Clone Sequence Records
BO11492.3prime Sequence
302 bp (301 high quality bases) assembled on 2006-04-19
> BO11492.3prime
ATGGTCTAGAAAGCTTGCCAAGAACTCCTCGCACCAATCGTTGAGACAGT
TGTAGCAATCGGATGCCTGTTTGGAGCTGGCGTGGCACACCTCCTTCATC
CAGTCCTTGAACAGCTCCTCGTCCTTTTTCAGCACCAGATACTGTCCCAA
AACGGTGTAGGCCATATCGAATCCAGCGTCCTTCAAGCGTCCACCGAGGG
TTTCCCCAATTCCGGCCAGTTCCGTCACCGACTTGTTGCCCATTGGCTCC
GCAACGAAGTTCCTGTGTTTCTGCGATGTGCCCGACATGTCGACTGATAA
CT
BO11492.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7380-PA | 273 | CG7380-RA | 1..270 | 288..19 | 1350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baf-RB | 1022 | CG7380-RB | 145..416 | 290..19 | 1360 | 100 | Minus |
baf-RA | 607 | CG7380-RA | 145..416 | 290..19 | 1360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8029815..8029959 | 163..19 | 725 | 100 | Minus |
2L | 23513712 | 2L | 8029606..8029734 | 290..162 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:52:08 has no hits.
BO11492.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:11 Download gff for
BO11492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7380-PA | 1..273 | 15..288 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:32 Download gff for
BO11492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7380-PA | 1..273 | 15..288 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:23:20 Download gff for
BO11492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 142..420 | 14..296 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:21 Download gff for
BO11492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 142..420 | 14..296 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:21 Download gff for
BO11492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8029603..8029733 | 163..296 | 97 | -> | Minus |
2L | 8029816..8029963 | 14..162 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:23:20 Download gff for
BO11492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8029603..8029733 | 163..296 | 97 | -> | Minus |
arm_2L | 8029816..8029963 | 14..162 | 98 | | Minus |
BO11492.5prime Sequence
302 bp (301 high quality bases) assembled on 2006-04-19
> BO11492.5prime
GAAGTTATCAGTCGACATGTCGGGCACATCGCAGAAACACAGGAACTTCG
TTGCGGAGCCAATGGGCAACAAGTCGGTGACGGAACTGGCCGGAATTGGG
GAAACCCTCGGTGGACGCTTGAAGGACGCTGGATTCGATATGGCCTACAC
CGTTTTGGGACAGTATCTGGTGCTGAAAAAGGACGAGGAGCTGTTCAAGG
ACTGGATGAAGGAGGTGTGCCACGCCAGCTCCAAACAGGCATCCGATTGC
TACAACTGTCTCAACGATTGGTGCGAGGAGTTCTTGGCAAGCTTTCTAGA
CC
BO11492.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7380-PA | 273 | CG7380-RA | 1..270 | 17..286 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baf-RB | 1022 | CG7380-RB | 145..416 | 15..286 | 1360 | 100 | Plus |
baf-RA | 607 | CG7380-RA | 145..416 | 15..286 | 1360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8029815..8029959 | 142..286 | 725 | 100 | Plus |
2L | 23513712 | 2L | 8029606..8029734 | 15..143 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:40:17 has no hits.
BO11492.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:12 Download gff for
BO11492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7380-PA | 1..273 | 17..290 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:34 Download gff for
BO11492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7380-PA | 1..273 | 17..290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:45:20 Download gff for
BO11492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 142..420 | 9..291 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:23:17 Download gff for
BO11492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 142..420 | 9..291 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:23:17 Download gff for
BO11492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8029603..8029733 | 9..142 | 97 | -> | Plus |
2L | 8029816..8029963 | 143..291 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:45:20 Download gff for
BO11492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8029603..8029733 | 9..142 | 97 | -> | Plus |
arm_2L | 8029816..8029963 | 143..291 | 98 | | Plus |
BO11492.complete Sequence
304 bp assembled on 2007-06-22
GenBank Submission: FJ632101
> BO11492.complete
GAAGTTATCAGTCGACATGTCGGGCACATCGCAGAAACACAGGAACTTCG
TTGCGGAGCCAATGGGCAACAAGTCGGTGACGGAACTGGCCGGAATTGGG
GAAACCCTCGGTGGACGCTTGAAGGACGCTGGATTCGATATGGCCTACAC
CGTTTTGGGACAGTATCTGGTGCTGAAAAAGGACGAGGAGCTGTTCAAGG
ACTGGATGAAGGAGGTGTGCCACGCCAGCTCCAAACAGGCATCCGATTGC
TACAACTGTCTCAACGATTGGTGCGAGGAGTTCTTGGCAAGCTTTCTAGA
CCAT
BO11492.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baf-RB | 273 | CG7380-PB | 1..270 | 17..286 | 1350 | 100 | Plus |
baf-RA | 273 | CG7380-PA | 1..270 | 17..286 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baf-RB | 1022 | CG7380-RB | 145..416 | 15..286 | 1360 | 100 | Plus |
baf-RA | 607 | CG7380-RA | 145..416 | 15..286 | 1360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8029815..8029959 | 142..286 | 725 | 100 | Plus |
2L | 23513712 | 2L | 8029606..8029734 | 15..143 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:34:33 has no hits.
BO11492.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:49 Download gff for
BO11492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 1..273 | 17..290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:39 Download gff for
BO11492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 140..418 | 9..291 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:56 Download gff for
BO11492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 147..416 | 17..288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:49 Download gff for
BO11492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 140..418 | 9..291 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:02 Download gff for
BO11492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
baf-RA | 147..416 | 17..288 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:02 Download gff for
BO11492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8029608..8029733 | 17..142 | 100 | -> | Plus |
2L | 8029816..8029959 | 143..288 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:56 Download gff for
BO11492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8029608..8029733 | 17..142 | 100 | -> | Plus |
arm_2L | 8029816..8029959 | 143..288 | 98 | | Plus |
BO11492.pep Sequence
Translation from 16 to 304
> BO11492.pep
MSGTSQKHRNFVAEPMGNKSVTELAGIGETLGGRLKDAGFDMAYTVLGQY
LVLKKDEELFKDWMKEVCHASSKQASDCYNCLNDWCEEFLASFLDH
BO11492.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baf-PB | 90 | CG7380-PB | 1..90 | 1..90 | 487 | 100 | Plus |
baf-PA | 90 | CG7380-PA | 1..90 | 1..90 | 487 | 100 | Plus |