Clone Sequence Records
BO11496.3prime Sequence
299 bp (298 high quality bases) assembled on 2006-04-19
> BO11496.3prime
ATGGTCTAGAAAGCTTGCACCGCTCTTGAAGAGCAGAATGGCCACCTGGC
CCAGGTAGAAATAGATGAAGTGGCGCGTCTCGTGGGTCACATAGGATCCG
AAGTTGCGGCCCACGATGCAGTGCCAGGTGGGGTTGTACTTCTTGTCGAA
CTCCTTCTTGATGAAGGCGGCGATGTCCTTCTCGATGTTGTACTTCTCCA
GGGCCTGGGTGGCGCAGTCAACAGCGTCCTGCTGCATCTCCTCGCTCATG
TCAGCGTTCTTGATCACCGCCTTGCGATCCGACATGTCGACTGATAACT
BO11496.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5450-PA | 270 | Cdlc2-RA | 1..267 | 285..19 | 1335 | 100 | Minus |
CG5450-PB | 270 | Cdlc2-RB | 1..267 | 285..19 | 1335 | 100 | Minus |
CG6998-PB | 270 | ctp-RB | 79..218 | 207..68 | 250 | 87.1 | Minus |
CG6998-PD | 270 | ctp-RD | 79..218 | 207..68 | 250 | 87.1 | Minus |
CG6998-PA | 270 | ctp-RA | 79..218 | 207..68 | 250 | 87.1 | Minus |
CG6998-PC | 270 | ctp-RC | 79..218 | 207..68 | 250 | 87.1 | Minus |
CG6998-PB | 270 | ctp-RB | 1..59 | 285..227 | 145 | 89.8 | Minus |
CG6998-PD | 270 | ctp-RD | 1..59 | 285..227 | 145 | 89.8 | Minus |
CG6998-PA | 270 | ctp-RA | 1..59 | 285..227 | 145 | 89.8 | Minus |
CG6998-PC | 270 | ctp-RC | 1..59 | 285..227 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdlc2-RC | 671 | CG5450-RC | 152..418 | 285..19 | 1335 | 100 | Minus |
Cdlc2-RB | 621 | CG5450-RB | 102..368 | 285..19 | 1335 | 100 | Minus |
Cdlc2-RA | 675 | CG5450-RA | 156..422 | 285..19 | 1335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1344616..1344882 | 285..19 | 1335 | 100 | Minus |
X | 23542271 | X | 4698295..4698455 | 179..19 | 430 | 84.5 | Minus |
X | 23542271 | X | 4691737..4691845 | 285..177 | 305 | 85.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:58:07 has no hits.
BO11496.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:19 Download gff for
BO11496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-PA | 1..270 | 15..285 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:44 Download gff for
BO11496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5450-PA | 1..270 | 15..285 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:54:51 Download gff for
BO11496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 145..425 | 15..295 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:41 Download gff for
BO11496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 145..425 | 15..295 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:39:41 Download gff for
BO11496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1344605..1344885 | 15..295 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:54:51 Download gff for
BO11496.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1344605..1344885 | 15..295 | 97 | | Minus |
BO11496.5prime Sequence
299 bp (298 high quality bases) assembled on 2006-04-19
> BO11496.5prime
GAAGTTATCAGTCGACATGTCGGATCGCAAGGCGGTGATCAAGAACGCTG
ACATGAGCGAGGAGATGCAGCAGGACGCTGTTGACTGCGCCACCCAGGCC
CTGGAGAAGTACAACATCGAGAAGGACATCGCCGCCTTCATCAAGAAGGA
GTTCGACAAGAAGTACAACCCCACCTGGCACTGCATCGTGGGCCGCAACT
TCGGATCCTATGTGACCCACGAGACGCGCCACTTCATCTATTTCTACCTG
GGCCAGGTGGCCATTCTGCTCTTCAAGAGCGGTGCAAGCTTTCTAGACC
BO11496.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5450-PA | 270 | Cdlc2-RA | 1..267 | 17..283 | 1335 | 100 | Plus |
CG5450-PB | 270 | Cdlc2-RB | 1..267 | 17..283 | 1335 | 100 | Plus |
CG6998-PB | 270 | ctp-RB | 79..218 | 95..234 | 250 | 87.1 | Plus |
CG6998-PD | 270 | ctp-RD | 79..218 | 95..234 | 250 | 87.1 | Plus |
CG6998-PA | 270 | ctp-RA | 79..218 | 95..234 | 250 | 87.1 | Plus |
CG6998-PC | 270 | ctp-RC | 79..218 | 95..234 | 250 | 87.1 | Plus |
CG6998-PB | 270 | ctp-RB | 1..59 | 17..75 | 145 | 89.8 | Plus |
CG6998-PD | 270 | ctp-RD | 1..59 | 17..75 | 145 | 89.8 | Plus |
CG6998-PA | 270 | ctp-RA | 1..59 | 17..75 | 145 | 89.8 | Plus |
CG6998-PC | 270 | ctp-RC | 1..59 | 17..75 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdlc2-RC | 671 | CG5450-RC | 152..418 | 17..283 | 1335 | 100 | Plus |
Cdlc2-RB | 621 | CG5450-RB | 102..368 | 17..283 | 1335 | 100 | Plus |
Cdlc2-RA | 675 | CG5450-RA | 156..422 | 17..283 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1344616..1344882 | 17..283 | 1335 | 100 | Plus |
X | 23542271 | X | 4698295..4698455 | 123..283 | 430 | 84.5 | Plus |
X | 23542271 | X | 4691737..4691845 | 17..125 | 305 | 85.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:08:02 has no hits.
BO11496.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:20 Download gff for
BO11496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-PA | 1..270 | 17..287 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:32:46 Download gff for
BO11496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5450-PA | 1..270 | 17..287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:24:43 Download gff for
BO11496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 145..425 | 7..287 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:34:27 Download gff for
BO11496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 145..425 | 7..287 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:34:27 Download gff for
BO11496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1344605..1344885 | 7..287 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:24:43 Download gff for
BO11496.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1344605..1344885 | 7..287 | 97 | | Plus |
BO11496.complete Sequence
301 bp assembled on 2006-10-10
GenBank Submission: FJ632103
> BO11496.complete
GAAGTTATCAGTCGACATGTCGGATCGCAAGGCGGTGATCAAGAACGCTG
ACATGAGCGAGGAGATGCAGCAGGACGCTGTTGACTGCGCCACCCAGGCC
CTGGAGAAGTACAACATCGAGAAGGACATCGCCGCCTTCATCAAGAAGGA
GTTCGACAAGAAGTACAACCCCACCTGGCACTGCATCGTGGGCCGCAACT
TCGGATCCTATGTGACCCACGAGACGCGCCACTTCATCTATTTCTACCTG
GGCCAGGTGGCCATTCTGCTCTTCAAGAGCGGTGCAAGCTTTCTAGACCA
T
BO11496.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdlc2-RC | 270 | CG5450-PC | 1..267 | 17..283 | 1335 | 100 | Plus |
Cdlc2-RB | 270 | CG5450-PB | 1..267 | 17..283 | 1335 | 100 | Plus |
Cdlc2-RA | 270 | CG5450-PA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdlc2-RC | 671 | CG5450-RC | 152..418 | 17..283 | 1335 | 100 | Plus |
Cdlc2-RB | 621 | CG5450-RB | 102..368 | 17..283 | 1335 | 100 | Plus |
Cdlc2-RA | 675 | CG5450-RA | 156..422 | 17..283 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1344616..1344882 | 17..283 | 1335 | 100 | Plus |
X | 23542271 | X | 4698295..4698455 | 123..283 | 430 | 84.5 | Plus |
X | 23542271 | X | 4691737..4691845 | 17..125 | 305 | 85.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:08:28 has no hits.
BO11496.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:29 Download gff for
BO11496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RB | 1..270 | 17..287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:27 Download gff for
BO11496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 126..406 | 7..287 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:26 Download gff for
BO11496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 156..422 | 17..285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:29 Download gff for
BO11496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 126..406 | 7..287 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:15 Download gff for
BO11496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdlc2-RA | 156..422 | 17..285 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:15 Download gff for
BO11496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1344616..1344882 | 17..285 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:26 Download gff for
BO11496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1344616..1344882 | 17..285 | 99 | | Plus |
BO11496.pep Sequence
Translation from 16 to 301
> BO11496.pep
MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKY
NPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSGASFLDH
BO11496.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdlc2-PC | 89 | CG5450-PC | 1..89 | 1..89 | 472 | 100 | Plus |
Cdlc2-PB | 89 | CG5450-PB | 1..89 | 1..89 | 472 | 100 | Plus |
Cdlc2-PA | 89 | CG5450-PA | 1..89 | 1..89 | 472 | 100 | Plus |
ctp-PE | 89 | CG6998-PE | 1..89 | 1..89 | 469 | 98.9 | Plus |
ctp-PC | 89 | CG6998-PC | 1..89 | 1..89 | 469 | 98.9 | Plus |