Clone Sequence Records
BO11483.3prime Sequence
234 bp (233 high quality bases) assembled on 2006-04-19
> BO11483.3prime
ATGGTCTAGAAAGCTTGCGGAAGCCACATGGATAAGTTGGGGGCGTGTTG
TAGTAGTTCCAGACACGGGGATCGGGAATGCCGCCCTCGGGCAGAGGGGG
ACAGCACATGCCCGGAGCAGGAGAGCACGGGATGGGAGACGGGGCTCCGC
ATGGCGGACTGTGGGGGCCACAGCAGGGTGTTTCATTACAGGGTCCACAG
CATCCACATCCGTTGCACATGTCGACTGATAACT
BO11483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17376-PB | 204 | CG17376-RB | 1..201 | 220..20 | 1005 | 100 | Minus |
CG17377-PC | 864 | CG17377-RC | 388..512 | 175..51 | 275 | 88.8 | Minus |
CG17376-PA | 138 | CG17376-RA | 1..31 | 220..190 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17376-RB | 518 | CG17376-RB | 158..360 | 222..20 | 1015 | 100 | Minus |
CG17376-RC | 784 | CG17376-RC | 98..294 | 222..26 | 985 | 100 | Minus |
CG17377-RD | 907 | CG17377-RD | 487..641 | 175..21 | 430 | 85.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6800487..6800683 | 26..222 | 985 | 100 | Plus |
2L | 23513712 | 2L | 6802059..6802187 | 47..175 | 420 | 88.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:40:49 has no hits.
BO11483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:55 Download gff for
BO11483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17376-PB | 1..204 | 15..220 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:10 Download gff for
BO11483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17376-PB | 1..204 | 15..220 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:49:27 Download gff for
BO11483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17376-RB | 95..305 | 13..225 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:38 Download gff for
BO11483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17376-RB | 155..365 | 13..225 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:38 Download gff for
BO11483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6800479..6800686 | 17..225 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:49:27 Download gff for
BO11483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6800479..6800686 | 17..225 | 97 | | Plus |
BO11483.5prime Sequence
234 bp (233 high quality bases) assembled on 2006-04-19
> BO11483.5prime
GAAGTTATCAGTCGACATGTGCAACGGATGTGGATGCTGTGGACCCTGTA
ATGAAACACCCTGCTGTGGCCCCCACAGTCCGCCATGCGGAGCCCCGTCT
CCCATCCCGTGCTCTCCTGCTCCGGGCATGTGCTGTCCCCCTCTGCCCGA
GGGCGGCATTCCCGATCCCCGTGTCTGGAACTACTACAACACGCCCCCAA
CTTATCCATGTGGCTTCCGCAAGCTTTCTAGACC
BO11483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17376-PB | 204 | CG17376-RB | 1..201 | 17..217 | 1005 | 100 | Plus |
CG17377-PC | 864 | CG17377-RC | 388..512 | 62..186 | 275 | 88.8 | Plus |
CG17376-PA | 138 | CG17376-RA | 1..31 | 17..47 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17376-RB | 518 | CG17376-RB | 158..360 | 15..217 | 1015 | 100 | Plus |
CG17376-RC | 784 | CG17376-RC | 98..294 | 15..211 | 985 | 100 | Plus |
CG17377-RD | 907 | CG17377-RD | 487..641 | 62..216 | 430 | 85.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6800487..6800683 | 211..15 | 985 | 100 | Minus |
2L | 23513712 | 2L | 6802059..6802187 | 190..62 | 420 | 88.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:39:21 has no hits.
BO11483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:07:56 Download gff for
BO11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17376-PB | 1..204 | 17..222 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:11 Download gff for
BO11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17376-PB | 1..204 | 17..222 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:12:07 Download gff for
BO11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17376-RB | 95..305 | 12..224 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:24 Download gff for
BO11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17376-RB | 155..365 | 12..224 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:24 Download gff for
BO11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6800479..6800686 | 12..220 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:12:07 Download gff for
BO11483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6800479..6800686 | 12..220 | 97 | | Minus |
BO11483.complete Sequence
236 bp assembled on 2011-06-28
> BO11483.complete
GAAGTTATCAGTCGACATGTGCAACGGATGTGGATGCTGTGGACCCTGTA
ATGAAACACCCTGCTGTGGCCCCCACAGTCCGCCATGCGGAGCCCCGTCT
CCCATCCCGTGCTCTCCTGCTCCGGGCATGTGCTGTCCCCCTCTGCCCGA
GGGCGGCATTCCCGATCCCCGTGTCTGGAACTACTACAACACGCCCCCAA
CTTATCCATGTGGCTTCCGCAAGCTTTCTAGACCAT
BO11483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17376-RB | 204 | CG17376-PB | 1..201 | 17..217 | 1005 | 100 | Plus |
CG17376-RC | 276 | CG17376-PC | 1..195 | 17..211 | 975 | 100 | Plus |
CG17377-RD | 546 | CG17377-PD | 388..542 | 62..216 | 430 | 85.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17376-RB | 518 | CG17376-RB | 158..360 | 15..217 | 1015 | 100 | Plus |
CG17376-RC | 784 | CG17376-RC | 98..294 | 15..211 | 985 | 100 | Plus |
CG17377-RD | 907 | CG17377-RD | 487..641 | 62..216 | 430 | 85.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6800487..6800683 | 211..15 | 985 | 100 | Minus |
2L | 23513712 | 2L | 6802059..6802187 | 190..62 | 420 | 88.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:19:29 has no hits.
BO11483.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:33 Download gff for
BO11483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17376-RB | 100..300 | 17..220 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:59 Download gff for
BO11483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17376-RB | 100..300 | 17..220 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:25 Download gff for
BO11483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17376-RB | 160..360 | 17..220 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:25 Download gff for
BO11483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6800479..6800681 | 17..220 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:59 Download gff for
BO11483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6800479..6800681 | 17..220 | 98 | | Minus |
BO11483.pep Sequence
Translation from 16 to 235
> BO11483.pep
MCNGCGCCGPCNETPCCGPHSPPCGAPSPIPCSPAPGMCCPPLPEGGIPD
PRVWNYYNTPPTYPCGFRKLSRP
BO11483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17376-PB | 67 | CG17376-PB | 1..67 | 1..67 | 440 | 100 | Plus |
CG17376-PC | 91 | CG17376-PC | 1..65 | 1..65 | 428 | 100 | Plus |
CG17377-PD | 181 | CG17377-PD | 109..180 | 2..66 | 336 | 76.4 | Plus |
CG17377-PE | 207 | CG17377-PE | 109..179 | 2..65 | 330 | 76.1 | Plus |