204 100 Plus
Trf2-PH 632 CG18009-PH 1..632 1..632 3204 100 Plus
Trf2-PG 1715 CG18009-PG 1084..1715 1..632 3204 100 Plus