Clone Sequence Records
BO11472.3prime Sequence
260 bp (259 high quality bases) assembled on 2006-04-19
> BO11472.3prime
ATGGTCTAGAAAGCTTGCGACTTGGCCTGAAGACTTCCACTCTTGGACAC
GTCTCTGCAGAGTCTGCAAGCGACTGCCCAGATCTTCGGATATTTTTGGG
TTGTTCTTGGCCAAGAAGTTCTGCTGCTGCATGCTGGCCACGTTCAAAGG
ACCTAGTATCCTTCCAGTCGTTGGTCGCTCTATCTTGATGACTCGAGGCT
GTTGCTCTGACACAGGCATCTTGCGCCGATTTGGAATCTTAAGCATGTCG
ACTGATAACT
BO11472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8750-PA | 231 | CG8750-RA | 1..228 | 246..19 | 1140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8750-RB | 641 | CG8750-RB | 128..355 | 246..19 | 1140 | 100 | Minus |
CG8750-RA | 452 | CG8750-RA | 128..355 | 246..19 | 1140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13842663..13842890 | 19..246 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 18:34:15 has no hits.
BO11472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:36 Download gff for
BO11472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-PA | 1..231 | 16..246 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:31:45 Download gff for
BO11472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-PA | 1..231 | 16..246 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:40:40 Download gff for
BO11472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-RA | 128..355 | 19..246 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:45:04 Download gff for
BO11472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-RA | 128..355 | 19..246 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:45:04 Download gff for
BO11472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13842663..13842890 | 19..246 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:40:40 Download gff for
BO11472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13835763..13835990 | 19..246 | 100 | | Plus |
BO11472.5prime Sequence
260 bp (259 high quality bases) assembled on 2006-04-19
> BO11472.5prime
GAAGTTATCAGTCGACATGCTTAAGATTCCAAATCGGCGCAAGATGCCTG
TGTCAGAGCAACAGCCTCGAGTCATCAAGATAGAGCGACCAACGACTGGA
AGGATACTAGGTCCTTTGAACGTGGCCAGCATGCAGCAGCAGAACTTCTT
GGCCAAGAACAACCCAAAAATATCCGAAGATCTGGGCAGTCGCTTGCAGA
CTCTGCAGAGACGTGTCCAAGAGTGGAAGTCTTCAGGCCAAGTCGCAAGC
TTTCTAGACC
BO11472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8750-PA | 231 | CG8750-RA | 1..228 | 17..244 | 1140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8750-RB | 641 | CG8750-RB | 128..355 | 17..244 | 1140 | 100 | Plus |
CG8750-RA | 452 | CG8750-RA | 128..355 | 17..244 | 1140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13842663..13842890 | 244..17 | 1140 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:20:24 has no hits.
BO11472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:37 Download gff for
BO11472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-PA | 1..231 | 17..247 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:31:47 Download gff for
BO11472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-PA | 1..231 | 17..247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:04:43 Download gff for
BO11472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-RA | 128..355 | 17..244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:07 Download gff for
BO11472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-RA | 128..355 | 17..244 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:07 Download gff for
BO11472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13842663..13842890 | 17..244 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:04:43 Download gff for
BO11472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13835763..13835990 | 17..244 | 100 | | Minus |
BO11472.complete Sequence
262 bp assembled on 2006-10-10
GenBank Submission: FJ632094
> BO11472.complete
GAAGTTATCAGTCGACATGCTTAAGATTCCAAATCGGCGCAAGATGCCTG
TGTCAGAGCAACAGCCTCGAGTCATCAAGATAGAGCGACCAACGACTGGA
AGGATACTAGGTCCTTTGAACGTGGCCAGCATGCAGCAGCAGAACTTCTT
GGCCAAGAACAACCCAAAAATATCCGAAGATCTGGGCAGTCGCTTGCAGA
CTCTGCAGAGACGTGTCCAAGAGTGGAAGTCTTCAGGCCAAGTCGCAAGC
TTTCTAGACCAT
BO11472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8750-RB | 231 | CG8750-PB | 1..228 | 17..244 | 1140 | 100 | Plus |
CG8750-RA | 231 | CG8750-PA | 1..228 | 17..244 | 1140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8750-RB | 641 | CG8750-RB | 128..355 | 17..244 | 1140 | 100 | Plus |
CG8750-RA | 452 | CG8750-RA | 128..355 | 17..244 | 1140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13842663..13842890 | 244..17 | 1140 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:30:14 has no hits.
BO11472.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:11 Download gff for
BO11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-RA | 1..231 | 17..247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:53 Download gff for
BO11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-RA | 128..355 | 17..244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:11 Download gff for
BO11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-RA | 128..355 | 17..246 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:12 Download gff for
BO11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-RA | 128..355 | 17..244 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:55 Download gff for
BO11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8750-RA | 128..355 | 17..246 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:55 Download gff for
BO11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13842660..13842890 | 17..246 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:11 Download gff for
BO11472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13835760..13835990 | 17..246 | 99 | | Minus |
BO11472.pep Sequence
Translation from 16 to 262
> BO11472.pep
MLKIPNRRKMPVSEQQPRVIKIERPTTGRILGPLNVASMQQQNFLAKNNP
KISEDLGSRLQTLQRRVQEWKSSGQVASFLDH
BO11472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8750-PB | 76 | CG8750-PB | 1..76 | 1..76 | 384 | 100 | Plus |
CG8750-PA | 76 | CG8750-PA | 1..76 | 1..76 | 384 | 100 | Plus |