Clone Sequence Records
BO11482.3prime Sequence
338 bp (337 high quality bases) assembled on 2006-04-19
> BO11482.3prime
ATGGTCTAGAAAGCTTGCTTCCGCGGACTTGGCGGTACTGGCCGCCGCAG
CCGCCTTCGCCTGGGAGGCGTGGTGCTTGGCCACCGCCTCCTGGGCCTTG
CTCAACTGGATGTAGCCCTCGTGGGCGCGGGAGCGCAGTTCGCTCTCCAC
GCTCTTGTTGACCGACTTCGAAATGACGGACTTGATCTTCTGCGTCTCAT
TGAACTTGGCCTTTTTCGCCTGAATGGGCGCATTTGATCGACGGGTGAAA
GCAGCTTGCTTTTGGTTCTTCTTTTTCTGTATCGCTGCTGGTAGCTTGGC
CTTCTTGAATTTTCCCTGTGGCATGTCGACTGATAACT
BO11482.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-PA | 309 | CG11279-RA | 1..306 | 324..19 | 1480 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-RC | 1880 | CG11279-RC | 105..410 | 324..19 | 1500 | 99.3 | Minus |
CG11279-RB | 927 | CG11279-RB | 105..410 | 324..19 | 1500 | 99.3 | Minus |
CG11279-RA | 452 | CG11279-RA | 71..376 | 324..19 | 1500 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13047235..13047449 | 233..19 | 1045 | 99.1 | Minus |
3L | 28110227 | 3L | 13047081..13047171 | 324..234 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:37:28 has no hits.
BO11482.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:53 Download gff for
BO11482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-PA | 1..309 | 18..324 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:07 Download gff for
BO11482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-PA | 1..309 | 18..324 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:27:32 Download gff for
BO11482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 65..385 | 8..330 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:18 Download gff for
BO11482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 65..385 | 8..330 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:18 Download gff for
BO11482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13047075..13047171 | 234..330 | 96 | -> | Minus |
3L | 13047235..13047458 | 8..233 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:27:32 Download gff for
BO11482.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13040175..13040271 | 234..330 | 96 | -> | Minus |
arm_3L | 13040335..13040558 | 8..233 | 97 | | Minus |
BO11482.5prime Sequence
338 bp (337 high quality bases) assembled on 2006-04-19
> BO11482.5prime
GAAGTTATCAGTCGACATGCCACAGGGAAAATTCAAGAAGGCCAAGCTAC
CAGCAGCGATACAGAAAAAGAAGAACCAAAAGCAAGCTGCTTTCACCCGT
CGATCAAATGCGCCCATTCAGGCGAAAAAGGCCAAGTTCAATGAGACGCA
GAAGATCAAGTCCGTCATTTCGAAGTCGGTCAACAAGAGCGTGGAGAGCG
AACTGCGCTCCCGCGCCCACGAGGGCTACATCCAGTTGAGCAAGGCCCAG
GAGGCGGTGGCCAAGCACCACGCCTCCCAGGCGAAGGCGGCTGCGGCGGC
CAGTACCGCCAAGTCCGCGGAAGCAAGCTTTCTAGACC
BO11482.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-PA | 309 | CG11279-RA | 1..306 | 17..322 | 1480 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-RC | 1880 | CG11279-RC | 105..410 | 17..322 | 1500 | 99.3 | Plus |
CG11279-RB | 927 | CG11279-RB | 105..410 | 17..322 | 1500 | 99.3 | Plus |
CG11279-RA | 452 | CG11279-RA | 71..376 | 17..322 | 1500 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13047235..13047449 | 108..322 | 1045 | 99.1 | Plus |
3L | 28110227 | 3L | 13047081..13047171 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:08:21 has no hits.
BO11482.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:54 Download gff for
BO11482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-PA | 1..309 | 17..323 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:09 Download gff for
BO11482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-PA | 1..309 | 17..323 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:24:45 Download gff for
BO11482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 65..385 | 11..333 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:37:01 Download gff for
BO11482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 65..385 | 11..333 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:37:01 Download gff for
BO11482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13047075..13047171 | 11..107 | 96 | -> | Plus |
3L | 13047235..13047458 | 108..333 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:24:45 Download gff for
BO11482.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13040175..13040271 | 11..107 | 96 | -> | Plus |
arm_3L | 13040335..13040558 | 108..333 | 97 | | Plus |
BO11482.complete Sequence
340 bp assembled on 2006-10-10
GenBank Submission: FJ632097
> BO11482.complete
GAAGTTATCAGTCGACATGCCACAGGGAAAATTCAAGAAGGCCAAGCTAC
CAGCAGCGATACAGAAAAAGAAGAACCAAAAGCAAGCTGCTTTCACCCGT
CGATCAAATGCGCCCATTCAGGCGAAAAAGGCCAAGTTCAATGAGACGCA
GAAGATCAAGTCCGTCATTTCGAAGTCGGTCAACAAGAGCGTGGAGAGCG
AACTGCGCTCCCGCGCCCACGAGGGCTACATCCAGTTGAGCAAGGCCCAG
GAGGCGGTGGCCAAGCACCACGCCTCCCAGGCGAAGGCGGCTGCGGCGGC
CAGTACCGCCAAGTCCGCGGAAGCAAGCTTTCTAGACCAT
BO11482.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-RC | 309 | CG11279-PC | 1..306 | 17..322 | 1500 | 99.3 | Plus |
CG11279-RB | 309 | CG11279-PB | 1..306 | 17..322 | 1500 | 99.3 | Plus |
CG11279-RA | 309 | CG11279-PA | 1..306 | 17..322 | 1500 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-RC | 1880 | CG11279-RC | 105..410 | 17..322 | 1500 | 99.3 | Plus |
CG11279-RB | 927 | CG11279-RB | 105..410 | 17..322 | 1500 | 99.3 | Plus |
CG11279-RA | 452 | CG11279-RA | 71..376 | 17..322 | 1500 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13047235..13047449 | 108..322 | 1045 | 99.1 | Plus |
3L | 28110227 | 3L | 13047081..13047171 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:34:24 has no hits.
BO11482.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:25 Download gff for
BO11482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 1..309 | 17..323 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:45 Download gff for
BO11482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 52..372 | 11..333 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:20 Download gff for
BO11482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 71..376 | 17..324 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:26 Download gff for
BO11482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 52..372 | 11..333 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:20 Download gff for
BO11482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11279-RA | 71..376 | 17..324 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:20 Download gff for
BO11482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13047081..13047171 | 17..107 | 100 | -> | Plus |
3L | 13047235..13047449 | 108..324 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:20 Download gff for
BO11482.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13040181..13040271 | 17..107 | 100 | -> | Plus |
arm_3L | 13040335..13040549 | 108..324 | 98 | | Plus |
BO11482.pep Sequence
Translation from 16 to 340
> BO11482.pep
MPQGKFKKAKLPAAIQKKKNQKQAAFTRRSNAPIQAKKAKFNETQKIKSV
ISKSVNKSVESELRSRAHEGYIQLSKAQEAVAKHHASQAKAAAAASTAKS
AEASFLDH
BO11482.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11279-PC | 102 | CG11279-PC | 1..102 | 1..102 | 492 | 100 | Plus |
CG11279-PB | 102 | CG11279-PB | 1..102 | 1..102 | 492 | 100 | Plus |
CG11279-PA | 102 | CG11279-PA | 1..102 | 1..102 | 492 | 100 | Plus |