Clone BO11487 Report

Search the DGRC for BO11487

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:114
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG3348-RA
Protein status:BO11487.pep: validated full length
Sequenced Size:328

Clone Sequence Records

BO11487.3prime Sequence

326 bp (325 high quality bases) assembled on 2006-04-19

> BO11487.3prime
ATGGTCTAGAAAGCTTGCATTTGTGGACACCGATTGACTGATCTTGGCTC
GGCCAGCCGGCTCCTTGGGATCCGTCCAGGCCCAATCGGCATAGTGGACG
CAACGGCCGAGTTCCTCGGAGTAGAGCTGCGACTGCGGACAGCGCTGGAG
ACGAGCCCGTGTGCCCTGCTTATCGCACACCCAGTAGGCCGTGGGATCCC
AGTAATTCCGGAACATGCGGTTCACCTCATCTAGACCCTGGCAGCTGGGC
TCGCCATTGTGCTCATGCGGCCGGCGCTTCTGAATGGGCAGATGTGCTGA
TGCGGTAGGCATGTCGACTGATAACT

BO11487.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-PA 297 CG3348-RA 1..294 312..19 1470 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-RA 543 CG3348-RA 122..415 312..19 1470 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27291663..27291956 19..312 1470 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:52:54 has no hits.

BO11487.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:02 Download gff for BO11487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-PA 1..297 18..312 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:18 Download gff for BO11487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-PA 1..297 18..312 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:53:40 Download gff for BO11487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 122..415 19..312 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:06 Download gff for BO11487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 122..415 19..312 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:06 Download gff for BO11487.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27291663..27291956 19..312 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:53:40 Download gff for BO11487.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23117385..23117678 19..312 100   Plus

BO11487.5prime Sequence

326 bp (325 high quality bases) assembled on 2006-04-19

> BO11487.5prime
GAAGTTATCAGTCGACATGCCTACCGCATCAGCACATCTGCCCATTCAGA
AGCGCCGGCCGCATGAGCACAATGGCGAGCCCAGCTGCCAGGGTCTAGAT
GAGGTGAACCGCATGTTCCGGAATTACTGGGATCCCACGGCCTACTGGGT
GTGCGATAAGCAGGGCACACGGGCTCGTCTCCAGCGCTGTCCGCAGTCGC
AGCTCTACTCCGAGGAACTCGGCCGTTGCGTCCACTATGCCGATTGGGCC
TGGACGGATCCCAAGGAGCCGGCTGGCCGAGCCAAGATCAGTCAATCGGT
GTCCACAAATGCAAGCTTTCTAGACC

BO11487.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-PA 297 CG3348-RA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-RA 543 CG3348-RA 122..415 17..310 1470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27291663..27291956 310..17 1470 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:21:03 has no hits.

BO11487.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:03 Download gff for BO11487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-PA 1..297 17..311 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:19 Download gff for BO11487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-PA 1..297 17..311 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:38:39 Download gff for BO11487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 122..415 17..310 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:49 Download gff for BO11487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 122..415 17..310 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:49 Download gff for BO11487.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27291663..27291956 17..310 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:38:39 Download gff for BO11487.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23117385..23117678 17..310 100   Minus

BO11487.complete Sequence

328 bp assembled on 2006-10-10

GenBank Submission: FJ632099

> BO11487.complete
GAAGTTATCAGTCGACATGCCTACCGCATCAGCACATCTGCCCATTCAGA
AGCGCCGGCCGCATGAGCACAATGGCGAGCCCAGCTGCCAGGGTCTAGAT
GAGGTGAACCGCATGTTCCGGAATTACTGGGATCCCACGGCCTACTGGGT
GTGCGATAAGCAGGGCACACGGGCTCGTCTCCAGCGCTGTCCGCAGTCGC
AGCTCTACTCCGAGGAACTCGGCCGTTGCGTCCACTATGCCGATTGGGCC
TGGACGGATCCCAAGGAGCCGGCTGGCCGAGCCAAGATCAGTCAATCGGT
GTCCACAAATGCAAGCTTTCTAGACCAT

BO11487.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-RA 297 CG3348-PA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-RA 543 CG3348-RA 122..415 17..310 1470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27291663..27291956 310..17 1470 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:51:27 has no hits.

BO11487.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:30 Download gff for BO11487.complete
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 1..297 17..311 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:14 Download gff for BO11487.complete
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 102..395 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:13 Download gff for BO11487.complete
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 122..415 17..312 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:30 Download gff for BO11487.complete
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 102..395 17..310 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:12 Download gff for BO11487.complete
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 122..415 17..312 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:12 Download gff for BO11487.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27291661..27291956 17..312 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:13 Download gff for BO11487.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23117383..23117678 17..312 99   Minus

BO11487.pep Sequence

Translation from 16 to 328

> BO11487.pep
MPTASAHLPIQKRRPHEHNGEPSCQGLDEVNRMFRNYWDPTAYWVCDKQG
TRARLQRCPQSQLYSEELGRCVHYADWAWTDPKEPAGRAKISQSVSTNAS
FLDH

BO11487.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-PA 98 CG3348-PA 1..98 1..98 555 100 Plus
CG14246-PC 93 CG14246-PC 5..87 17..85 190 38.6 Plus
CG14246-PB 93 CG14246-PB 5..87 17..85 190 38.6 Plus
CG14246-PA 93 CG14246-PA 5..87 17..85 190 38.6 Plus
CG14645-PA 97 CG14645-PA 21..95 16..89 143 33.3 Plus