Clone BO11515 Report

Search the DGRC for BO11515

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:115
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptUpf1-RA
Protein status:BO11515.pep:
Sequenced Size:3574

Clone Sequence Records

BO11515.3prime Sequence

663 bp (661 high quality bases) assembled on 2006-04-19

> BO11515.3prime
ATGGTCTAGAAAGCTTGCATAAGGCTGTGAGAACTGATTCAAGCTCCGCT
CGCCCGACGCGTTAAAGGCAACATCCTGGGATAGCAAACCGTCCATCTGC
GATATTTGCCCAAAGTCCTGTGAAAGTTCCGGCTGCTGGGACAGAGCAAA
TCCGCTGGGCTGGGTCATCTGCAGCGACAAAGGCATCGGGTGCTGACTGT
ATGGAGCAGCATTGCATACCGAGCTTCCTTGTGTTAGCGGTGCCCCGCCA
GTTCCACCGCCCGTTACGCGCGATTTTCCCAGCTTGTTGGTCTTCTTATT
GCCGCCTGGGGTGGCGCTTCGTCCGACTCCGACTCCAGTGACTCCAGGAC
CCGAGTTACCGGGAGAGAAATTACCCGTCTGTTGTTGAATGGCGCGATTC
TGCTTGACCGCCATGATCGCCTGCTGGTGCTGGTTGTAGAAACGCGGCGG
AATATTGCTCATGTTCATGAACATGCCAACCGGAACTGGCATGTTGCCCA
GTGCTGCTGCTCCATGCTCGTTGGATATATAGCCAATGGAGTCGTGGTGG
AGGTGGGCAGCCGCCCAACTGGGTCCAGCCCCTCCGAAGTTGTTGTTGCC
ACCGGCCGCGCCATTGCCTCCGTTGCCCAGGCCAAAGCCCACCATGGAAT
TGGAGCTGGGAGT

BO11515.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1559-PA 3543 Upf1-RA 2896..3540 663..19 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Upf1-RB 4709 CG1559-RB 3269..3913 663..19 3225 100 Minus
Upf1-RA 5187 CG1559-RA 3298..3942 663..19 3225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11901349..11901954 58..663 3030 100 Plus
X 23542271 X 11901241..11901280 19..58 200 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:50:01 has no hits.

BO11515.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:42 Download gff for BO11515.3prime
Subject Subject Range Query Range Percent Splice Strand
Upf1-PA 2896..3543 16..663 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:33:17 Download gff for BO11515.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1559-PA 2896..3543 16..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:28:23 Download gff for BO11515.3prime
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 3298..3942 19..663 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:48:40 Download gff for BO11515.3prime
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 3298..3942 19..663 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:40 Download gff for BO11515.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11901241..11901279 19..57 100 <- Plus
X 11901349..11901954 58..663 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:28:23 Download gff for BO11515.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11795274..11795312 19..57 100 <- Plus
arm_X 11795382..11795987 58..663 100   Plus

BO11515.5prime Sequence

791 bp (762 high quality bases) assembled on 2006-04-19

> BO11515.5prime
GAAGTTATCAGTCGACATGAGCGTGGACACGTACGCGCCCAGCTCGGCGC
TCTCGTTCCTGGACATGGACGACAACGAGCTGCTTCCGGGAGCGGATACT
CAACCCACGCAGTACGATTACCGCGACTTTACCATGCCCTCCACCTCGCA
GAGCCAGACCCAGAACGATCAGCTGGAGATTGCCCAACGCTGCTCTGCCG
GAGACTCGCATCCACGACTGGCCAGCATCACCAACGATCTGGCCGATCTG
CAGTTCGAAGAGGAGGACGACGAGCCTGGCAGCTCGTATGTGAAGGAGCT
GCCGCCGCATGCGTGCAAGTATTGCGGCATCCATGATCCAGCCACGGTGG
TCATGTGCAACAACTGCCGCAAATGGTTTTGCAACGGTCGTGGAAGCACT
TCCGGTTCGCACATCATCAACCATCTGGTGAGGGCCAAGCATCGCGAGGT
GACGCTCCACGGGGAAGGTCCCCTGGGCGAGACAATCCTGGAGTGCTACT
CCTGTGGTGTGCGCAACGTCTTTGTGCTGGGCTTCATTCCGGCCAAGGCC
GATTCTGTGGTCGTGCTGCTCTGCCGTCAGCCGTGTGCCGCCCAGAATTC
GCTAAAGGATATGAACTGGGACCAGGAACAGTGGAAGCCTCTAATTGCAG
ACCGCTGCTTTTTTGGCCTGGCTGGTAAAGCAACCCAGCGAACAGGGACA
GCTGCGAGCTCGCCAAATCTCAGCCGCTCAGATCAACAAGCTGGAGGAGC
TATGGAAGGAGAATATTGAGGCCCCGTTTCAGGATCTGGAG

BO11515.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1559-PA 3543 Upf1-RA 1..647 17..663 3235 100 Plus
CG1559-PA 3543 Upf1-RA 643..774 660..791 635 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Upf1-RB 4709 CG1559-RB 366..1147 9..791 3845 99.5 Plus
Upf1-RA 5187 CG1559-RA 395..1176 9..791 3845 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11904076..11904681 791..185 2970 99.7 Minus
X 23542271 X 11904744..11904919 184..9 850 98.9 Minus
Blast to na_te.dros performed on 2015-02-12 04:58:19 has no hits.

BO11515.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:43 Download gff for BO11515.5prime
Subject Subject Range Query Range Percent Splice Strand
Upf1-PA 1..774 17..791 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:33:19 Download gff for BO11515.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1559-PA 1..774 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:49:15 Download gff for BO11515.5prime
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 395..1176 9..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:54:10 Download gff for BO11515.5prime
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 395..1176 9..791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:54:10 Download gff for BO11515.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11904076..11904681 185..791 99 <- Minus
X 11904744..11904919 9..184 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:49:15 Download gff for BO11515.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11798109..11798714 185..791 99 <- Minus
arm_X 11798777..11798952 9..184 98   Minus

BO11515.complete Sequence

3574 bp assembled on 2008-01-17

GenBank Submission: FJ638684

> BO11515.complete
GAAGTTATCAGTCGACATGAGCGTGGACACGTACGCGCCCAGCTCGGCGC
TCTCGTTCCTGGACATGGACGACAACGAGCTGCTTCCGGGAGCGGATACT
CAACCCACGCAGTACGATTACCGCGACTTTACCATGCCCTCCACCTCGCA
GAGCCAGACCCAGAACGATCAGCTGGAGATTGCCCAACGCTGCTCTGCCG
GAGACTCGCATCCACGACTGGCCAGCATCACCAACGATCTGGCCGATCTG
CAGTTCGAAGAGGAGGACGACGAGCCTGGCAGCTCGTATGTGAAGGAGCT
GCCGCCGCATGCGTGCAAGTATTGCGGCATCCATGATCCAGCCACGGTGG
TCATGTGCAACAACTGCCGCAAATGGTTTTGCAACGGTCGTGGAAGCACT
TCCGGTTCGCACATCATCAACCATCTGGTGAGGGCCAAGCATCGCGAGGT
GACGCTCCACGGGGAAGGTCCCCTGGGCGAGACAATCCTGGAGTGCTACT
CCTGTGGTGTGCGCAACGTCTTTGTGCTGGGCTTCATTCCGGCCAAGGCC
GATTCTGTGGTCGTGCTGCTCTGCCGTCAGCCGTGTGCCGCCCAGAATTC
GCTAAAGGATATGAACTGGGACCAGGAACAGTGGAAGCCTCTAATTGCAG
ACCGCTGCTTTTTGGCCTGGCTGGTAAAGCAACCCAGCGAACAGGGACAG
CTGCGAGCTCGCCAAATCTCAGCCGCTCAGATCAACAAGCTGGAGGAGCT
ATGGAAGGAGAATATTGAGGCCACGTTTCAGGATCTGGAGAAGCCAGGCA
TTGACTCGGAGCCAGCACATGTGCTACTCCGCTACGAGGATGGCTATCAG
TACGAGAAGACCTTTGGGCCGCTGGTCCGCCTTGAGGCCGAATACGACCA
AAAACTGAAGGAGTCTGCCACGCAGGAGAACATCGAAGTACGCTGGGACG
TCGGCCTCAACAAAAAGACCATTGCCTACTTTACGCTGGCGAAGACCGAT
TCGGACATGAAGCTCATGCATGGCGACGAGCTGCGCCTGCATTATGTGGG
CGAGCTGTACAATCCGTGGAGCGAGATCGGCCACGTTATCAAGGTGCCGG
ACAATTTCGGCGATGACGTCGGCCTGGAGCTGAAATCCTCAACGAATGCC
CCGGTTAAGTGCACCAGTAACTTTACGGTGGACTTCATCTGGAAGTGCAC
GTCATTTGATCGCATGACACGTGCTCTGTGCAAATTCGCCATCGATCGCA
ATTCAGTGTCGAACTTCATCTACTCGCGCCTGTTGGGCCACGGTCGTGCG
GATTCCAACGACGAGGTGCTGTTCCGCGGCCCACAACCCAAGCTCTTCAG
TGCCCCGCATCTGCCGGATTTGAATCGCAGCCAGGTGTATGCCGTGAAAC
ACGCGCTTCAGCGTCCGCTCTCGCTAATCCAAGGGCCGCCTGGCACGGGC
AAAACCGTGACCTCGGCGACCATCGTTTACCAGCTGGTCAAGCTCCATGG
TGGCACAGTGCTGGTGTGCGCTCCCAGCAACACGGCCGTGGATCAGCTAA
CTGAGAAGATCCACCGAACAAACCTTAAAGTGGTGCGTGTTTGCGCCAAG
AGCCGTGAGGCCATCGATAGCCCGGTAAGCTTCCTGGCGCTGCACAACCA
AATCCGTAACATGGAGACCAACTCGGAGCTAAAGAAGCTGCAGCAGCTGA
AAGACGAGACCGGCGAGCTGAGCTCAGCAGACGAAAAGCGATACCGCAAC
CTGAAACGTGCCGCCGAGAACCAACTGCTGGAGGCTGCCGACGTTATCTG
CTGCACATGCGTAGGCGCCGGCGATGGTCGTCTATCGCGAGTCAAGTTCA
CCTCGATCCTGATCGATGAGTCTATGCAGTCGACGGAGCCGGAGTGCATG
GTGCCAGTGGTGCTGGGCGCTAAGCAGCTGATCCTCGTGGGCGATCACTG
CCAGCTGGGACCGGTTGTTATGTGCAAGAAAGCAGCTCGTGCCGGCCTCT
CGCAAAGTTTGTTCGAGCGCCTGGTGGTTCTGGGCATCCGTCCGTTCCGG
CTGGAGGTGCAATATCGCATGCACCCCGAGCTGTCCCAGTTCCCGTCCAA
CTTCTTCTACGAGGGATCGCTGCAAAACGGCGTCTGCGCGGAGGATCGTC
GCCTTAAGCTTGATTTCCCCTGGCCACAGCCGGAGAGACCGATGTTCTTT
CTGGTAACACAGGGACAGGAGGAGATTGCCGGCTCCGGCACCTCTTTCCT
CAACCGCACAGAGGCGGCCAACGTGGAAAAGATTACGACGCGATTCCTTA
AGGCAGGCATCAAGCCGGAACAAATTGGAATCATCACGCCTTACGAAGGT
CAGCGCGCTTACCTGGTGCAGTACATGCAATACCAGGGCAGCCTGCACTC
TCGTCTATACCAGGAGATCGAGATCGCCAGTGTGGACGCGTTCCAGGGAC
GTGAGAAGGACATCATTATCATGTCTTGCGTGCGATCTAACGAACGTCAA
GGCATCGGCTTTTTGAACGACCCACGTCGCCTTAATGTTGCCCTTACACG
GGCCAAGTTCGGGATCATCATTGTGGGCAATCCCAAAGTGCTCGCCAAGC
AGCAGCTGTGGAACCATCTGCTCAACTTCTACAAGGACCGTAAGGTGCTC
GTCGAGGGATCTCTGAATAACCTTAAGGAGTCGCTAATCCACTTCCAGAA
GCCCAAAAAGCTTGTCAACAGCATGAACATTGGGGCACACTTTATGTCCA
CCATTATTGCCGATGCCAAGGAAGTGATGGTGCCAGGCTCCATTTACGAC
CGCAGTGGCGGTTACGGCCAAGGTCGCCAAATGGTGGGACAGTCAATGAA
TGGCGGACAGTACGGTGGCAGTGGAGGTGGTCCCTACGGAAACTCACCCC
TCGGCTACGGTACTCCCAGCTCCAATTCCATGGTGGGCTTTGGCCTGGGC
AACGGAGGCAATGGCGCGGCCGGTGGCAACAACAACTTCGGAGGGGCTGG
ACCCAGTTGGGCGGCTGCCCACCTCCACCACGACTCCATTGGCTATATAT
CCAACGAGCATGGAGCAGCAGCACTGGGCAACATGCCAGTTCCGGTTGGC
ATGTTCATGAACATGAGCAATATTCCGCCGCGTTTCTACAACCAGCACCA
GCAGGCGATCATGGCGGTCAAGCAGAATCGCGCCATTCAACAACAGACGG
GTAATTTCTCTCCCGGTAACTCGGGTCCTGGAGTCACTGGAGTCGGAGTC
GGACGAAGCGCCACCCCAGGCGGCAATAAGAAGACCAACAAGCTGGGAAA
ATCGCGCGTAACGGGCGGTGGAACTGGCGGGGCACCGCTAACACAAGGAA
GCTCGGTATGCAATGCTGCTCCATACAGTCAGCACCCGATGCCTTTGTCG
CTGCAGATGACCCAGCCCAGCGGATTTGCTCTGTCCCAGCAGCCGGAACT
TTCACAGGACTTTGGGCAAATATCGCAGATGGACGGTTTGCTATCCCAGG
ATGTTGCCTTTAACGCGTCGGGCGAGCGGAGCTTGAATCAGTTCTCACAG
CCTTATGCAAGCTTTCTAGACCAT

BO11515.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Upf1-RB 3543 CG1559-PB 1..3540 17..3556 17700 100 Plus
Upf1-RA 3543 CG1559-PA 1..3540 17..3556 17700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Upf1-RB 4709 CG1559-RB 366..3913 9..3556 17710 99.9 Plus
Upf1-RA 5187 CG1559-RA 395..3942 9..3556 17710 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11901349..11904681 3517..185 16665 100 Minus
X 23542271 X 11904744..11904919 184..9 850 98.9 Minus
X 23542271 X 11901241..11901280 3556..3517 200 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:50:59 has no hits.

BO11515.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:38 Download gff for BO11515.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 1..3543 17..3559 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:14 Download gff for BO11515.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 372..3911 17..3558 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:39:46 Download gff for BO11515.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 403..3942 17..3558 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:38 Download gff for BO11515.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 364..3911 9..3556 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:37 Download gff for BO11515.complete
Subject Subject Range Query Range Percent Splice Strand
Upf1-RA 403..3942 17..3558 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:37 Download gff for BO11515.complete
Subject Subject Range Query Range Percent Splice Strand
X 11901238..11901279 3518..3558 95 <- Minus
X 11901349..11904681 185..3517 100 <- Minus
X 11904744..11904911 17..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:39:46 Download gff for BO11515.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11795271..11795312 3518..3558 95 <- Minus
arm_X 11795382..11798714 185..3517 100 <- Minus
arm_X 11798777..11798944 17..184 100   Minus

BO11515.pep Sequence

Translation from 16 to 3574

> BO11515.pep
MSVDTYAPSSALSFLDMDDNELLPGADTQPTQYDYRDFTMPSTSQSQTQN
DQLEIAQRCSAGDSHPRLASITNDLADLQFEEEDDEPGSSYVKELPPHAC
KYCGIHDPATVVMCNNCRKWFCNGRGSTSGSHIINHLVRAKHREVTLHGE
GPLGETILECYSCGVRNVFVLGFIPAKADSVVVLLCRQPCAAQNSLKDMN
WDQEQWKPLIADRCFLAWLVKQPSEQGQLRARQISAAQINKLEELWKENI
EATFQDLEKPGIDSEPAHVLLRYEDGYQYEKTFGPLVRLEAEYDQKLKES
ATQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLHYVGELYNP
WSEIGHVIKVPDNFGDDVGLELKSSTNAPVKCTSNFTVDFIWKCTSFDRM
TRALCKFAIDRNSVSNFIYSRLLGHGRADSNDEVLFRGPQPKLFSAPHLP
DLNRSQVYAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLV
CAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNME
TNSELKKLQQLKDETGELSSADEKRYRNLKRAAENQLLEAADVICCTCVG
AGDGRLSRVKFTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPV
VMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEG
SLQNGVCAEDRRLKLDFPWPQPERPMFFLVTQGQEEIAGSGTSFLNRTEA
ANVEKITTRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQE
IEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKFGI
IIVGNPKVLAKQQLWNHLLNFYKDRKVLVEGSLNNLKESLIHFQKPKKLV
NSMNIGAHFMSTIIADAKEVMVPGSIYDRSGGYGQGRQMVGQSMNGGQYG
GSGGGPYGNSPLGYGTPSSNSMVGFGLGNGGNGAAGGNNNFGGAGPSWAA
AHLHHDSIGYISNEHGAAALGNMPVPVGMFMNMSNIPPRFYNQHQQAIMA
VKQNRAIQQQTGNFSPGNSGPGVTGVGVGRSATPGGNKKTNKLGKSRVTG
GGTGGAPLTQGSSVCNAAPYSQHPMPLSLQMTQPSGFALSQQPELSQDFG
QISQMDGLLSQDVAFNASGERSLNQFSQPYASFLDH

BO11515.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Upf1-PB 1180 CG1559-PB 1..1180 1..1180 6209 100 Plus
Upf1-PA 1180 CG1559-PA 1..1180 1..1180 6209 100 Plus
CG7504-PC 1417 CG7504-PC 903..1416 440..905 428 29.9 Plus
CG7504-PB 1676 CG7504-PB 1162..1675 440..905 428 29.9 Plus
CG6701-PD 1333 CG6701-PD 576..1041 423..879 405 30 Plus