Clone BO11530 Report

Search the DGRC for BO11530

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:115
Well:30
Vector:pDNR-Dual
Associated Gene/Transcripthdc-RA
Protein status:BO11530.pep: Imported from assembly
Sequenced Size:1984

Clone Sequence Records

BO11530.complete Sequence

1984 bp assembled on 2010-04-13

GenBank Submission: KX796576

> BO11530.complete
GAAGTTATCAGTCGACATGGCTCCGCGTCGCAACAGCAACATCAGCAGCA
GCGGCAACAGCACCCAGCAGCAGCACCAGCAACAGTTGCAGCAGCAGCAC
CAGACGCAGCAGCATCAACTGCTGCAGTTCTACGCGGAGAACGTGAATTC
TTCAGGCGTCCTAATGGCGCCCATGCAGGGAACCGGTGGCGTTGGCGGCG
TTGGCGGCGGGGGCATGGTCCACTGCTGCCTGCCCAGCGGAGACTGTCGC
AAACTGGACACCCTGATACACCTGAACGAGCTCTCCCTGGCGGACTGCAT
CCGTGTGCTGTGCAACAACGAGAACTGCAGCGCAGGCCAGTACATGCATC
GCGAGTGCTTCGAGTGGTGGGAGGCGAGCGTGCTGCAGGCACTGAAGGCC
AACGGTCGTGCTCGATCCTGGTCGGAGCGGCAGCGTCTGCAGCACCTGTG
GACCAAGAAGGGCTACGAGCTGGTCCAGAAGGCCTGCAGCTGCAAGTGCG
GCAGGGGACAATTGCGCAAGGACCTCGACTGGGTGCCGCCGAGCAGCCAG
GGCGTCATATACCTCAACGGGTCTGGCAACCGGCCCACTCTGGCCAATGG
CAGCCTCAGCGAGGACGACGACAAGAAGAAGGCCAAGAAGAAGAGGAACC
GCAACAACAACAACAACAACGGCGGCGGCGGTGGTGGTGGTGCTGGTGTC
AATGGCAACACCAAAACCCCCTTGAGCAACAACAACGGCAACAGCTACGC
CGGACTCACGCCCAATCCCAATGTGGGCGTCATAGGGTCGGGTTTGCCCC
ACAACAACGGCAACACCGCCAGCAATGGCAGCAGTGGCAACAACGGCTCC
TCCGGCGTTCTGCAGACCAGTGCGCTGGCCACTTTCAGCAACATCCTCAA
TACGAACAATGTCCTCGGCCTGGACCTGCGCGCCAGGGCTGGCAGCCTAT
CCTCCAGTGGAGCTGGCAGTGGATCCACCTCGCCCTCGGACTCCCAGTCC
AGTGGCGAGATATCCGTGTCGCCGGTGCAGCAATTGCTGCCACAGCAGCA
GCAGCAACAGCAGCAGTCGCTGCTGATCCAGCCTCTGGGTCCAGCTTTCG
GCAGCAACCTTTTGCAAAATGGATTGGGCTTGTCCAAGAATCTGCTGATT
GCTCCCCAGCAGCAGCAGCAGCAGCAGCTGCAACAACAACAGCAGCAGCA
GAATAACCTGCCTGCTTTGGCCAATATCAGCAACTTCAAGCCATTGGCCA
GCTACGAGCAGCAGCAACTTGTGCAGCAGCAGAAGAACAAGGAGGTCGAA
CTCTATTCCGATCGAGTGCGCTCCACATCTGGCTGCAATGGGATCTTTTC
GCGTCGCCTGGACTTTTCGTCGTTCAATTTGCTGCCAAAGACTCGTTTGA
ATTCTTATCAAGTCAAGATTGAGGACGAGGGCAACCACGGCAACGATGAG
ACGCGCCTGTTCATCCTCTCATCGCTGGCCCAATCCCAGATGAGCCGGGT
GGCCTGCATTCTGTGCGAGGAGCCGCTGCTCGTATTCGATCGCTATCCAC
TGGTTGATGGCTCCTTCTTTCTGAGTCCCAAGCAGCATTCCAGCGGCTGC
ATCGAGGTTAAATACGAGGGACGCACTCTCTACTTGACCTGTGTTTGCAT
GAGCTGCCTGGACGGAACCTCCAGCAGCCGGGCCATCAACTGCAGATTCT
GCAAGGAGCCGTGGGATGGCTCCAGCCTGGTTTTGGGCACCATGTACGCC
TACGACATCTTTGCGGCCATGCCCTGTTGCGCCGAGCGGTTCAAGTGCAA
TAACTGCTTCAAGATGCTAATGCATCCGCAGCAGCGTCTGAGCTTCTACA
GTGACTACTCGCACGGAGTGACCTGTCCGTATTGCAACACGCAGGACACG
CACTTCGTTAAGCCGCTGACCTTCTGCTACGCCAAGACCACGGCGACGCG
GCTGCCGACGCTCGCAGCAAGCTTTCTAGACCAT

BO11530.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
hdc-RD 1953 CG15532-PD 1..1950 17..1966 9750 100 Plus
hdc-RC 3243 CG15532-PC 1..1950 17..1966 9750 100 Plus
hdc-RA 1953 CG15532-PA 1..1950 17..1966 9750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
hdc-RD 14807 CG15532-RD 1013..2962 17..1966 9750 100 Plus
hdc-RC 4518 CG15532-RC 1013..2962 17..1966 9750 100 Plus
hdc-RA 4518 CG15532-RA 1013..2962 17..1966 9750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30278944..30280247 17..1320 6520 100 Plus
3R 32079331 3R 30358248..30358440 1416..1608 965 100 Plus
3R 32079331 3R 30360365..30360537 1794..1966 865 100 Plus
3R 32079331 3R 30360137..30360241 1691..1795 525 100 Plus
3R 32079331 3R 30309151..30309248 1320..1417 490 100 Plus
3R 32079331 3R 30359971..30360061 1605..1695 455 100 Plus
Blast to na_te.dros performed 2014-11-27 08:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6867 1157..1293 198 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2870 799..1282 182 54.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2981 620..1290 180 53.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2487 641..748 153 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2508 647..847 151 55 Plus
roo 9092 roo DM_ROO 9092bp 1048..1169 626..751 143 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2793..3005 706..925 136 55.2 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 504..552 700..748 119 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2989 601..842 116 54.9 Plus

BO11530.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:37 Download gff for BO11530.complete
Subject Subject Range Query Range Percent Splice Strand
hdc-RC 1011..2960 17..1968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:48 Download gff for BO11530.complete
Subject Subject Range Query Range Percent Splice Strand
hdc-RA 1013..2962 17..1968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:44 Download gff for BO11530.complete
Subject Subject Range Query Range Percent Splice Strand
hdc-RA 1013..2962 17..1968 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:44 Download gff for BO11530.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30278944..30280247 17..1320 100 -> Plus
3R 30309152..30309248 1321..1417 100 -> Plus
3R 30358250..30358438 1418..1606 100 -> Plus
3R 30359973..30360061 1607..1695 100 -> Plus
3R 30360142..30360241 1696..1795 100 -> Plus
3R 30360367..30360537 1796..1968 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:48 Download gff for BO11530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26104666..26105969 17..1320 100 -> Plus
arm_3R 26134874..26134970 1321..1417 100 -> Plus
arm_3R 26183972..26184160 1418..1606 100 -> Plus
arm_3R 26185695..26185783 1607..1695 100 -> Plus
arm_3R 26185864..26185963 1696..1795 100 -> Plus
arm_3R 26186089..26186259 1796..1968 98   Plus

BO11530.3prime Sequence

853 bp (836 high quality bases) assembled on 2006-04-19

> BO11530.3prime
ATGGTCTAGAAAGCTTGCTGCGAGCGTCGGCAGCCGCGTCGCCGTGGTCT
TGGCGTAGCAGAAGGTCAGCGGCTTAACGAAGTGCGTGTCCTGCGTGTTG
CAATACGGACAGGTCACTCCGTGCGAGTAGTCACTGTAGAAGCTCAGACG
CTGCTGCGGATGCATTAGCATCTTGAAGCAGTTATTGCACTTGAACCGCT
CGGCGCAACAGGGCATGGCCGCAAAGATGTCGTAGGCGTACATGGTGCCC
AAAACCAGGCTGGAGCCATCCCACGGCTCCTTGCAGAATCTGCAGTTGAT
GGCCCGGCTGCTGGAGGTTCCGTCCAGGCAGCTCATGCAAACACAGGTCA
AGTAGAGAGTGCGTCCCTCGTATTTAACCTCGATGCAGCCGCTGGAATGC
TGCTTGGGACTCAGAAAGAAGGAGCCATCAACCAGTGGATAGCGATCGAA
TACGAGCAGCGGCTCCTCGCACAGAATGCAGGCCACCCGGCTCATCTGGG
ATTGGGCCAGCGATGAGAGGATGAACAGGCGCGTCTCATCGTTGCCGTGG
TTGCCCTCGTCCTCAATCTTGACTTGATAAGAATTCAAACGAGTCTTTGG
CAGCAAATTGAACGACGAAAAGTCCAGGCGACGCGAAAAGATCCCATTGC
AGCCAGATGTGGAGCGCACTCGATCGGAATAGAGTTCGACCTCCTTGTTC
TTCTGCTGCTGCACAAGTTGCTGCTGCTCGTAGCTGGCCAATGGCTTGAA
GTTGCTGATATTGGCCAAAGCAGGCAGGTTATTCTGCTGCTGCTGTTGTT
GTTGCAGCTGCTGCTGCTGCTGCTGCTGGGGAGCAATCAGCAGATTCTTG
GAC

BO11530.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG15532-PA 1953 hdc-RA 1116..1950 853..19 4175 100 Minus
CG15532-PC 3243 hdc-RC 1116..1950 853..19 4175 100 Minus
CG15532-PB 606 hdc-RB 54..603 568..19 2750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
hdc-RD 14807 CG15532-RD 2128..2962 853..19 4175 100 Minus
hdc-RC 4518 CG15532-RC 2128..2962 853..19 4175 100 Minus
hdc-RA 4518 CG15532-RA 2128..2962 853..19 4175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30358248..30358440 569..377 965 100 Minus
3R 32079331 3R 30280059..30280247 853..665 945 100 Minus
3R 32079331 3R 30360365..30360537 191..19 865 100 Minus
3R 32079331 3R 30360137..30360241 294..190 525 100 Minus
3R 32079331 3R 30309151..30309248 665..568 490 100 Minus
3R 32079331 3R 30359971..30360061 380..290 455 100 Minus
Blast to na_te.dros performed 2015-02-12 13:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6743..6867 828..692 198 65.7 Minus

BO11530.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:09:08 Download gff for BO11530.3prime
Subject Subject Range Query Range Percent Splice Strand
hdc-PA 1116..1953 15..853 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:33:56 Download gff for BO11530.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15532-PC 1116..1953 15..853 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:28:14 Download gff for BO11530.3prime
Subject Subject Range Query Range Percent Splice Strand
hdc-RA 2128..2965 15..853 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:11:36 Download gff for BO11530.3prime
Subject Subject Range Query Range Percent Splice Strand
hdc-RA 2128..2965 15..853 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:11:36 Download gff for BO11530.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30359973..30360061 290..378 100 -> Minus
3R 30360142..30360241 190..289 100 -> Minus
3R 30360367..30360540 15..189 98   Minus
3R 30280059..30280247 665..853 100 -> Minus
3R 30309152..30309248 568..664 100 -> Minus
3R 30358250..30358438 379..567 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:28:14 Download gff for BO11530.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26105781..26105969 665..853 100 -> Minus
arm_3R 26134874..26134970 568..664 100 -> Minus
arm_3R 26183972..26184160 379..567 100 -> Minus
arm_3R 26185695..26185783 290..378 100 -> Minus
arm_3R 26185864..26185963 190..289 100 -> Minus
arm_3R 26186089..26186262 15..189 98   Minus

BO11530.5prime Sequence

827 bp (778 high quality bases) assembled on 2006-04-19

> BO11530.5prime
GAAGTTATCAGTCGACATGGCTCCGCGTCGCAACAGCAACATCAGCAGCA
GCGGCAACAGCACCCAGCAGCAGCACCAGCAACAGTTGCAGCAGCAGCAC
CAGACGCAGCAGCATCAACTGCTGCAGTTCTACGCGGAGAACGTGAATTC
TTCAGGCGTCCTAATGGCGCCCATGCAGGGAACCGGTGGCGTTGGCGGCG
TTGGCGGCGGGGGCATGGTCCACTGCTGCCTGCCCAGCGGAGACTGTCGC
AAACTGGACACCCTGATACACCTGAACGAGCTCTCCCTGGCGGACTGCAT
CCGTGTGCTGTGCAACAACGAGAACTGCAGCGCAGGCCAGTACATGCATC
GCGAGTGCTTCGAGTGGTGGGAGGCGAGCGTGCTGCAGGCACTGAAGGCC
AACGGTCGTGCTCGATCCTGGTCGGAGCGGCAGCGTCTGCAGCACCTGTG
GACCAAGAAGGGCTACGAGCTGGTCCAGAAGGCCTGCAGCTGCAAGTGCG
GCAGGGGACAATTGCGCAAGGACCTCGACTGGGTGCCGCCGAGCAGCCAG
GGCGTCATATACCTCAACGGGTCTGGCAACCGGCCCACTCTGGCCAATGG
CAGCCTCAGCGAGGACGACGACAAGAAGAAGGCCAAGAAGAAGAGGAACC
GCAACAACAACAACAACAACGGCGGCGGCGGTGGTGGTGGTGCTGGTGTC
AATGGCAACACCAAAACCCCCTTGAGCAACAACAACGGCAACAGCTACGC
CGGACTCACGCCCAATCCCAATGTGGGCGTCATAGGGTCGGGTTTGCCCC
ACAACAACGGCAACACCGCCAGCAATG

BO11530.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15532-PA 1953 hdc-RA 1..811 17..827 4055 100 Plus
CG15532-PC 3243 hdc-RC 1..811 17..827 4055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
hdc-RD 14807 CG15532-RD 1013..1823 17..827 4055 100 Plus
hdc-RC 4518 CG15532-RC 1013..1823 17..827 4055 100 Plus
hdc-RA 4518 CG15532-RA 1013..1823 17..827 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30278944..30279754 17..827 4055 100 Plus
Blast to na_te.dros performed 2015-02-11 10:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2438 620..753 166 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2380..2487 641..748 153 60.2 Plus
roo 9092 roo DM_ROO 9092bp 1048..1169 626..751 143 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2486 647..825 140 55.6 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 504..552 700..748 119 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2793..2842 706..754 112 72 Plus

BO11530.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:09:09 Download gff for BO11530.5prime
Subject Subject Range Query Range Percent Splice Strand
hdc-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:33:57 Download gff for BO11530.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15532-PC 1..811 17..827 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:38:16 Download gff for BO11530.5prime
Subject Subject Range Query Range Percent Splice Strand
hdc-RA 1013..1823 17..827 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:34 Download gff for BO11530.5prime
Subject Subject Range Query Range Percent Splice Strand
hdc-RA 1013..1823 17..827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:34 Download gff for BO11530.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30278944..30279754 17..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:38:16 Download gff for BO11530.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26104666..26105476 17..827 100   Plus

BO11530.pep Sequence

Translation from 16 to 1984

> BO11530.pep
MAPRRNSNISSSGNSTQQQHQQQLQQQHQTQQHQLLQFYAENVNSSGVLM
APMQGTGGVGGVGGGGMVHCCLPSGDCRKLDTLIHLNELSLADCIRVLCN
NENCSAGQYMHRECFEWWEASVLQALKANGRARSWSERQRLQHLWTKKGY
ELVQKACSCKCGRGQLRKDLDWVPPSSQGVIYLNGSGNRPTLANGSLSED
DDKKKAKKKRNRNNNNNNGGGGGGGAGVNGNTKTPLSNNNGNSYAGLTPN
PNVGVIGSGLPHNNGNTASNGSSGNNGSSGVLQTSALATFSNILNTNNVL
GLDLRARAGSLSSSGAGSGSTSPSDSQSSGEISVSPVQQLLPQQQQQQQQ
SLLIQPLGPAFGSNLLQNGLGLSKNLLIAPQQQQQQQLQQQQQQQNNLPA
LANISNFKPLASYEQQQLVQQQKNKEVELYSDRVRSTSGCNGIFSRRLDF
SSFNLLPKTRLNSYQVKIEDEGNHGNDETRLFILSSLAQSQMSRVACILC
EEPLLVFDRYPLVDGSFFLSPKQHSSGCIEVKYEGRTLYLTCVCMSCLDG
TSSSRAINCRFCKEPWDGSSLVLGTMYAYDIFAAMPCCAERFKCNNCFKM
LMHPQQRLSFYSDYSHGVTCPYCNTQDTHFVKPLTFCYAKTTATRLPTLA
ASFLDH

BO11530.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
hdc-PD 650 CG15532-PD 1..650 1..650 3453 100 Plus
hdc-PC 1080 CG15532-PC 1..650 1..650 3453 100 Plus
hdc-PA 650 CG15532-PA 1..650 1..650 3453 100 Plus
hdc-PB 201 CG15532-PB 17..201 466..650 1010 99.5 Plus