Clone Sequence Records
BO11532.3prime Sequence
844 bp (821 high quality bases) assembled on 2006-04-19
> BO11532.3prime
ATGGTCTAGAAAGCTTGCACGGATGCTCTGTCGGAACACGCTCTGTTTGC
CCTTGCTGGTCGAAACTGCCTTCTTGGACGCCAACGGATCGGGAGCGAAG
CAGTTCCAAAGACGCAGGGTTTCATCAGCTCCGGCGCTGATCACTGTGCT
GCCGTCCGGAGACATGGCCATCTGGAGAACTCGTGACGTGTGTCCAGTCA
AATCGGCTTGCTTCACCATTGTTGGGTATTTCCAAATGGTCAGTTGGTTG
TTAGCAAAACCATGCGCAGAGATCAGCTCCTTGTAGTGGCGAGAAAAGAG
CAGAGAACAGACCTGCGACTTGGAGTCCACGGATTTCATTAAAGTGCCAT
TGTTCACATTCCAGAACTTGATGCAGCGATCGGCGGTGCCGCCTCCAGAG
GCTAGAGTACTTGGTTGCCAGGGACACCAGGCCAAGGCACGCACTGCAGC
TTGATGGTCGTTGAATTTGTGCAAGGGATCGGTGGCAGTTCCCACGCCAC
CGCTGGCCGCCGACCAAACATTCACCAGATTGTCGTTGCCTCCGCTAGCC
AAATACTTGAAATCCGTGGACCACTTTAGGCCGCAAACCTCCTGCGTGTG
TCCGGACAATGTGGAAAGCTTGTGCTCACGTGCACGCACATCGTGGTGGA
CAATGGTGCCATCCCGGCTGCCAGAGGAAACCAGGAATGAGTTCCAGGCC
AAGGATCCCACTCGGGCACTGTGTCCATCCATCACTCGCAGACGCTTCAC
TTTGGAGCAGTCCCACAGCTCCACGGCACCGGTGCTGTTGCCGATGGCAA
GTATCTGCCCCTCCTGGATCCACGATAGCGAGCCTGCGTAGTCG
BO11532.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4274-PA | 1581 | fzy-RA | 753..1578 | 844..19 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fzy-RA | 1996 | CG4274-RA | 898..1723 | 844..19 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16311999..16312824 | 844..19 | 4130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 11:24:41 has no hits.
BO11532.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:09:12 Download gff for
BO11532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fzy-PA | 753..1581 | 16..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:34:01 Download gff for
BO11532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4274-PA | 753..1581 | 16..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:37:26 Download gff for
BO11532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fzy-RA | 898..1732 | 12..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:11:57 Download gff for
BO11532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fzy-RA | 898..1732 | 12..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:11:57 Download gff for
BO11532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16311999..16312833 | 12..844 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:37:26 Download gff for
BO11532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16311999..16312833 | 12..844 | 99 | | Minus |
BO11532.5prime Sequence
909 bp (834 high quality bases) assembled on 2006-04-19
> BO11532.5prime
GAAGTTATCAGTCGACATGTCGCAGTTCAATTTTGTGAGCGATTTGCAGA
ATGCTCTCATCATGGACGGCGAGACGCGCGGACCTGCGCCCAGGTGGAAG
AAGAAGCTGGAGGCGTCTCTAAATGGAAGTGTGAATACCACTCGGTCGGT
GCTATCCGTCTCGTACAACACCAGTTTCTCGGGTGTCCAGGCGCCCACGA
AAACTCCGGGCAAGAGCAGCGAGGGCAAGACCAAGAAGTCCAACACCACG
CCCTCTAAGACGCCAGGAGGCGGAGATCGCTTTATTCCGAATCGGGCGGC
TACCAACTTTGAGTTAGCACACTTTCTGGTGAACAAAGACTCCGGCGATA
AGTCCGATGAGGAGAACGACAAGGCCACCTCGAGCAACAGCAACGAGAGC
AATGTCCAGGCTTCGGCTCACAAGGGCGACCGGCAGAAACTCATCTCTGA
AGTGGCCCAGGTCGGTGACTCCAAGGGCGGGCGCATTTTGTGCTACCAAA
ACAAGGCTCCCGCTGCTCCAGAAACACACAACAATCCCCTGAAGGTCGTG
TACTCCATTAAGACACCCATATCCACAAAGAGTGGCTCACGCTATATACC
CACCACATCCGAGAGGATTCTGGATGCACCTGATTTTATTAACGATTACT
ATTTAAATCTTATGGATTGGAGTGCCGACAATATAGTGGCTGTGGCCTTG
GGCAGTTGCGTCTATTTGTGGAACGCACAGACCGGAAATATCGAGCAGCT
TACGGAGTTTGAGGAGGGCGACTACGCAGGCTCGCTATCGTGGATCCAGG
AGGGGCAGATACTTGCCATCGGCAACAGCACCGGTGCCGTGGAGCTGTGG
GACTGCTCCAAAGTGAAGCGTCTGCGAGTGATGGATGGGACCAGTGCCCG
AGTGGGATC
BO11532.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4274-PA | 1581 | fzy-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fzy-RA | 1996 | CG4274-RA | 146..1038 | 17..909 | 4420 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16311505..16311827 | 328..650 | 1615 | 100 | Plus |
2L | 23513712 | 2L | 16311101..16311414 | 17..330 | 1570 | 100 | Plus |
2L | 23513712 | 2L | 16311881..16312139 | 651..909 | 1250 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:43:09 has no hits.
BO11532.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:09:13 Download gff for
BO11532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fzy-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:34:03 Download gff for
BO11532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4274-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:59:57 Download gff for
BO11532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fzy-RA | 142..1038 | 9..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:12:52 Download gff for
BO11532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fzy-RA | 142..1038 | 9..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:12:52 Download gff for
BO11532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16311097..16311412 | 9..328 | 98 | -> | Plus |
2L | 16311506..16311827 | 329..650 | 100 | -> | Plus |
2L | 16311881..16312139 | 651..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:59:57 Download gff for
BO11532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16311097..16311412 | 9..328 | 98 | -> | Plus |
arm_2L | 16311506..16311827 | 329..650 | 100 | -> | Plus |
arm_2L | 16311881..16312139 | 651..909 | 99 | | Plus |
BO11532.complete Sequence
1612 bp assembled on 2006-10-10
GenBank Submission: FJ632105
> BO11532.complete
GAAGTTATCAGTCGACATGTCGCAGTTCAATTTTGTGAGCGATTTGCAGA
ATGCTCTCATCATGGACGGCGAGACGCGCGGACCTGCGCCCAGGTGGAAG
AAGAAGCTGGAGGCGTCTCTAAATGGAAGTGTGAATACCACTCGGTCGGT
GCTATCCGTCTCGTACAACACCAGTTTCTCGGGTGTCCAGGCGCCCACGA
AAACTCCGGGCAAGAGCAGCGAGGGCAAGACCAAGAAGTCCAACACCACG
CCCTCTAAGACGCCAGGAGGCGGAGATCGCTTTATTCCGAATCGGGCGGC
TACCAACTTTGAGTTAGCACACTTTCTGGTGAACAAAGACTCCGGCGATA
AGTCCGATGAGGAGAACGACAAGGCCACCTCGAGCAACAGCAACGAGAGC
AATGTCCAGGCTTCGGCTCACAAGGGCGACCGGCAGAAACTCATCTCTGA
AGTGGCCCAGGTCGGTGACTCCAAGGGCGGGCGCATTTTGTGCTACCAAA
ACAAGGCTCCCGCTGCTCCAGAAACACACAACAATCCCCTGAAGGTCGTG
TACTCCATTAAGACACCCATATCCACAAAGAGTGGCTCACGCTATATACC
CACCACATCCGAGAGGATTCTGGATGCACCTGATTTTATTAACGATTACT
ATTTAAATCTTATGGATTGGAGTGCCGACAATATAGTGGCTGTGGCCTTG
GGCAGTTGCGTCTATTTGTGGAACGCACAGACCGGAAATATCGAGCAGCT
TACGGAGTTTGAGGAGGGCGACTACGCAGGCTCGCTATCGTGGATCCAGG
AGGGGCAGATACTTGCCATCGGCAACAGCACCGGTGCCGTGGAGCTGTGG
GACTGCTCCAAAGTGAAGCGTCTGCGAGTGATGGATGGACACAGTGCCCG
AGTGGGATCCTTGGCCTGGAACTCATTCCTGGTTTCCTCTGGCAGCCGGG
ATGGCACCATTGTCCACCACGATGTGCGTGCACGTGAGCACAAGCTTTCC
ACATTGTCCGGACACACGCAGGAGGTTTGCGGCCTAAAGTGGTCCACGGA
TTTCAAGTATTTGGCTAGCGGAGGCAACGACAATCTGGTGAATGTTTGGT
CGGCGGCCAGCGGTGGCGTGGGAACTGCCACCGATCCCTTGCACAAATTC
AACGACCATCAAGCTGCAGTGCGTGCCTTGGCCTGGTGTCCCTGGCAACC
AAGTACTCTAGCCTCTGGAGGCGGCACCGCCGATCGCTGCATCAAGTTCT
GGAATGTGAACAATGGCACTTTAATGAAATCCGTGGACTCCAAGTCGCAG
GTCTGTTCTCTGCTCTTTTCTCGCCACTACAAGGAGCTGATCTCTGCGCA
TGGTTTTGCTAACAACCAACTGACCATTTGGAAATACCCAACAATGGTGA
AGCAAGCCGATTTGACTGGACACACGTCACGAGTTCTCCAGATGGCCATG
TCTCCGGACGGCAGCACAGTGATCAGCGCCGGAGCTGATGAAACCCTGCG
TCTTTGGAACTGCTTCGCTCCCGATCCGTTGGCGTCCAAGAAGGCAGTTT
CGACCAGCAAGGGCAAACAGAGCGTGTTCCGACAGAGCATCCGTGCAAGC
TTTCTAGACCAT
BO11532.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fzy-RA | 1581 | CG4274-PA | 1..1578 | 17..1594 | 7890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fzy-RA | 1996 | CG4274-RA | 146..1723 | 17..1594 | 7890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16311881..16312824 | 651..1594 | 4720 | 100 | Plus |
2L | 23513712 | 2L | 16311505..16311827 | 328..650 | 1615 | 100 | Plus |
2L | 23513712 | 2L | 16311101..16311414 | 17..330 | 1570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:45:29 has no hits.
BO11532.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:21 Download gff for
BO11532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fzy-RA | 1..1581 | 17..1597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:32 Download gff for
BO11532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fzy-RA | 169..1759 | 9..1601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:40 Download gff for
BO11532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fzy-RA | 146..1723 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:21 Download gff for
BO11532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fzy-RA | 169..1759 | 9..1601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:39 Download gff for
BO11532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fzy-RA | 146..1723 | 17..1596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:39 Download gff for
BO11532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16311101..16311412 | 17..328 | 100 | -> | Plus |
2L | 16311506..16311827 | 329..650 | 100 | -> | Plus |
2L | 16311881..16312824 | 651..1596 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:40 Download gff for
BO11532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16311506..16311827 | 329..650 | 100 | -> | Plus |
arm_2L | 16311881..16312824 | 651..1596 | 99 | | Plus |
arm_2L | 16311101..16311412 | 17..328 | 100 | -> | Plus |
BO11532.pep Sequence
Translation from 16 to 1612
> BO11532.pep
MSQFNFVSDLQNALIMDGETRGPAPRWKKKLEASLNGSVNTTRSVLSVSY
NTSFSGVQAPTKTPGKSSEGKTKKSNTTPSKTPGGGDRFIPNRAATNFEL
AHFLVNKDSGDKSDEENDKATSSNSNESNVQASAHKGDRQKLISEVAQVG
DSKGGRILCYQNKAPAAPETHNNPLKVVYSIKTPISTKSGSRYIPTTSER
ILDAPDFINDYYLNLMDWSADNIVAVALGSCVYLWNAQTGNIEQLTEFEE
GDYAGSLSWIQEGQILAIGNSTGAVELWDCSKVKRLRVMDGHSARVGSLA
WNSFLVSSGSRDGTIVHHDVRAREHKLSTLSGHTQEVCGLKWSTDFKYLA
SGGNDNLVNVWSAASGGVGTATDPLHKFNDHQAAVRALAWCPWQPSTLAS
GGGTADRCIKFWNVNNGTLMKSVDSKSQVCSLLFSRHYKELISAHGFANN
QLTIWKYPTMVKQADLTGHTSRVLQMAMSPDGSTVISAGADETLRLWNCF
APDPLASKKAVSTSKGKQSVFRQSIRASFLDH
BO11532.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fzy-PA | 526 | CG4274-PA | 1..526 | 1..526 | 2761 | 100 | Plus |
rap-PA | 478 | CG3000-PA | 23..459 | 75..501 | 874 | 41.3 | Plus |
rap-PB | 478 | CG3000-PB | 23..459 | 75..501 | 874 | 41.3 | Plus |
fzr2-PA | 451 | CG16783-PA | 123..439 | 188..508 | 733 | 42.4 | Plus |
wds-PB | 361 | CG17437-PB | 96..357 | 232..497 | 206 | 26.2 | Plus |