Clone Sequence Records
BO11474.3prime Sequence
152 bp (151 high quality bases) assembled on 2006-04-19
> BO11474.3prime
ATGGTCTAGAAAGCTTGCCTCGGAGCAGCCGCAGGCGGATTTCTTGTCGC
CGCCGCACTTGCAGTCAGATCCGCAGTTGCAGGATCCCTTGGTGGCCTGG
CTGGCGCATTTGCATCCGCTTCCGCATGGGCAAGGCATGTCGACTGATAA
CT
BO11474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9470-PA | 123 | MtnA-RA | 1..120 | 138..19 | 600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MtnA-RB | 700 | CG9470-RB | 126..245 | 138..19 | 600 | 100 | Minus |
MtnA-RA | 329 | CG9470-RA | 126..245 | 138..19 | 600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9783862..9783960 | 19..117 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:32:15 has no hits.
BO11474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:38 Download gff for
BO11474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-PA | 1..123 | 16..138 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:31:48 Download gff for
BO11474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9470-PA | 1..123 | 16..138 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:11:31 Download gff for
BO11474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 117..254 | 9..147 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:02 Download gff for
BO11474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 117..254 | 9..147 | 95 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:02 Download gff for
BO11474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9783853..9783959 | 9..116 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:11:31 Download gff for
BO11474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5609575..5609681 | 9..116 | 97 | <- | Plus |
BO11474.5prime Sequence
152 bp (151 high quality bases) assembled on 2006-04-19
> BO11474.5prime
GAAGTTATCAGTCGACATGCCTTGCCCATGCGGAAGCGGATGCAAATGCG
CCAGCCAGGCCACCAAGGGATCCTGCAACTGCGGATCTGACTGCAAGTGC
GGCGGCGACAAGAAATCCGCCTGCGGCTGCTCCGAGGCAAGCTTTCTAGA
CC
BO11474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9470-PA | 123 | MtnA-RA | 1..120 | 17..136 | 600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MtnA-RB | 700 | CG9470-RB | 126..245 | 17..136 | 600 | 100 | Plus |
MtnA-RA | 329 | CG9470-RA | 126..245 | 17..136 | 600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9783862..9783960 | 136..38 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:16:47 has no hits.
BO11474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:39 Download gff for
BO11474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-PA | 1..123 | 17..139 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:31:50 Download gff for
BO11474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9470-PA | 1..123 | 17..139 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:25:37 Download gff for
BO11474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 117..254 | 8..146 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:43:23 Download gff for
BO11474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 117..254 | 8..146 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 16:43:23 Download gff for
BO11474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9783853..9783959 | 39..146 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:25:37 Download gff for
BO11474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5609575..5609681 | 39..146 | 97 | <- | Minus |
BO11474.complete Sequence
154 bp assembled on 2007-12-19
GenBank Submission: FJ632095
> BO11474.complete
GAAGTTATCAGTCGACATGCCTTGCCCATGCGGAAGCGGATGCAAATGCG
CCAGCCAGGCCACCAAGGGATCCTGCAACTGCGGATCTGACTGCAAGTGC
GGCGGCGACAAGAAATCCGCCTGCGGCTGCTCCGAGGCAAGCTTTCTAGA
CCAT
BO11474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MtnA-RB | 123 | CG9470-PB | 1..120 | 17..136 | 600 | 100 | Plus |
MtnA-RA | 123 | CG9470-PA | 1..120 | 17..136 | 600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MtnA-RB | 700 | CG9470-RB | 126..245 | 17..136 | 600 | 100 | Plus |
MtnA-RA | 329 | CG9470-RA | 126..245 | 17..136 | 600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9783862..9783960 | 136..38 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:08:48 has no hits.
BO11474.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:36 Download gff for
BO11474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 1..123 | 17..139 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:04 Download gff for
BO11474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 127..246 | 17..138 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:16 Download gff for
BO11474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 126..245 | 17..138 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:36 Download gff for
BO11474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 118..255 | 8..146 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:50 Download gff for
BO11474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MtnA-RA | 126..245 | 17..138 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:50 Download gff for
BO11474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9783859..9783959 | 39..138 | 98 | <- | Minus |
3R | 9784224..9784245 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:16 Download gff for
BO11474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5609581..5609681 | 39..138 | 98 | <- | Minus |
arm_3R | 5609946..5609967 | 17..38 | 100 | | Minus |
BO11474.pep Sequence
Translation from 16 to 154
> BO11474.pep
MPCPCGSGCKCASQATKGSCNCGSDCKCGGDKKSACGCSEASFLDH
BO11474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MtnA-PB | 40 | CG9470-PB | 1..40 | 1..40 | 245 | 100 | Plus |
MtnA-PA | 40 | CG9470-PA | 1..40 | 1..40 | 245 | 100 | Plus |