Clone Sequence Records
BO11523.3prime Sequence
435 bp (429 high quality bases) assembled on 2006-04-19
> BO11523.3prime
ATGGTCTAGAAAGCTTGCCTCCTTGAAGATACCGCGCGCCTTGGCAGACG
GCTTGCGCACCCTGCCTCTGCTGCTAACGTTCACCTGCTGTTCTTCCGAG
TCCACCGAAGTACCGTCCTCTTCTTCCTCCTGGTCCCGCTCGGTGGAGGC
CTGTGATCGCTCCTGAGAGCTGGCATGAGCGTCGCCGTTACGGATTCGTT
TACTCCGATGGGAATATCCAGCCGCCGCCTCTTCCTCCTCGGACTGCTCA
TTGTAGCGCGGTCTCTTTTGGTTGCGCCCGGCTCGCTGGTTTCCACCCCG
GTTGGCGCGACGACTCCGCGGCACAACATAGTCATCATCGTCATCGTTGT
CGTTCGCGATGGAGTTATTGGATGGCGGGCGACGTGTGCGTCGCAGCGGA
CGCTCCTGAGTTGTTGCGGAGGAGGAGGAGGCTTT
BO11523.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31132-PA | 6699 | BRWD3-RA | 6284..6696 | 431..19 | 2065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BRWD3-RA | 7244 | CG31132-RA | 6395..6811 | 435..19 | 2070 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24327770..24328186 | 435..19 | 2070 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:51:50 has no hits.
BO11523.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:58 Download gff for
BO11523.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-PA | 6280..6699 | 16..435 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:33:41 Download gff for
BO11523.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31132-PA | 6280..6699 | 16..435 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:36:38 Download gff for
BO11523.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-RA | 6395..6811 | 19..435 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:10 Download gff for
BO11523.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-RA | 6395..6811 | 19..435 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:10 Download gff for
BO11523.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24327770..24328186 | 19..435 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:36:38 Download gff for
BO11523.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20153492..20153908 | 19..435 | 99 | | Minus |
BO11523.5prime Sequence
754 bp (650 high quality bases) assembled on 2006-04-19
> BO11523.5prime
GAAGTTATCAGTCGACATGGAAACTAGACAACCCAGTTCCGGTGATGATC
TAAAGCCAGAGCTGTACTTCCTCATTTCCAAGTTCCTGGCCGCGGGACCG
CTGGAGGAGACGGCGAAGGTCTTGATCCGGGAACTCGAAGAGAAGAAGGT
TTTGCCGCGTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTG
AGGAATTGGAACGAAAGTACAAGCACATTGGCGCCAATCACTTGCTTGAA
ATATGCAGTCGTCTGGGTCCACTGGTGGATCGCGAGCTTCCGCCCAGTGT
TCCGGGCATCAACTCGCTGTTGGGTACTGGGCGCCAGAACCTCCTGCGCA
CCAAGGAAACCGTCTACTGCCATCGCTCCTTAAGGGACTACTGCACCCGC
CTGAATGGAGTCTCGCTGCCGGATTCGGTCCTTACAAAGCCGACCCACAA
CTTAGATCGCGTTCTAACTGGACGGGAACACGGCGGGGAAGTCCGTCGCA
AGCTCCTCGTGCCCACGGACCTCTACCGCCGAACAAAATTGCTCCGTCGC
ACTGTGGGCCACCTGTCCTCAGTGTACTGTGTTCTGTTTGATCGCACAGG
AAGATACATCATCACCGGAGCCGATGATCTACTTATTAAGATATGGTCAG
CGGCAGATGGCCGCCTGCTGGGCACTCTGCGAGGCGCCTCATCCGAGATT
ACAGACATAGCCATTAACTTGGACAATACGATGCTGGGTGCCGGGTCATT
GGAT
BO11523.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31132-PA | 6699 | BRWD3-RA | 1..738 | 17..754 | 3640 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BRWD3-RA | 7244 | CG31132-RA | 116..853 | 17..754 | 3660 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24320974..24321274 | 454..754 | 1475 | 99.3 | Plus |
| 3R | 32079331 | 3R | 24320667..24320914 | 208..455 | 1240 | 100 | Plus |
| 3R | 32079331 | 3R | 24319406..24319469 | 57..120 | 320 | 100 | Plus |
| 3R | 32079331 | 3R | 24320015..24320077 | 147..209 | 315 | 100 | Plus |
| 3R | 32079331 | 3R | 24319115..24319157 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:17:15 has no hits.
BO11523.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:08:59 Download gff for
BO11523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-PA | 1..738 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:33:42 Download gff for
BO11523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31132-PA | 1..738 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:04:14 Download gff for
BO11523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-RA | 116..853 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:01 Download gff for
BO11523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-RA | 116..853 | 17..754 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:01 Download gff for
BO11523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24319115..24319157 | 17..59 | 100 | -> | Plus |
| 3R | 24319409..24319467 | 60..118 | 100 | -> | Plus |
| 3R | 24319592..24319621 | 119..148 | 100 | -> | Plus |
| 3R | 24320017..24320076 | 149..208 | 100 | -> | Plus |
| 3R | 24320668..24320914 | 209..455 | 100 | -> | Plus |
| 3R | 24320976..24321274 | 456..754 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:04:14 Download gff for
BO11523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20144837..20144879 | 17..59 | 100 | -> | Plus |
| arm_3R | 20145131..20145189 | 60..118 | 100 | -> | Plus |
| arm_3R | 20145314..20145343 | 119..148 | 100 | -> | Plus |
| arm_3R | 20145739..20145798 | 149..208 | 100 | -> | Plus |
| arm_3R | 20146390..20146636 | 209..455 | 100 | -> | Plus |
| arm_3R | 20146698..20146996 | 456..754 | 99 | | Plus |
BO11523.complete Sequence
6730 bp assembled on 2009-09-17
GenBank Submission: FJ632104
> BO11523.complete
GAAGTTATCAGTCGACATGGAAACTAGACAACCCAGTTCCGGTGATGATC
TAAAGCCAGAGCTGTACTTCCTCATTTCCAAGTTCCTGGCCGCGGGACCG
CTGGAGGAGACGGCGAAGGTCTTGATCCGGGAACTCGAAGAGAAGAAGGT
TTTGCCGCGTCGTCTCGATTGGCAGGGAAACGAGCATGAGCAGACCTTTG
AGGAATTGGAACGAAAGTACAAGCACATTGGCGCCAATCACTTGCTTGAA
ATATGCAGTCGTCTGGGTCCACTGGTGGATCGCGAGCTTCCGCCCAGTGT
TCCGGGCATCAACTCGCTGTTGGGTACTGGGCGCCAGAACCTCCTGCGCA
CCAAGGAAACCGTCTACTGCCATCGCTCCTTAAGGGACTACTGCACCCGC
CTGAATGGAGTCTCGCTGCCGGATTCGGTCCTTACAAAGCCGACCCACAA
CTTAGATCGCGTTCTAACTGGACGGGAACACGGCGGGGAAGTCCGTCGCA
AGCTCCTCGTGCCCACGGACCTCTACCGCCGAACAAAATTGCTCCGTCGC
ACTGTGGGCCACCTGTCCTCAGTGTACTGTGTTCTGTTTGATCGCACAGG
AAGATACATCATCACCGGAGCCGATGATCTACTTATTAAGATATGGTCAG
CGGCAGATGGCCGCCTGCTGGCCACTCTGCGAGGCGCCTCATCCGAGATT
ACAGACATAGCCATTAACTTGGACAATACGATGCTGGCTGCCGGGTCATT
GGATCACATACTAAGAGTGTGGGACATGCAAACCACATCACCCATCGCCG
TACTGTCTGCTCACACGGGCATGATAACTTCGGTTAACTTTTGTCCGTCG
CCACGTAGCGATCTGAAATATCTGGTGACTACCAGCACAGATGGATCGAT
CGCCTTCTGGCAATACTCAACGCCGCGCGGGCAAAAGATCACGTTTGCCC
CGAAGCCAACGCAGTATCATGAGAAACTGCGGCCCGGACAAGCTCAGATG
ATGTGTACCACCTTTTCGCCAGGAGGCATTTTTCTGGCCGCTGGGTCTGC
CGATCACCATGTGCGCGTCTATATGATGGGCGAGGACGGTCCGAAGCGAA
TATTGGAGACGGAAGCTTACACAGATGCCGTGGACTCGGTGCAGTGGTCG
CATCGTGGACTGAGATTTATATCGGGGAGCAAGGACGGCACAGCACACAT
CTGGACGTTTGAGTCGCAGCAGTGGAAAAGTTCCAAACTATGCATGACGG
AGCGTCTGGCCAGCTGCCCGGAACCAGAGGAGGGAAAGAGGCTTAAGGTA
ACCATGGTGGCTTGGGATGCCTCGGACCGTTATGTCATCACCGCCGTAAA
CGATTTTACTATAAAAATCTGGGACTCGAAGTCAGCCAAGCTGCATCGTG
TTCTGCGTGGGCACAAGGATGAGCTTTATGTGCTTGAGTCGAACCCAAGA
GATGAGCATGTCCTGCTTTCCGCCGGGCACGATGGCCAGGTATTTCTGTG
GGACATCGAGCAGGGCGTTTGTGTGGCCAACTTCCTTAACGACATCGATG
GCCAAGGCCATGGCAGTGTCTTTGATGCAAAGTGGTCACCGGATGGCACA
ATGATAGCTGCCACCGATTCGCATGGACACATCCTGATTTTTGGTTTGGG
CGTGTGCATTGAAAAGTACAAAATGCTTCCCACGGAGCTGTTCTTTCACA
CGGATTTTCGACCTTTATTGAGAGATGCGCAGCACCATGTGGTGGACGAG
CAGACGCAGATAATGCCGCACCTAATGCCCCCGCCTTTCCTGGTCGATGC
AGATGGCAACCCGCATCCATCAAGGTTTCAACGATTTGTGCCTGGTCGTG
AGAGCTGTAGCCTAGACCAATTGATTCCAAATCTTACGGTAGGCGTGGAT
GGCGTAGTAATCGACGATGGAGGTGCAGGTGGAGATGCTGTTGTGGCCGC
TGCACCCGCTGAAGCTCCGCCAGCCGCATTGCCCCCTGCTGCTGCTGGAG
GACCACAGGGAGCTAACTACTCCCATATCGACCGCATGATTGCAGCCTTG
GCCAATCGGCAGTCGGTTAATGTAAATGCCAATGATGCCAATCCGACCAA
CGGCAACCAGTCCTTCGAACGTTTGACCAATCGTCAAATGCCGGACTCCA
ATGGCAGGCAATCGTCACGTGGCAATGTCCTGGGTAGTCGTTTGAGCACG
CCTCGCCAAGGATGGGGTGCCGCAGCTGCCGCGCCAGTTGAGGATCAAGC
AGGGCCGTCTCAACCTCCGGCAGAACCTGCAGCCGAACCTGGCCAGGCAC
AAGTCCAACAGGCGCTGCCTCTGAAATTCATCCGTCGCACTTATGTGCGT
CCCATGAAGTATCCCCAGTTGCAAAACCTTAAGCAGACTATTTACTCTGC
CGGTCAGTTTGAAAAGCAGGAGTACAAACGCGAAATGCGACGCCGACCCA
TCATGATAAACACTGCCAGTGCAGCATCTTCGCAGCAGCCAGGAAGCGTT
GGCAGGCCACGAAACACACGTGGCAATGGCGGCGGCGCAAGAGCTGGACG
AAGACGTGGCCCCCAGCCAGCTGGCGGACAGCCACAACCCGCTTATCGCA
CCCGCGCTGTTCGGGATCAGGAGCCGGAGCACTACGATGAGGTAGCGCCG
CCACCCGAGGAAGAGGAGGAAGATGTGTCCAGCAACTCGTCCGGCGACAC
GAGCTACTCGAATGTGGAAGAAAACCTAGAGGACAGCAGCGATGAGTCGG
AAACGGACAGTTCCGATTACTCTGACTGGGTGGCGGATACTCCTGGCCCG
AATCTGGAACCACCAAAACGATCCAAGCGTAAGCCACTCTCACGGCGACC
CCGGAGTAGTGATGACAGCAGCGATGATGAGCGAGCGGGCAGATCCAGAG
GTGGGCAGGTTACGGCCCGGAAGGTTGGACGTAAAACTGTTTTGTTTCCG
CCCACAGATGCAAATGGAGAGATACCGGAGCTTTATCGTCCCGCTGAGTG
GCTATCTGAGGTGATTCCACGTAAGGCACCCTATTACCCCCAGATGGGTG
ATGAGGTAGTCTACTTCCGGCAAGGACACGCAAAGTACTTGGATGCAGTC
CGCCTGAAAAAGGTCTACAAGCTCTCGCACAGCTCGGAGCCGTGGAACTT
TCACACACTGCGCGACCACGAGCTGGTGCGTGTGATTGGAATCAAGTACG
AAATCCGCCCACCCCGATTATGTTGCTTGAAGTTGGCCATCATCGATGAG
GAGGGCAACATGACGGGGACAACGTTCAAGATCAAGTACCATGACATGCC
CGACGTTTTGGACTTTTTAGTGCTGCGGCAGACCTTCGATCTTGCAGTGC
AGCGCAACTGGAGCATTGGTGACCGGTTTCGCTGCATGATTGTCGATGGC
TGGTGGATGGGTCAGATTGAATCGCGCCACGCCCTCTCTGCTGACTTCCC
CGACTCGTCCTTCATGTGTTTCCGCGTGCGCTGGGATAATGGAGAGTATG
AGTTTATGAGTCCCTGGGACATGGAACCCATCGATCAGCAAAGAGTACCG
GACGAGGTGGGAGGTGCTGTTCCAGTTCTACCGGAGGAGATTCGCGCCAC
TCTATACCAGCCCAAGTCCGAGGAATGGCACAGAGGGGATCGCGATGGCA
CCTGCAGGCGAATTATCAATGGATTGGAGCAGGTTATGCGTCTCTCTATC
GCAGAGCATTTCCTGGCCCCCGTGGACCTTAACATATATCCAGACTACGC
TTATTTGATCGAATATCCCATTGACCTGACCACAATTAAATCTCGCTTTG
AGAATCACTTCTACCGCAGAATAACCTCAGCCCAGTTCGATGTACGCTAC
CTAGCCACCAATGCGGAGCAGTACAATCGCCGACACGCAATTATCGTCAA
GCATTCGCGAATTGTGACAGATCTTTGTTTGAGGATCATCAGGGAACCGG
ATGAGATAGATGTGGCTGCTGTTTACCATCAGCTTGCGGATGTGTACCAT
TCGTCCGAGTCGGAGAACGAGGTAGATTCGGATGTAGTGCCATCGACCAG
CACAGGGCCAACTACTTCAGCAGCTGCAGCAGCAGCTAGGCAAAGAGTAT
CCTCAGCCAGGCGATCCACTCGAATTCACTCGGAAGGAGACTGGCGTGCC
GATTGTCGTCAGCTGCTTGATCTTATGTGGGCGAGGACAGATTCGGCGCC
GTTCCGCGAGCCCGTTGACACCATCGACTTCCCTGACTACCTGGAGATCA
TAGCTACTCCAATGGATCTGCGCACTGTAAAGGAGGATCTGCTGGGCGGC
AACTACGATGATCCGTTGGACTTTGCCAAGGATGTGCGGCTGATCTTCCA
AAACTCCAAGAACTACAACACCAACAAGCGCTCACGGATTTATGCCATGA
CCTTGCGACTCAGTGCGCTATTTGAGTCGCATATCAAGACAGTGGTCACC
AGCTGGAAGGCGGCATTAAGGCGCGCTAATAAAAACAAGTCCGGCAGCAG
TGGAGGAGGACGCGGTGGTTCCAGCAGCAGTCCCAACAAGCGAGTCAAAA
AGGAGCGATCCACGCGCCGTAATCAAAAGCCAACAGCAGCGGCCAGAAGA
TTGCCAGTCGCCAACTCCAGTGAAGATGAGGACGAGGAGGATGATGATGA
TGACGACGATGATGATGATGAGGAAGAGGCATCAACGAGGGGGCGCTCTC
GTCGGCGAAACGGTGTGGCCGTAAGTGCTAGTTCCTCTGGCTCCAATCGC
GTGACTTCTTCATCCGCCGCCCAACAGCGTCGAGGCAAAAGCAGCAGTAG
CGAGGAGGAAGAGGAGGAGGAAACCAGTGCGCAGGCCACGTCGGATGCCA
GCAGCGATGAAGAGGAAAGAGCCCAATCCAATGACAGTTCGCCCCAGCAG
ACACGCACGCGCAGGGCAAGGCAGCGGCAACGGCTGAGCGATGACTCCAA
TATCAACGATTCCGAGGATAGTTACAACCCCAACGAGGGACGCGGCAGTC
GGCGACGTCCAGGTGCCGCACGCCCGTCCAGCAATAGGCAGACAAATGGC
CACTCCAGCAAGAGGCGACGTTTGAACAAAAGTCCAGCCAATGCTGCACC
TGGCCCTAGTTTGCCACGTCGGACACGTCGCATAGCAGGCAGCTCCGCAG
AAGAGGCTGCATCTCACTCACAACACGATGAGAGCACACAGGATAGCCAG
ATAGGACGTCGAAAGGGACGCTCGGCAAGCAGCAGGTCAATTGGCAATGG
ACCAAGTACCAGTGCCGCAGCTGCCGCCAACTCCAGCCTTGAAAGTCCGT
CACGGAATACTCGAGCCAACGGAACCAGGACCTCTTCGCATCTTGGAGCC
GAAAATGATCACAGTTACCACCTGCCAGTGCGCAACGGGCGCATTATCGA
GTCCGATACGGACTCTCCTGTCATCAGACCCACGCGACAGAGCGCCAAGA
GGGCGCTAATGGACTGGGGTCGTGGAAGCGATATTGAAGAGGAGGAGGAG
GAAGAGGAAGAAGACAGCGAGGAAGCCGAGGAGATACTGCCAACACCTAC
AAAGGACGACTTGCCCTCTACCAGCCGAGCCGCTTTGGCTCAGGCGGCTG
CTGGTCCTTCTCGCCAGCTACGCACGAACCGCAACACCGTCGTTCGTCCA
GCCCAGAGTGACGACGATGACGACGACGACAGTGACAACGAGCCGCTGGC
CAACAATCAACAAAAAAATTATCAATCACCTGCAAAATCTAGCTCAACCG
CAACAGTGGCCCCTCATCCACTGAGCCTGCGCCGTCGATTAGCCTCGCCG
CCAGAACGGAATACCCATATGACCCGTTCCCATGCCACCTCCACAACGTC
CTCGGCCGCAGCATCACGGGCAGAACAACAACCAGCGGTTTCCACCCACG
ATCACAACTACCTAGGCAACGTGAATTCATCGAGGGCACCGCGCCGCATT
CTTTCACGCCACCAACGAAATGCCGACGAGTTGGATACCAGTCTAGATGT
CCTGGAAAACTCGCGTCTGCTCTCAGCCATAGCCAATCACCGGCGACCCA
CCTCTACCACGAACAGCAACAGTGCGAGCAACGTGGTTACAAGGCGTCTG
CGTGGTCGCGCTAGCCAGGCGAATTCGCACGACGAGGATCATGAGGAAGA
GGAGGCTGCTGCTTCCGATGAGGGCACTGATGGAGGCTCTAGCTCGCAGA
GCTACGAAGATGAGGATGAAGACTCCGACTCGGAAGACAATCAGCCGCTG
ACCAGCTACGTATCGCCCAGCAATGGTCGTCCGAGGCGAAAGGCAAAAAC
CTCCTCCTCCTCCGCAACAACTCAGGAGCGTCCGCTGCGACGCACACGTC
GCCCGCCATCCAATAACTCCATCGCGAACGACAACGATGACGATGATGAC
TATGTTGTGCCGCGGAGTCGTCGCGCCAACCGGGGTGGAAACCAGCGAGC
CGGGCGCAACCAAAAGAGACCGCGCTACAATGAGCAGTCCGAGGAGGAAG
AGGCGGCGGCTGGATATTCCCATCGGAGTAAACGAATCCGTAACGGCGAC
GCTCATGCCAGCTCTCAGGAGCGATCACAGGCCTCCACCGAGCGGGACCA
GGAGGAAGAAGAGGACGGTACTTCGGTGGACTCGGAAGAACAGCAGGTGA
ACGTTAGCAGCAGAGGCAGGGTGCGCAAGCCGTCTGCCAAGGCGCGCGGT
ATCTTCAAGGAGGCAAGCTTTCTAGACCAT
BO11523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BRWD3-RA | 6699 | CG31132-PA | 1..6696 | 17..6712 | 33480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BRWD3-RA | 7244 | CG31132-RA | 116..6811 | 17..6712 | 33480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24322396..24324405 | 1675..3684 | 10050 | 100 | Plus |
| 3R | 32079331 | 3R | 24325749..24326895 | 4387..5533 | 5735 | 100 | Plus |
| 3R | 32079331 | 3R | 24327189..24328186 | 5715..6712 | 4990 | 100 | Plus |
| 3R | 32079331 | 3R | 24320974..24321783 | 454..1263 | 4050 | 100 | Plus |
| 3R | 32079331 | 3R | 24322024..24322338 | 1361..1675 | 1575 | 100 | Plus |
| 3R | 32079331 | 3R | 24325004..24325278 | 4113..4387 | 1375 | 100 | Plus |
| 3R | 32079331 | 3R | 24324456..24324719 | 3680..3943 | 1320 | 100 | Plus |
| 3R | 32079331 | 3R | 24320667..24320914 | 208..455 | 1240 | 100 | Plus |
| 3R | 32079331 | 3R | 24326955..24327137 | 5532..5714 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 24324775..24324947 | 3941..4113 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 24321860..24321963 | 1261..1364 | 505 | 99 | Plus |
| 3R | 32079331 | 3R | 24319406..24319469 | 57..120 | 320 | 100 | Plus |
| 3R | 32079331 | 3R | 24320015..24320077 | 147..209 | 315 | 100 | Plus |
| 3R | 32079331 | 3R | 24319115..24319157 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 555..616 | 5638..5696 | 167 | 79 | Plus |
BO11523.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:26 Download gff for
BO11523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-RA | 97..6792 | 17..6714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:21 Download gff for
BO11523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-RA | 116..6811 | 17..6714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:52 Download gff for
BO11523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-RA | 97..6792 | 17..6714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:57 Download gff for
BO11523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BRWD3-RA | 116..6811 | 17..6714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:57 Download gff for
BO11523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24324459..24324718 | 3683..3942 | 100 | -> | Plus |
| 3R | 24324777..24324947 | 3943..4113 | 100 | -> | Plus |
| 3R | 24325005..24325278 | 4114..4387 | 100 | -> | Plus |
| 3R | 24319115..24319157 | 17..59 | 100 | -> | Plus |
| 3R | 24319409..24319467 | 60..118 | 100 | -> | Plus |
| 3R | 24319592..24319621 | 119..148 | 100 | -> | Plus |
| 3R | 24320017..24320076 | 149..208 | 100 | -> | Plus |
| 3R | 24320668..24320914 | 209..455 | 100 | -> | Plus |
| 3R | 24320976..24321783 | 456..1263 | 100 | -> | Plus |
| 3R | 24321863..24321959 | 1264..1360 | 100 | -> | Plus |
| 3R | 24322024..24322338 | 1361..1675 | 100 | -> | Plus |
| 3R | 24322397..24324403 | 1676..3682 | 100 | -> | Plus |
| 3R | 24325750..24326895 | 4388..5533 | 100 | -> | Plus |
| 3R | 24326957..24327137 | 5534..5714 | 100 | -> | Plus |
| 3R | 24327189..24328186 | 5715..6714 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:21 Download gff for
BO11523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20144837..20144879 | 17..59 | 100 | -> | Plus |
| arm_3R | 20145131..20145189 | 60..118 | 100 | -> | Plus |
| arm_3R | 20145314..20145343 | 119..148 | 100 | -> | Plus |
| arm_3R | 20145739..20145798 | 149..208 | 100 | -> | Plus |
| arm_3R | 20146390..20146636 | 209..455 | 100 | -> | Plus |
| arm_3R | 20146698..20147505 | 456..1263 | 100 | -> | Plus |
| arm_3R | 20147585..20147681 | 1264..1360 | 100 | -> | Plus |
| arm_3R | 20147746..20148060 | 1361..1675 | 100 | -> | Plus |
| arm_3R | 20148119..20150125 | 1676..3682 | 100 | -> | Plus |
| arm_3R | 20150181..20150440 | 3683..3942 | 100 | -> | Plus |
| arm_3R | 20150499..20150669 | 3943..4113 | 100 | -> | Plus |
| arm_3R | 20150727..20151000 | 4114..4387 | 100 | -> | Plus |
| arm_3R | 20151472..20152617 | 4388..5533 | 100 | -> | Plus |
| arm_3R | 20152679..20152859 | 5534..5714 | 100 | -> | Plus |
| arm_3R | 20152911..20153908 | 5715..6714 | 99 | | Plus |
BO11523.pep Sequence
Translation from 16 to 6730
> BO11523.pep
METRQPSSGDDLKPELYFLISKFLAAGPLEETAKVLIRELEEKKVLPRRL
DWQGNEHEQTFEELERKYKHIGANHLLEICSRLGPLVDRELPPSVPGINS
LLGTGRQNLLRTKETVYCHRSLRDYCTRLNGVSLPDSVLTKPTHNLDRVL
TGREHGGEVRRKLLVPTDLYRRTKLLRRTVGHLSSVYCVLFDRTGRYIIT
GADDLLIKIWSAADGRLLATLRGASSEITDIAINLDNTMLAAGSLDHILR
VWDMQTTSPIAVLSAHTGMITSVNFCPSPRSDLKYLVTTSTDGSIAFWQY
STPRGQKITFAPKPTQYHEKLRPGQAQMMCTTFSPGGIFLAAGSADHHVR
VYMMGEDGPKRILETEAYTDAVDSVQWSHRGLRFISGSKDGTAHIWTFES
QQWKSSKLCMTERLASCPEPEEGKRLKVTMVAWDASDRYVITAVNDFTIK
IWDSKSAKLHRVLRGHKDELYVLESNPRDEHVLLSAGHDGQVFLWDIEQG
VCVANFLNDIDGQGHGSVFDAKWSPDGTMIAATDSHGHILIFGLGVCIEK
YKMLPTELFFHTDFRPLLRDAQHHVVDEQTQIMPHLMPPPFLVDADGNPH
PSRFQRFVPGRESCSLDQLIPNLTVGVDGVVIDDGGAGGDAVVAAAPAEA
PPAALPPAAAGGPQGANYSHIDRMIAALANRQSVNVNANDANPTNGNQSF
ERLTNRQMPDSNGRQSSRGNVLGSRLSTPRQGWGAAAAAPVEDQAGPSQP
PAEPAAEPGQAQVQQALPLKFIRRTYVRPMKYPQLQNLKQTIYSAGQFEK
QEYKREMRRRPIMINTASAASSQQPGSVGRPRNTRGNGGGARAGRRRGPQ
PAGGQPQPAYRTRAVRDQEPEHYDEVAPPPEEEEEDVSSNSSGDTSYSNV
EENLEDSSDESETDSSDYSDWVADTPGPNLEPPKRSKRKPLSRRPRSSDD
SSDDERAGRSRGGQVTARKVGRKTVLFPPTDANGEIPELYRPAEWLSEVI
PRKAPYYPQMGDEVVYFRQGHAKYLDAVRLKKVYKLSHSSEPWNFHTLRD
HELVRVIGIKYEIRPPRLCCLKLAIIDEEGNMTGTTFKIKYHDMPDVLDF
LVLRQTFDLAVQRNWSIGDRFRCMIVDGWWMGQIESRHALSADFPDSSFM
CFRVRWDNGEYEFMSPWDMEPIDQQRVPDEVGGAVPVLPEEIRATLYQPK
SEEWHRGDRDGTCRRIINGLEQVMRLSIAEHFLAPVDLNIYPDYAYLIEY
PIDLTTIKSRFENHFYRRITSAQFDVRYLATNAEQYNRRHAIIVKHSRIV
TDLCLRIIREPDEIDVAAVYHQLADVYHSSESENEVDSDVVPSTSTGPTT
SAAAAAARQRVSSARRSTRIHSEGDWRADCRQLLDLMWARTDSAPFREPV
DTIDFPDYLEIIATPMDLRTVKEDLLGGNYDDPLDFAKDVRLIFQNSKNY
NTNKRSRIYAMTLRLSALFESHIKTVVTSWKAALRRANKNKSGSSGGGRG
GSSSSPNKRVKKERSTRRNQKPTAAARRLPVANSSEDEDEEDDDDDDDDD
DEEEASTRGRSRRRNGVAVSASSSGSNRVTSSSAAQQRRGKSSSSEEEEE
EETSAQATSDASSDEEERAQSNDSSPQQTRTRRARQRQRLSDDSNINDSE
DSYNPNEGRGSRRRPGAARPSSNRQTNGHSSKRRRLNKSPANAAPGPSLP
RRTRRIAGSSAEEAASHSQHDESTQDSQIGRRKGRSASSRSIGNGPSTSA
AAAANSSLESPSRNTRANGTRTSSHLGAENDHSYHLPVRNGRIIESDTDS
PVIRPTRQSAKRALMDWGRGSDIEEEEEEEEEDSEEAEEILPTPTKDDLP
STSRAALAQAAAGPSRQLRTNRNTVVRPAQSDDDDDDDSDNEPLANNQQK
NYQSPAKSSSTATVAPHPLSLRRRLASPPERNTHMTRSHATSTTSSAAAS
RAEQQPAVSTHDHNYLGNVNSSRAPRRILSRHQRNADELDTSLDVLENSR
LLSAIANHRRPTSTTNSNSASNVVTRRLRGRASQANSHDEDHEEEEAAAS
DEGTDGGSSSQSYEDEDEDSDSEDNQPLTSYVSPSNGRPRRKAKTSSSSA
TTQERPLRRTRRPPSNNSIANDNDDDDDYVVPRSRRANRGGNQRAGRNQK
RPRYNEQSEEEEAAAGYSHRSKRIRNGDAHASSQERSQASTERDQEEEED
GTSVDSEEQQVNVSSRGRVRKPSAKARGIFKEASFLDH
BO11523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BRWD3-PA | 2232 | CG31132-PA | 1..2232 | 1..2232 | 11626 | 100 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 306..1057 | 1502..2224 | 291 | 19.3 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 271..957 | 1553..2224 | 277 | 19.6 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 273..1027 | 1502..2226 | 261 | 19.2 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 561..1210 | 1490..2126 | 242 | 19.3 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 455..1220 | 1502..2219 | 238 | 19.3 | Plus |
| wds-PB | 361 | CG17437-PB | 70..357 | 181..495 | 233 | 24.5 | Plus |
| wds-PA | 361 | CG17437-PA | 70..357 | 181..495 | 233 | 24.5 | Plus |
| ago-PA | 1326 | CG15010-PA | 985..1302 | 171..535 | 230 | 24.5 | Plus |
| wds-PB | 361 | CG17437-PB | 67..316 | 220..498 | 225 | 23.8 | Plus |
| wds-PA | 361 | CG17437-PA | 67..316 | 220..498 | 225 | 23.8 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 777..1313 | 1502..2044 | 201 | 19.7 | Plus |
| wds-PB | 361 | CG17437-PB | 80..279 | 333..551 | 175 | 25.3 | Plus |
| wds-PB | 361 | CG17437-PB | 147..331 | 174..372 | 175 | 23.9 | Plus |
| wds-PA | 361 | CG17437-PA | 80..279 | 333..551 | 175 | 25.3 | Plus |
| wds-PA | 361 | CG17437-PA | 147..331 | 174..372 | 175 | 23.9 | Plus |
