Clone Sequence Records
BO11467.3prime Sequence
224 bp (223 high quality bases) assembled on 2006-04-19
> BO11467.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTCCCGACTTCTTGATGCCGCCTCCTA
CGAGAGGACCCTTCTTTGAGGCGTTCGCCTTGGCCGCCTCCAGAGCCTTC
TGCTGCTCCTTCTGCTTTTGCTTGAAGGCCATGTCGTCCTCGTCCAGGTC
TTTGGAGTCCTTCTTCGGCGCCTTCAGAGGCTTCTTCTTACCGCCCTCGC
GTCCAGACATGTCGACTGATAACT
BO11467.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13364-PA | 195 | CG13364-RA | 1..192 | 210..19 | 960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13364-RA | 387 | CG13364-RA | 54..252 | 210..12 | 965 | 99 | Minus |
CG16824-RA | 407 | CG16824-RA | 71..262 | 210..19 | 555 | 85.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 624892..625090 | 12..210 | 965 | 99 | Plus |
2L | 23513712 | 2L | 13293079..13293270 | 210..19 | 555 | 85.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:15:37 has no hits.
BO11467.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:25 Download gff for
BO11467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-PA | 1..195 | 16..210 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:31:32 Download gff for
BO11467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-PA | 1..195 | 16..210 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:29:55 Download gff for
BO11467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-RA | 47..252 | 12..217 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:34:15 Download gff for
BO11467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-RA | 47..252 | 12..217 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:34:15 Download gff for
BO11467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 624892..625093 | 12..217 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:29:55 Download gff for
BO11467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 518925..519126 | 12..217 | 97 | | Plus |
BO11467.5prime Sequence
224 bp (223 high quality bases) assembled on 2006-04-19
> BO11467.5prime
GAAGTTATCAGTCGACATGTCTGGACGCGAGGGCGGTAAGAAGAAGCCTC
TGAAGGCGCCGAAGAAGGACTCCAAAGACCTGGACGAGGACGACATGGCC
TTCAAGCAAAAGCAGAAGGAGCAGCAGAAGGCTCTGGAGGCGGCCAAGGC
GAACGCCTCAAAGAAGGGTCCTCTCGTAGGAGGCGGCATCAAGAAGTCGG
GAAAGAAGGCAAGCTTTCTAGACC
BO11467.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13364-PA | 195 | CG13364-RA | 1..192 | 17..208 | 960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13364-RA | 387 | CG13364-RA | 54..252 | 17..215 | 965 | 99 | Plus |
CG16824-RA | 407 | CG16824-RA | 71..262 | 17..208 | 555 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 624892..625090 | 215..17 | 965 | 99 | Minus |
2L | 23513712 | 2L | 13293079..13293270 | 17..208 | 555 | 85.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:24:07 has no hits.
BO11467.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:27 Download gff for
BO11467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-PA | 1..195 | 17..211 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:31:34 Download gff for
BO11467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-PA | 1..195 | 17..211 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:05:17 Download gff for
BO11467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-RA | 47..252 | 10..215 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:54 Download gff for
BO11467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-RA | 47..252 | 10..215 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:54 Download gff for
BO11467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 624892..625093 | 10..215 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:05:17 Download gff for
BO11467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 518925..519126 | 10..215 | 97 | | Minus |
BO11467.complete Sequence
226 bp assembled on 2006-10-10
GenBank Submission: FJ632092
> BO11467.complete
GAAGTTATCAGTCGACATGTCTGGACGCGAGGGCGGTAAGAAGAAGCCTC
TGAAGGCGCCGAAGAAGGACTCCAAAGACCTGGACGAGGACGACATGGCC
TTCAAGCAAAAGCAGAAGGAGCAGCAGAAGGCTCTGGAGGCGGCCAAGGC
GAACGCCTCAAAGAAGGGTCCTCTCGTAGGAGGCGGCATCAAGAAGTCGG
GAAAGAAGGCAAGCTTTCTAGACCAT
BO11467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13364-RA | 195 | CG13364-PA | 1..192 | 17..208 | 960 | 100 | Plus |
CG16824-RA | 195 | CG16824-PA | 1..192 | 17..208 | 555 | 85.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13364-RA | 387 | CG13364-RA | 54..252 | 17..215 | 965 | 99 | Plus |
CG16824-RA | 407 | CG16824-RA | 71..262 | 17..208 | 555 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 624892..625090 | 215..17 | 965 | 99 | Minus |
2L | 23513712 | 2L | 13293079..13293270 | 17..208 | 555 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:14:11 has no hits.
BO11467.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:35 Download gff for
BO11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-RA | 1..195 | 17..211 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:39 Download gff for
BO11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-RA | 45..250 | 10..215 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:19 Download gff for
BO11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-RA | 54..245 | 17..210 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:35 Download gff for
BO11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-RA | 45..250 | 10..215 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:22 Download gff for
BO11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13364-RA | 54..245 | 17..210 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:22 Download gff for
BO11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 624896..625090 | 17..210 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:19 Download gff for
BO11467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 518929..519123 | 17..210 | 98 | | Minus |
BO11467.pep Sequence
Translation from 16 to 226
> BO11467.pep
MSGREGGKKKPLKAPKKDSKDLDEDDMAFKQKQKEQQKALEAAKANASKK
GPLVGGGIKKSGKKASFLDH
BO11467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13364-PA | 64 | CG13364-PA | 1..64 | 1..64 | 324 | 100 | Plus |
CG16824-PA | 64 | CG16824-PA | 1..64 | 1..64 | 301 | 90.6 | Plus |