Clone Sequence Records
BO11487.3prime Sequence
326 bp (325 high quality bases) assembled on 2006-04-19
> BO11487.3prime
ATGGTCTAGAAAGCTTGCATTTGTGGACACCGATTGACTGATCTTGGCTC
GGCCAGCCGGCTCCTTGGGATCCGTCCAGGCCCAATCGGCATAGTGGACG
CAACGGCCGAGTTCCTCGGAGTAGAGCTGCGACTGCGGACAGCGCTGGAG
ACGAGCCCGTGTGCCCTGCTTATCGCACACCCAGTAGGCCGTGGGATCCC
AGTAATTCCGGAACATGCGGTTCACCTCATCTAGACCCTGGCAGCTGGGC
TCGCCATTGTGCTCATGCGGCCGGCGCTTCTGAATGGGCAGATGTGCTGA
TGCGGTAGGCATGTCGACTGATAACT
BO11487.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-PA | 297 | CG3348-RA | 1..294 | 312..19 | 1470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-RA | 543 | CG3348-RA | 122..415 | 312..19 | 1470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27291663..27291956 | 19..312 | 1470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:52:54 has no hits.
BO11487.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:02 Download gff for
BO11487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-PA | 1..297 | 18..312 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:18 Download gff for
BO11487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-PA | 1..297 | 18..312 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:53:40 Download gff for
BO11487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 122..415 | 19..312 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:11:06 Download gff for
BO11487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 122..415 | 19..312 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:11:06 Download gff for
BO11487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27291663..27291956 | 19..312 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:53:40 Download gff for
BO11487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23117385..23117678 | 19..312 | 100 | | Plus |
BO11487.5prime Sequence
326 bp (325 high quality bases) assembled on 2006-04-19
> BO11487.5prime
GAAGTTATCAGTCGACATGCCTACCGCATCAGCACATCTGCCCATTCAGA
AGCGCCGGCCGCATGAGCACAATGGCGAGCCCAGCTGCCAGGGTCTAGAT
GAGGTGAACCGCATGTTCCGGAATTACTGGGATCCCACGGCCTACTGGGT
GTGCGATAAGCAGGGCACACGGGCTCGTCTCCAGCGCTGTCCGCAGTCGC
AGCTCTACTCCGAGGAACTCGGCCGTTGCGTCCACTATGCCGATTGGGCC
TGGACGGATCCCAAGGAGCCGGCTGGCCGAGCCAAGATCAGTCAATCGGT
GTCCACAAATGCAAGCTTTCTAGACC
BO11487.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-PA | 297 | CG3348-RA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-RA | 543 | CG3348-RA | 122..415 | 17..310 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27291663..27291956 | 310..17 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:21:03 has no hits.
BO11487.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:03 Download gff for
BO11487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-PA | 1..297 | 17..311 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:19 Download gff for
BO11487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-PA | 1..297 | 17..311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:38:39 Download gff for
BO11487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 122..415 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:49 Download gff for
BO11487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 122..415 | 17..310 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:49 Download gff for
BO11487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27291663..27291956 | 17..310 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:38:39 Download gff for
BO11487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23117385..23117678 | 17..310 | 100 | | Minus |
BO11487.complete Sequence
328 bp assembled on 2006-10-10
GenBank Submission: FJ632099
> BO11487.complete
GAAGTTATCAGTCGACATGCCTACCGCATCAGCACATCTGCCCATTCAGA
AGCGCCGGCCGCATGAGCACAATGGCGAGCCCAGCTGCCAGGGTCTAGAT
GAGGTGAACCGCATGTTCCGGAATTACTGGGATCCCACGGCCTACTGGGT
GTGCGATAAGCAGGGCACACGGGCTCGTCTCCAGCGCTGTCCGCAGTCGC
AGCTCTACTCCGAGGAACTCGGCCGTTGCGTCCACTATGCCGATTGGGCC
TGGACGGATCCCAAGGAGCCGGCTGGCCGAGCCAAGATCAGTCAATCGGT
GTCCACAAATGCAAGCTTTCTAGACCAT
BO11487.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-RA | 297 | CG3348-PA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-RA | 543 | CG3348-RA | 122..415 | 17..310 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27291663..27291956 | 310..17 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:51:27 has no hits.
BO11487.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:30 Download gff for
BO11487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 1..297 | 17..311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:14 Download gff for
BO11487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 102..395 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:13 Download gff for
BO11487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 122..415 | 17..312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:30 Download gff for
BO11487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 102..395 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:12 Download gff for
BO11487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3348-RA | 122..415 | 17..312 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:12 Download gff for
BO11487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27291661..27291956 | 17..312 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:13 Download gff for
BO11487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23117383..23117678 | 17..312 | 99 | | Minus |
BO11487.pep Sequence
Translation from 16 to 328
> BO11487.pep
MPTASAHLPIQKRRPHEHNGEPSCQGLDEVNRMFRNYWDPTAYWVCDKQG
TRARLQRCPQSQLYSEELGRCVHYADWAWTDPKEPAGRAKISQSVSTNAS
FLDH
BO11487.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3348-PA | 98 | CG3348-PA | 1..98 | 1..98 | 555 | 100 | Plus |
CG14246-PC | 93 | CG14246-PC | 5..87 | 17..85 | 190 | 38.6 | Plus |
CG14246-PB | 93 | CG14246-PB | 5..87 | 17..85 | 190 | 38.6 | Plus |
CG14246-PA | 93 | CG14246-PA | 5..87 | 17..85 | 190 | 38.6 | Plus |
CG14645-PA | 97 | CG14645-PA | 21..95 | 16..89 | 143 | 33.3 | Plus |