Clone BO11492 Report

Search the DGRC for BO11492

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:114
Well:92
Vector:pDNR-Dual
Associated Gene/Transcriptbaf-RA
Protein status:BO11492.pep:
Sequenced Size:304

Clone Sequence Records

BO11492.3prime Sequence

302 bp (301 high quality bases) assembled on 2006-04-19

> BO11492.3prime
ATGGTCTAGAAAGCTTGCCAAGAACTCCTCGCACCAATCGTTGAGACAGT
TGTAGCAATCGGATGCCTGTTTGGAGCTGGCGTGGCACACCTCCTTCATC
CAGTCCTTGAACAGCTCCTCGTCCTTTTTCAGCACCAGATACTGTCCCAA
AACGGTGTAGGCCATATCGAATCCAGCGTCCTTCAAGCGTCCACCGAGGG
TTTCCCCAATTCCGGCCAGTTCCGTCACCGACTTGTTGCCCATTGGCTCC
GCAACGAAGTTCCTGTGTTTCTGCGATGTGCCCGACATGTCGACTGATAA
CT

BO11492.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7380-PA 273 CG7380-RA 1..270 288..19 1350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
baf-RB 1022 CG7380-RB 145..416 290..19 1360 100 Minus
baf-RA 607 CG7380-RA 145..416 290..19 1360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8029815..8029959 163..19 725 100 Minus
2L 23513712 2L 8029606..8029734 290..162 645 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:52:08 has no hits.

BO11492.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:11 Download gff for BO11492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7380-PA 1..273 15..288 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:32 Download gff for BO11492.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7380-PA 1..273 15..288 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:23:20 Download gff for BO11492.3prime
Subject Subject Range Query Range Percent Splice Strand
baf-RA 142..420 14..296 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:21 Download gff for BO11492.3prime
Subject Subject Range Query Range Percent Splice Strand
baf-RA 142..420 14..296 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:21 Download gff for BO11492.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8029603..8029733 163..296 97 -> Minus
2L 8029816..8029963 14..162 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:23:20 Download gff for BO11492.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8029603..8029733 163..296 97 -> Minus
arm_2L 8029816..8029963 14..162 98   Minus

BO11492.5prime Sequence

302 bp (301 high quality bases) assembled on 2006-04-19

> BO11492.5prime
GAAGTTATCAGTCGACATGTCGGGCACATCGCAGAAACACAGGAACTTCG
TTGCGGAGCCAATGGGCAACAAGTCGGTGACGGAACTGGCCGGAATTGGG
GAAACCCTCGGTGGACGCTTGAAGGACGCTGGATTCGATATGGCCTACAC
CGTTTTGGGACAGTATCTGGTGCTGAAAAAGGACGAGGAGCTGTTCAAGG
ACTGGATGAAGGAGGTGTGCCACGCCAGCTCCAAACAGGCATCCGATTGC
TACAACTGTCTCAACGATTGGTGCGAGGAGTTCTTGGCAAGCTTTCTAGA
CC

BO11492.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7380-PA 273 CG7380-RA 1..270 17..286 1350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
baf-RB 1022 CG7380-RB 145..416 15..286 1360 100 Plus
baf-RA 607 CG7380-RA 145..416 15..286 1360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8029815..8029959 142..286 725 100 Plus
2L 23513712 2L 8029606..8029734 15..143 645 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:40:17 has no hits.

BO11492.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:12 Download gff for BO11492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7380-PA 1..273 17..290 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:34 Download gff for BO11492.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7380-PA 1..273 17..290 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:45:20 Download gff for BO11492.5prime
Subject Subject Range Query Range Percent Splice Strand
baf-RA 142..420 9..291 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:23:17 Download gff for BO11492.5prime
Subject Subject Range Query Range Percent Splice Strand
baf-RA 142..420 9..291 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:23:17 Download gff for BO11492.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8029603..8029733 9..142 97 -> Plus
2L 8029816..8029963 143..291 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:45:20 Download gff for BO11492.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8029603..8029733 9..142 97 -> Plus
arm_2L 8029816..8029963 143..291 98   Plus

BO11492.complete Sequence

304 bp assembled on 2007-06-22

GenBank Submission: FJ632101

> BO11492.complete
GAAGTTATCAGTCGACATGTCGGGCACATCGCAGAAACACAGGAACTTCG
TTGCGGAGCCAATGGGCAACAAGTCGGTGACGGAACTGGCCGGAATTGGG
GAAACCCTCGGTGGACGCTTGAAGGACGCTGGATTCGATATGGCCTACAC
CGTTTTGGGACAGTATCTGGTGCTGAAAAAGGACGAGGAGCTGTTCAAGG
ACTGGATGAAGGAGGTGTGCCACGCCAGCTCCAAACAGGCATCCGATTGC
TACAACTGTCTCAACGATTGGTGCGAGGAGTTCTTGGCAAGCTTTCTAGA
CCAT

BO11492.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
baf-RB 273 CG7380-PB 1..270 17..286 1350 100 Plus
baf-RA 273 CG7380-PA 1..270 17..286 1350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
baf-RB 1022 CG7380-RB 145..416 15..286 1360 100 Plus
baf-RA 607 CG7380-RA 145..416 15..286 1360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8029815..8029959 142..286 725 100 Plus
2L 23513712 2L 8029606..8029734 15..143 645 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:34:33 has no hits.

BO11492.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:49 Download gff for BO11492.complete
Subject Subject Range Query Range Percent Splice Strand
baf-RA 1..273 17..290 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:39 Download gff for BO11492.complete
Subject Subject Range Query Range Percent Splice Strand
baf-RA 140..418 9..291 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:56 Download gff for BO11492.complete
Subject Subject Range Query Range Percent Splice Strand
baf-RA 147..416 17..288 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:49 Download gff for BO11492.complete
Subject Subject Range Query Range Percent Splice Strand
baf-RA 140..418 9..291 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:02 Download gff for BO11492.complete
Subject Subject Range Query Range Percent Splice Strand
baf-RA 147..416 17..288 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:02 Download gff for BO11492.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8029608..8029733 17..142 100 -> Plus
2L 8029816..8029959 143..288 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:56 Download gff for BO11492.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8029608..8029733 17..142 100 -> Plus
arm_2L 8029816..8029959 143..288 98   Plus

BO11492.pep Sequence

Translation from 16 to 304

> BO11492.pep
MSGTSQKHRNFVAEPMGNKSVTELAGIGETLGGRLKDAGFDMAYTVLGQY
LVLKKDEELFKDWMKEVCHASSKQASDCYNCLNDWCEEFLASFLDH

BO11492.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
baf-PB 90 CG7380-PB 1..90 1..90 487 100 Plus
baf-PA 90 CG7380-PA 1..90 1..90 487 100 Plus