Clone Sequence Records
BO11475.3prime Sequence
227 bp (226 high quality bases) assembled on 2006-04-19
> BO11475.3prime
ATGGTCTAGAAAGCTTGCACATTTATAAAATTCGTTTATTGGGACATGTT
GGGTATCTACGAGTGTTTCAGGTACAATATGGTTGAACGTGTTTCGGCAC
CTGGCACATCCCCACTTCAGCAACAGCCTCTTGGTCCGCAGGGCATAAAT
GAGCACTGGATGTAGGCTGGGGTGCAGGGTACACAGCAGAGTTCCACGCA
GCAGTTGTAGCATGTCGACTGATAACT
BO11475.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17567-PA | 198 | CG17567-RA | 1..195 | 213..19 | 975 | 100 | Minus |
CG17567-PB | 198 | CG17567-RB | 1..195 | 213..19 | 975 | 100 | Minus |
CG17567-PC | 198 | CG17567-RC | 1..195 | 213..19 | 975 | 100 | Minus |
CG17567-PD | 198 | CG17567-RD | 1..195 | 213..19 | 975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46059-RC | 596 | CG46059-RC | 401..595 | 213..19 | 975 | 100 | Minus |
CG46059-RB | 409 | CG46059-RB | 214..408 | 213..19 | 975 | 100 | Minus |
CG46059-RA | 405 | CG46059-RA | 210..404 | 213..19 | 975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19183094..19183288 | 19..213 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:42:23 has no hits.
BO11475.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:41 Download gff for
BO11475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-PB | 1..198 | 15..213 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:31:52 Download gff for
BO11475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-PD | 1..198 | 15..213 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:56 Download gff for
BO11475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46059-RA | 207..405 | 18..217 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:56 Download gff for
BO11475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19183085..19183291 | 11..217 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:33 Download gff for
BO11475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19183085..19183291 | 11..217 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:33 Download gff for
BO11475.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19183085..19183291 | 11..217 | 97 | | Plus |
BO11475.5prime Sequence
227 bp (226 high quality bases) assembled on 2006-04-19
> BO11475.5prime
GAAGTTATCAGTCGACATGCTACAACTGCTGCGTGGAACTCTGCTGTGTA
CCCTGCACCCCAGCCTACATCCAGTGCTCATTTATGCCCTGCGGACCAAG
AGGCTGTTGCTGAAGTGGGGATGTGCCAGGTGCCGAAACACGTTCAACCA
TATTGTACCTGAAACACTCGTAGATACCCAACATGTCCCAATAAACGAAT
TTTATAAATGTGCAAGCTTTCTAGACC
BO11475.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17567-PA | 198 | CG17567-RA | 1..195 | 17..211 | 975 | 100 | Plus |
CG17567-PB | 198 | CG17567-RB | 1..195 | 17..211 | 975 | 100 | Plus |
CG17567-PC | 198 | CG17567-RC | 1..195 | 17..211 | 975 | 100 | Plus |
CG17567-PD | 198 | CG17567-RD | 1..195 | 17..211 | 975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46059-RC | 596 | CG46059-RC | 401..595 | 17..211 | 975 | 100 | Plus |
CG46059-RB | 409 | CG46059-RB | 214..408 | 17..211 | 975 | 100 | Plus |
CG46059-RA | 405 | CG46059-RA | 210..404 | 17..211 | 975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19183094..19183288 | 211..17 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:48:47 has no hits.
BO11475.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:42 Download gff for
BO11475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-PB | 1..198 | 17..215 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:31:53 Download gff for
BO11475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-PD | 1..198 | 17..215 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:18 Download gff for
BO11475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46059-RA | 207..405 | 13..212 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:18 Download gff for
BO11475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19183085..19183291 | 13..219 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:01:14 Download gff for
BO11475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19183085..19183291 | 13..219 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:01:14 Download gff for
BO11475.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19183085..19183291 | 13..219 | 97 | | Minus |
BO11475.complete Sequence
229 bp assembled on 2006-10-10
GenBank Submission: FJ632096
> BO11475.complete
GAAGTTATCAGTCGACATGCTACAACTGCTGCGTGGAACTCTGCTGTGTA
CCCTGCACCCCAGCCTACATCCAGTGCTCATTTATGCCCTGCGGACCAAG
AGGCTGTTGCTGAAGTGGGGATGTGCCAGGTGCCGAAACACGTTCAACCA
TATTGTACCTGAAACACTCGTAGATACCCAACATGTCCCAATAAACGAAT
TTTATAAATGTGCAAGCTTTCTAGACCAT
BO11475.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46059-RC | 144 | CG46059-PC | 48..144 | 17..113 | 485 | 100 | Plus |
CG46059-RB | 144 | CG46059-PB | 48..144 | 17..113 | 485 | 100 | Plus |
CG46059-RA | 144 | CG46059-PA | 48..144 | 17..113 | 485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46059-RC | 596 | CG46059-RC | 401..595 | 17..211 | 975 | 100 | Plus |
CG46059-RB | 409 | CG46059-RB | 214..408 | 17..211 | 975 | 100 | Plus |
CG46059-RA | 405 | CG46059-RA | 210..404 | 17..211 | 975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19183094..19183288 | 211..17 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:53:07 has no hits.
BO11475.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:30 Download gff for
BO11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-RC | 1..198 | 17..215 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:06 Download gff for
BO11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-RA | 220..420 | 13..215 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:30 Download gff for
BO11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17567-RA | 220..420 | 13..215 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:18 Download gff for
BO11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46059-RA | 210..405 | 17..212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:18 Download gff for
BO11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19183092..19183288 | 17..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:13 Download gff for
BO11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19183092..19183288 | 17..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:13 Download gff for
BO11475.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19183092..19183288 | 17..213 | 98 | | Minus |
BO11475.pep Sequence
Translation from 16 to 229
> BO11475.pep
MLQLLRGTLLCTLHPSLHPVLIYALRTKRLLLKWGCARCRNTFNHIVPET
LVDTQHVPINEFYKCASFLDH
Sequence BO11475.pep has no blast hits.