Clone Sequence Records
BO11453.complete Sequence
1930 bp assembled on 2010-04-13
> BO11453.complete
GAAGTTATCAGTCGACATGCAAAACGATATGGTCAGCATACCGGTGGCCA
ATTTGAACGGCGGCCTTAAAGCGGCCAGCAGCGGTTCCGGAGTTGGTGTA
GTGACCTCCGGCGGCGTCGTATCCTCGGCGGTGCTGGCCAATGCCCCACG
TGTATACCTAACGCCCTCCTCCACATTCATGACCAATCGCCAAATGGCGG
GAGTGGCGTCCACCGGAAGAATGAGCGGACAAGTCGTCGGTGGTTCATCT
GGCACAGCCTCAACAGCCGGTACCGTTCGCTATTTTTCGCAATTCAGCAA
AATGCAAACGGCCGGCGGACCCAGTTTGCAAAGGAAACTTGCCAACGGGG
ATACCATTGTTCTGGCAACCGGCAGTAAAAATATGTTCCTTACTAGCAGC
GAAAATAAGGCTAATCTGCCGACCGTCGCCAGCAATGGCAATGGTCTGAT
CACAGCCAAAATGGATCTATTGGAGGAGGAGGTCATGCAGTCGATAACTG
TGATTGATGACGATGACGAGGAGAAAAAGGAAGTCGCTGAAGACGAAGAA
GAGAGCAGCAATAATGCCAAACCCATTGACCTTCACCAGCCAATTGCTGA
TAATGAGCACGAGCTGGACATTGTGATAAACAATGTGGTCTGCTCGTTTA
GCGTCGGCTGTCACCTGAAGCTGCGCGAAATTGCGCTGCAGGGATCAAAT
GTGGAGTACCGTCGCGAGAACGGAATGGTGACAATGAAGCTCCGCCATCC
ATACACCACTGCCTCGATTTGGTCGTCGGGGAGGATTACCTGCACTGGTG
CCACTTCCGAGTCAATGGCCAAGGTCGCTGCACGCCGCTATGCCAGATGC
CTTGGCAAGCTGGGATTTCCCACTCGTTTCCTCAACTTTCGCATTGTCAA
CGTACTGGGCACCTGCAGCATGCCGTGGGCCATCAAGATCGTCAACTTTT
CGGAGCGCCATCGCGAGAACGCCAGCTACGAGCCCGAGCTGCATCCTGGA
GTGACTTACAAGATGCGCGATCCCGATCCAAAGGCCACCCTGAAGATCTT
CTCCACCGGCAGCGTAACAGTCACCGCGGCTAGCGTAAACCACGTTGAAT
CGGCTATCCAGCACATATACCCGCTGGTCTTTGATTTCCGCAAGCAACGT
TCGGCGGAGGAGCTGCAGCATCTGCGTCAAAAGCAGCGTCTGCAAGCCGG
CGGTGATCCCCACGAACTGGAGAAAAATGTCTTGGCCGATAACAAGACTG
CTTCCCTTGATAATATCTTTGTTAATACAACAGCGGCGCACTCTAAATCA
TCGTCGAATGACCAAACATCAGCACCCGCGACCATCTTGTCCAGCACAGT
TGATAGTATGCCTCGTCTGAAACAGATGGTCAACTATCACCAGATGATGA
AGCAAACCCAGGAAGAGCGCCGCCATATAATGTTTAATGGGGAGAAGGCC
AATCCGGCCTCCACCTCATCGGCGGCAGCAGCTCCCTCCACCTCCTCCTC
ATCGTCCTCATCCGGGGATAATATCTGTGCCAATGCCCGTCGCCGGGCCA
CCGAATGCTGGGCAACCAAGCTGCAGAATAAGCGTCCACGTTACAATGAT
CCCGGTACCACGGGCACAATTAACGCCGCATCGTCCACAGCATCAGCCGC
CACATCTTCGTTAGCCTCCCAGGCGACACATCTGCGTAATCCTCTCAAGA
CGGCCGCGTTGGCCAATGCACGTATGTTAGGCGCCAAGGTGACAACATGC
ACACGCAACAGCATAATCGTGCAGCAGCCGCAACGTATCCAAATGCAGCA
GCAGCAGCAACAGCTGCAACCGCAGCAGCAACAGACCAGCTTCTCGCCCA
GCGAATTCGATGTTGATGACTTGATCGAGGAGGAGGAGAACAACGAATTG
GATATGCCCTTCGCAAGCTTTCTAGACCAT
BO11453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf2-RJ | 1899 | CG18009-PJ | 1..1896 | 17..1912 | 9480 | 100 | Plus |
Trf2-RE | 5148 | CG18009-PE | 3250..5145 | 17..1912 | 9480 | 100 | Plus |
Trf2-RF | 5148 | CG18009-PF | 3250..5145 | 17..1912 | 9480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf2-RJ | 6934 | CG18009-RJ | 4016..5911 | 17..1912 | 9480 | 100 | Plus |
Trf2-RE | 7131 | CG18009-RE | 4213..6108 | 17..1912 | 9480 | 100 | Plus |
Trf2-RF | 9866 | CG18009-RF | 4132..6027 | 17..1912 | 9480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8428276..8429112 | 1076..1912 | 4185 | 100 | Plus |
X | 23542271 | X | 8427087..8427888 | 17..818 | 4010 | 100 | Plus |
X | 23542271 | X | 8427946..8428205 | 817..1076 | 1300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:19:58 has no hits.
BO11453.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:35 Download gff for
BO11453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf2-RE | 3250..5145 | 17..1914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:35 Download gff for
BO11453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf2-RF | 4132..6027 | 17..1914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:06 Download gff for
BO11453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf2-RF | 4132..6027 | 17..1914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:06 Download gff for
BO11453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8427087..8427887 | 17..817 | 100 | -> | Plus |
X | 8427947..8428205 | 818..1076 | 100 | -> | Plus |
X | 8428277..8429112 | 1077..1914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:35 Download gff for
BO11453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8321120..8321920 | 17..817 | 100 | -> | Plus |
arm_X | 8321980..8322238 | 818..1076 | 100 | -> | Plus |
arm_X | 8322310..8323145 | 1077..1914 | 99 | | Plus |
BO11453.3prime Sequence
688 bp (616 high quality bases) assembled on 2006-04-19
> BO11453.3prime
ATGGTCTAGAAAGCTTGCGAAGGGCATATCCAATTCGTTGTTCTCCTCCT
CCTCGATCAAGTCATCAACATCGAATTCGCTGGGCGAGAAGCTGGTCTGT
TGCTGCTGCGGTTGCAGCTGTTGCTGCTGCTGCTGCATTTGGATACGTTG
CGGCTGCTGCACGATTATGCTGTTGCGTGTGCATGTTGTCACCTTGGCGC
CTAACATACGTGCATTGGCCAACGCGGCCGTCTTGAGAGGATTACGCAGA
TGTGTCGCCTGGGAGGCTAACGAAGATGTGGCGGCTGATGCTGTGGACGA
TGCGGCGTTAATTGTGCCCGTGGTACCGGGATCATTGTAACGTGGACGCT
TATTCTGCAGCTTGGTTGCCCAGCATTCGGTGGCCCGGCGACGGGCATTG
GCACAGATATTATCCCCGGATGAGGACGATGAGGAGGAGGTGGAGGGAGC
TGCTGCCGCCGATGAGGTGGAGGCCGGATTGGCCTTCTCCCCATTAAACA
TTATATGGCGGCGCTCTTCCTGGGTTTGCTTCATCATCTGGTGATAGTTG
ACCATCTGTTTCAGACGAGGCATACTATCAACTGTGCTGGACAAGATGGT
CGCGGGTGCTGATGTTTGGTCATTCAACGATGATTTTAGAGTGCGCCGCT
GTTGTATTAACAAAGATATTAACAAGGGAAGCAGTCTT
BO11453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18009-PD | 1899 | Trf2-RD | 1279..1896 | 636..19 | 3065 | 99.8 | Minus |
CG18009-PA | 1899 | Trf2-RA | 1279..1896 | 636..19 | 3065 | 99.8 | Minus |
CG18009-PD | 1899 | Trf2-RD | 1228..1281 | 688..635 | 245 | 98.1 | Minus |
CG18009-PA | 1899 | Trf2-RA | 1228..1281 | 688..635 | 245 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf2-RJ | 6934 | CG18009-RJ | 5243..5911 | 688..19 | 3295 | 99.6 | Minus |
Trf2-RE | 7131 | CG18009-RE | 5440..6108 | 688..19 | 3295 | 99.6 | Minus |
Trf2-RF | 9866 | CG18009-RF | 5359..6027 | 688..19 | 3295 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8428444..8429112 | 688..19 | 3270 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:44:06 has no hits.
BO11453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:06:59 Download gff for
BO11453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf2-PD | 1228..1899 | 15..688 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:53 Download gff for
BO11453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18009-PA | 1228..1899 | 15..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:42 Download gff for
BO11453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf2-RF | 5359..6033 | 12..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:18 Download gff for
BO11453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf2-RF | 5359..6033 | 12..688 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:18 Download gff for
BO11453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8428444..8429118 | 12..688 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:42 Download gff for
BO11453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8322477..8323151 | 12..688 | 99 | | Minus |
BO11453.5prime Sequence
680 bp (676 high quality bases) assembled on 2006-04-19
> BO11453.5prime
GAAGTTATCAGTCGACATGCAAAACGATATGGTCAGCATACCGGTGGCCA
ATTTGAACGGCGGCCTTAAAGCGGCCAGCAGCGGTTCCGGAGTTGGTGTA
GTGACCTCCGGCGGCGTCGTATCCTCGGCGGTGCTGGCCAATGCCCCACG
TGTATACCTAACGCCCTCCTCCACATTCATGACCAATCGCCAAATGGCGG
GAGTGGCGTCCACCGGAAGAATGAGCGGACAAGTCGTCGGTGGTTCATCT
GGCACAGCCTCAACAGCCGGTACCGTTCGCTATTTTTCGCAATTCAGCAA
AATGCAAACGGCCGGCGGACCCAGTTTGCAAAGGAAACTTGCCAACGGGG
ATACCATTGTTCTGGCAACCGGCAGTAAAAATATGTTCCTTACTAGCAGC
GAAAATAAGGCTAATCTGCCGACCGTCGCCAGCAATGGCAATGGTCTGAT
CACAGCCAAAATGGATCTATTGGAGGAGGAGGTCATGCAGTCGATAACTG
TGATTGATGACGATGACGAGGAGAAAAAGGAAGTCGCTGAAGACGAAGAA
GAGAGCAGCAATAATGCCAAACCCATTGACCTTCACCAGCCAATTGCTGA
TAATGAGCACGAGCTGGACATTGTGATAAACAATGTGGTCTGCTCGTTTA
GCGTCGGCTGTCACCTGAAGCTGCGCGAAA
BO11453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18009-PD | 1899 | Trf2-RD | 1..664 | 17..680 | 3320 | 100 | Plus |
CG18009-PA | 1899 | Trf2-RA | 1..664 | 17..680 | 3320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf2-RJ | 6934 | CG18009-RJ | 4016..4679 | 17..680 | 3320 | 100 | Plus |
Trf2-RE | 7131 | CG18009-RE | 4213..4876 | 17..680 | 3320 | 100 | Plus |
Trf2-RF | 9866 | CG18009-RF | 4132..4795 | 17..680 | 3320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8427087..8427750 | 17..680 | 3320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:06:58 has no hits.
BO11453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:00 Download gff for
BO11453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf2-PD | 1..661 | 17..677 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:30:55 Download gff for
BO11453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18009-PA | 1..661 | 17..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:50:43 Download gff for
BO11453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf2-RF | 4132..4792 | 17..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:55:54 Download gff for
BO11453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf2-RF | 4132..4792 | 17..677 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:55:54 Download gff for
BO11453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8427087..8427747 | 17..677 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:50:43 Download gff for
BO11453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8321120..8321780 | 17..677 | 100 | | Plus |
BO11453.pep Sequence
Translation from 16 to 1930
> BO11453.pep
MQNDMVSIPVANLNGGLKAASSGSGVGVVTSGGVVSSAVLANAPRVYLTP
SSTFMTNRQMAGVASTGRMSGQVVGGSSGTASTAGTVRYFSQFSKMQTAG
GPSLQRKLANGDTIVLATGSKNMFLTSSENKANLPTVASNGNGLITAKMD
LLEEEVMQSITVIDDDDEEKKEVAEDEEESSNNAKPIDLHQPIADNEHEL
DIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYTTAS
IWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTC
SMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSV
TVTAASVNHVESAIQHIYPLVFDFRKQRSAEELQHLRQKQRLQAGGDPHE
LEKNVLADNKTASLDNIFVNTTAAHSKSSSNDQTSAPATILSSTVDSMPR
LKQMVNYHQMMKQTQEERRHIMFNGEKANPASTSSAAAAPSTSSSSSSSG
DNICANARRRATECWATKLQNKRPRYNDPGTTGTINAASSTASAATSSLA
SQATHLRNPLKTAALANARMLGAKVTTCTRNSIIVQQPQRIQMQQQQQQL
QPQQQQTSFSPSEFDVDDLIEEEENNELDMPFASFLDH
BO11453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf2-PJ | 632 | CG18009-PJ | 1..632 | 1..632 | 3204 | 100 | Plus |
Trf2-PE | 1715 | CG18009-PE | 1084..1715 | 1..632 | 3204 | 100 | Plus |
Trf2-PF | 1715 | CG18009-PF | 1084..1715 | 1..632 | 3204 | 100 | Plus |
Trf2-PH | 632 | CG18009-PH | 1..632 | 1..632 | 3204 | 100 | Plus |
Trf2-PG | 1715 | CG18009-PG | 1084..1715 | 1..632 | 3204 | 100 | Plus |