Clone BO11463 Report

Search the DGRC for BO11463

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:114
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG14302-RA
Protein status:BO11463.pep: validated full length
Sequenced Size:247

Clone Sequence Records

BO11463.3prime Sequence

245 bp (244 high quality bases) assembled on 2006-04-19

> BO11463.3prime
ATGGTCTAGAAAGCTTGCTCCCTAAATGGGATAGATGGTCGACGTTTCTG
GCGTGGCATTTGTGGTCTCAGCCTGCGGCGGACCAGAGAATCCCGTGCTA
GTCGTACCATCGACGGGAGCACCAGTTGGCGGAGTTGGCTCCGGGGTGGC
AAGACTGGAGAAAGCCGACACCCACGAGGTGCACAGCATGAAGGCCAGAC
AGAGGCTAAACAGCAGGTTGAAGAATTTCATGTCGACTGATAACT

BO11463.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-PA 216 CG14302-RA 1..209 231..23 1045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-RA 281 CG14302-RA 20..238 237..19 1065 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18732786..18732991 224..19 1015 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 20:19:22 has no hits.

BO11463.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:18 Download gff for BO11463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-PA 1..216 18..231 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:31:21 Download gff for BO11463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-PA 1..216 18..231 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:36:56 Download gff for BO11463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 1..218 19..236 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:09:11 Download gff for BO11463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 20..238 19..237 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:09:11 Download gff for BO11463.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18732781..18732991 19..230 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:36:56 Download gff for BO11463.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14558503..14558713 19..230 98   Minus

BO11463.5prime Sequence

245 bp (244 high quality bases) assembled on 2006-04-19

> BO11463.5prime
GAAGTTATCAGTCGACATGAAATTCTTCAACCTGCTGTTTAGCCTCTGTC
TGGCCTTCATGCTGTGCACCTCGTGGGTGTCGGCTTTCTCCAGTCTTGCC
ACCCCGGAGCCAACTCCGCCAACTGGTGCTCCCGTCGATGGTACGACTAG
CACGGGATTCTCTGGTCCGCCGCAGGCTGAGACCACAAATGCCACGCCAG
AAACGTCGACCATCTATCCCATTTACGGAGCAAGCTTTCTAGACC

BO11463.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-PA 216 CG14302-RA 1..213 17..229 1065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-RA 281 CG14302-RA 20..238 11..229 1080 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18732786..18732991 24..229 1030 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:48:53 has no hits.

BO11463.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:19 Download gff for BO11463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-PA 1..216 17..230 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:31:22 Download gff for BO11463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-PA 1..216 17..230 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:01:15 Download gff for BO11463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 1..218 12..229 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:27 Download gff for BO11463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 20..238 11..229 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:27 Download gff for BO11463.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18732781..18732991 18..229 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:01:15 Download gff for BO11463.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14558503..14558713 18..229 98   Plus

BO11463.complete Sequence

247 bp assembled on 2006-10-10

GenBank Submission: FJ632090

> BO11463.complete
GAAGTTATCAGTCGACATGAAATTCTTCAACCTGCTGTTTAGCCTCTGTC
TGGCCTTCATGCTGTGCACCTCGTGGGTGTCGGCTTTCTCCAGTCTTGCC
ACCCCGGAGCCAACTCCGCCAACTGGTGCTCCCGTCGATGGTACGACTAG
CACGGGATTCTCTGGTCCGCCGCAGGCTGAGACCACAAATGCCACGCCAG
AAACGTCGACCATCTATCCCATTTACGGAGCAAGCTTTCTAGACCAT

BO11463.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-RA 216 CG14302-PA 1..213 17..229 1065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-RA 281 CG14302-RA 20..238 11..229 1080 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18732786..18732991 24..229 1030 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:37:30 has no hits.

BO11463.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:16 Download gff for BO11463.complete
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 1..218 12..229 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:50 Download gff for BO11463.complete
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 6..218 17..231 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:44 Download gff for BO11463.complete
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 1..218 12..229 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:27 Download gff for BO11463.complete
Subject Subject Range Query Range Percent Splice Strand
CG14302-RA 26..238 17..231 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:27 Download gff for BO11463.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18732780..18732991 17..231 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:50 Download gff for BO11463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14558502..14558713 17..231 97   Plus

BO11463.pep Sequence

Translation from 16 to 247

> BO11463.pep
MKFFNLLFSLCLAFMLCTSWVSAFSSLATPEPTPPTGAPVDGTTSTGFSG
PPQAETTNATPETSTIYPIYGASFLDH

BO11463.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14302-PA 71 CG14302-PA 1..71 1..71 381 100 Plus