Clone Sequence Records
BO11471.3prime Sequence
242 bp (241 high quality bases) assembled on 2006-04-19
> BO11471.3prime
ATGGTCTAGAAAGCTTGCGCATCCTTCGCACCAGCACTTCAGACTGGGGC
TGCAGTGGCCACTGGAGCGTCCCTCCTCCTTGCACACACGACGACAGGTC
TCGTTGTCCCAGACGGCACAGGGACCCTTGTATCTTCCGGACAGGCAGTC
GGCATCGGCCTCGTTGGCTCCCAGGACCACCAGCATCAGGACAGCGAAGA
GGGCGAACAAGTACTTGATCTGCATCATGTCGACTGATAACT
BO11471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10810-PA | 213 | Drs-RA | 1..210 | 228..19 | 1050 | 100 | Minus |
CG10812-PA | 210 | dro5-RA | 103..207 | 123..19 | 375 | 94.2 | Minus |
CG32268-PA | 219 | dro6-RA | 53..131 | 176..98 | 220 | 91.1 | Minus |
CG32279-PA | 213 | dro2-RA | 165..210 | 64..19 | 180 | 95.6 | Minus |
CG32279-PA | 213 | dro2-RA | 73..130 | 156..99 | 165 | 91.3 | Minus |
CG32274-PA | 210 | Drs-l-RA | 161..207 | 65..19 | 160 | 93.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drs-RA | 387 | CG10810-RA | 64..273 | 228..19 | 1050 | 100 | Minus |
Drsl5-RA | 364 | CG10812-RA | 104..261 | 176..19 | 550 | 89.9 | Minus |
Drsl2-RA | 333 | CG32279-RA | 17..236 | 238..19 | 470 | 80.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3369619..3369828 | 228..19 | 1050 | 100 | Minus |
3L | 28110227 | 3L | 3316884..3317041 | 176..19 | 550 | 89.9 | Minus |
3L | 28110227 | 3L | 3314365..3314584 | 238..19 | 470 | 80.9 | Minus |
3L | 28110227 | 3L | 3336202..3336362 | 68..228 | 400 | 83.2 | Plus |
3L | 28110227 | 3L | 3335582..3335759 | 19..196 | 245 | 75.8 | Plus |
3L | 28110227 | 3L | 3315784..3315843 | 84..25 | 180 | 86.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:23:07 has no hits.
BO11471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:34 Download gff for
BO11471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-PA | 1..213 | 15..228 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:31:43 Download gff for
BO11471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10810-PA | 1..213 | 15..228 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:56:03 Download gff for
BO11471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 64..276 | 15..228 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:17 Download gff for
BO11471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 64..276 | 15..228 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:17 Download gff for
BO11471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3369619..3369831 | 15..228 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:56:03 Download gff for
BO11471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3369619..3369831 | 15..228 | 99 | | Minus |
BO11471.5prime Sequence
242 bp (241 high quality bases) assembled on 2006-04-19
> BO11471.5prime
GAAGTTATCAGTCGACATGATGCAGATCAAGTACTTGTTCGCCCTCTTCG
CTGTCCTGATGCTGGTGGTCCTGGGAGCCAACGAGGCCGATGCCGACTGC
CTGTCCGGAAGATACAAGGGTCCCTGTGCCGTCTGGGACAACGAGACCTG
TCGTCGTGTGTGCAAGGAGGAGGGACGCTCCAGTGGCCACTGCAGCCCCA
GTCTGAAGTGCTGGTGCGAAGGATGCGCAAGCTTTCTAGACC
BO11471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10810-PA | 213 | Drs-RA | 1..210 | 17..226 | 1050 | 100 | Plus |
CG10812-PA | 210 | dro5-RA | 103..207 | 122..226 | 375 | 94.2 | Plus |
CG32268-PA | 219 | dro6-RA | 53..131 | 69..147 | 220 | 91.1 | Plus |
CG32279-PA | 213 | dro2-RA | 165..210 | 181..226 | 180 | 95.6 | Plus |
CG32279-PA | 213 | dro2-RA | 73..130 | 89..146 | 165 | 91.3 | Plus |
CG32274-PA | 210 | Drs-l-RA | 161..207 | 180..226 | 160 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drs-RA | 387 | CG10810-RA | 64..273 | 17..226 | 1050 | 100 | Plus |
Drsl5-RA | 364 | CG10812-RA | 104..261 | 69..226 | 550 | 89.9 | Plus |
Drsl2-RA | 333 | CG32279-RA | 17..236 | 7..226 | 470 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3369619..3369828 | 17..226 | 1050 | 100 | Plus |
3L | 28110227 | 3L | 3316884..3317041 | 69..226 | 550 | 89.9 | Plus |
3L | 28110227 | 3L | 3314365..3314584 | 7..226 | 470 | 80.9 | Plus |
3L | 28110227 | 3L | 3336202..3336362 | 177..17 | 400 | 83.2 | Minus |
3L | 28110227 | 3L | 3335582..3335759 | 226..49 | 245 | 75.8 | Minus |
3L | 28110227 | 3L | 3315784..3315843 | 161..220 | 180 | 86.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:56:28 has no hits.
BO11471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:35 Download gff for
BO11471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-PA | 1..213 | 17..230 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:31:44 Download gff for
BO11471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10810-PA | 1..213 | 17..230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 15:00:05 Download gff for
BO11471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 64..276 | 17..230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:35 Download gff for
BO11471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 64..276 | 17..230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:35 Download gff for
BO11471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3369619..3369831 | 17..230 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 15:00:05 Download gff for
BO11471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3369619..3369831 | 17..230 | 99 | | Plus |
BO11471.complete Sequence
244 bp assembled on 2007-06-22
GenBank Submission: FJ632093
> BO11471.complete
GAAGTTATCAGTCGACATGATGCAGATCAAGTACTTGTTCGCCCTCTTCG
CTGTCCTGATGCTGGTGGTCCTGGGAGCCAACGAGGCCGATGCCGACTGC
CTGTCCGGAAGATACAAGGGTCCCTGTGCCGTCTGGGACAACGAGACCTG
TCGTCGTGTGTGCAAGGAGGAGGGACGCTCCAGTGGCCACTGCAGCCCCA
GTCTGAAGTGCTGGTGCGAAGGATGCGCAAGCTTTCTAGACCAT
BO11471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drs-RA | 213 | CG10810-PA | 1..210 | 17..226 | 1050 | 100 | Plus |
Drsl5-RA | 210 | CG10812-PA | 50..207 | 69..226 | 550 | 89.9 | Plus |
Drsl2-RA | 213 | CG32279-PA | 1..210 | 17..226 | 465 | 81.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drs-RA | 387 | CG10810-RA | 64..273 | 17..226 | 1050 | 100 | Plus |
Drsl5-RA | 364 | CG10812-RA | 104..261 | 69..226 | 550 | 89.9 | Plus |
Drsl2-RA | 333 | CG32279-RA | 17..236 | 7..226 | 470 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3369619..3369828 | 17..226 | 1050 | 100 | Plus |
3L | 28110227 | 3L | 3316884..3317041 | 69..226 | 550 | 89.9 | Plus |
3L | 28110227 | 3L | 3314365..3314584 | 7..226 | 470 | 80.9 | Plus |
3L | 28110227 | 3L | 3336202..3336362 | 177..17 | 400 | 83.2 | Minus |
3L | 28110227 | 3L | 3335582..3335759 | 226..49 | 245 | 75.8 | Minus |
3L | 28110227 | 3L | 3315784..3315843 | 161..220 | 180 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:36:53 has no hits.
BO11471.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:48 Download gff for
BO11471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 1..213 | 17..230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:46 Download gff for
BO11471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 51..263 | 17..230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:53 Download gff for
BO11471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 64..273 | 17..228 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:48 Download gff for
BO11471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 51..263 | 17..230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:28 Download gff for
BO11471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drs-RA | 64..273 | 17..228 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:28 Download gff for
BO11471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3369619..3369828 | 17..228 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:53 Download gff for
BO11471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3369619..3369828 | 17..228 | 99 | | Plus |
BO11471.pep Sequence
Translation from 16 to 244
> BO11471.pep
MMQIKYLFALFAVLMLVVLGANEADADCLSGRYKGPCAVWDNETCRRVCK
EEGRSSGHCSPSLKCWCEGCASFLDH
BO11471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drs-PA | 70 | CG10810-PA | 1..70 | 1..70 | 394 | 100 | Plus |
Drsl5-PA | 69 | CG10812-PA | 1..69 | 2..70 | 338 | 82.6 | Plus |
Drsl2-PA | 70 | CG32279-PA | 1..70 | 1..70 | 328 | 78.6 | Plus |
Drsl6-PA | 72 | CG32268-PA | 1..72 | 1..70 | 324 | 77.8 | Plus |
Drsl1-PA | 69 | CG32274-PA | 1..69 | 2..70 | 278 | 66.7 | Plus |