Clone Sequence Records
BO11550.3prime Sequence
419 bp (233 high quality bases) assembled on 2006-04-19
> BO11550.3prime
ATGGTCTAGAAAGCTTGCAGTTGGATGCGGGGAGTCGCGGCAGTATGTAT
TCCAAGTCGAACTTGGCTCCGATGCGAGGCACTCGATGCTTCCTTCGGGT
GACCGCCTGGGATGATGTCGTTGCTGTGGGCGCGTTCGCACTGCCTGTTG
AGACCCCATCAGATTCGGACTGCGACGCAGCCGGCTTAATTTCAAGCGTT
TGCATCAGTCCAATCACCTGTTCGCCTGCTGATTGTACCGGAAGACTATA
ACTGGCCTTTGTGTCTATAGTCTCGTTCGTCGGTTGCTGCAACACAGGCG
AACGACTAGGATTCTCGGTGGCATCCACGTCCTGACGACCGGCTGGTTGG
ACGCGATTTAATTTCTTGGGACGGTACGCCTGTATGGGCACAAAATCTTG
GATCGTTGAGTATCGCGGT
BO11550.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3291-PA | 4839 | pcm-RA | 4437..4817 | 419..39 | 1805 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pcm-RA | 5260 | CG3291-RA | 4635..5034 | 419..19 | 1920 | 98.8 | Minus |
| pcm-RB | 5384 | CG3291-RB | 4635..5037 | 419..19 | 1880 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19486405..19486639 | 185..419 | 1130 | 98.7 | Plus |
| X | 23542271 | X | 19486260..19486340 | 106..186 | 405 | 100 | Plus |
| X | 23542271 | X | 19486106..19486195 | 19..109 | 390 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:49:39 has no hits.
BO11550.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:09:45 Download gff for
BO11550.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-PA | 4437..4839 | 15..419 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:34:40 Download gff for
BO11550.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3291-PA | 4437..4839 | 15..419 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:22:45 Download gff for
BO11550.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-RA | 4575..4978 | 14..419 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:36:38 Download gff for
BO11550.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-RA | 4635..5038 | 14..419 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:36:38 Download gff for
BO11550.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19486405..19486639 | 185..419 | 98 | | Plus |
| X | 19486102..19486192 | 14..106 | 95 | <- | Plus |
| X | 19486261..19486338 | 107..184 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:22:45 Download gff for
BO11550.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19380135..19380225 | 14..106 | 95 | <- | Plus |
| arm_X | 19380294..19380371 | 107..184 | 100 | <- | Plus |
| arm_X | 19380438..19380672 | 185..419 | 98 | | Plus |
BO11550.5prime Sequence
546 bp (462 high quality bases) assembled on 2006-04-19
> BO11550.5prime
GAAGTTATCAGTCGACATGGGCGTTCCCAAGTTCTTTCGCTACATCAGCG
AGCGATATCCGTGCCTCAGCGAATTGGCGCGGGAGCACTGCATACCCGAG
TTCGACAATCTGTACTTGGACATGAACGGCATTGTCCACAACTGCTCGCA
TCCGGACGACAACAACATACACTTTCACCTGGAGGAGGAGCAGATATTCC
AGGAAATCTTCAACTACGTAGACAAGCTGTTCTACCTGATCAAGCCGCAG
CGCCTCTTCTTCCTTTCAGTTGACGGGGTGGCTCCACGGGCCAAGATGAA
CCAGCAGCGCAGCCGGCGATTCCGGACGGCGCGCGAGGCGGAGCAGCAGG
AGGCCAAGGCGGCCCAGCGAGGCGAGTTGCGAGAGCACGAGCGCTTCGAC
AGCAACTGCATTACGCCGGGCACCGAATTCATGGTGCGTCTGCAGGAGGG
ACTGCGCGCCTTTCTCAAAACGAAGATTTCGACGGATCCGCTGTGGCAGC
GTTGCACCGTAATCCTAAGTGGCCAGGAGGCGCCCGGCGAGGGCGA
BO11550.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3291-PA | 4839 | pcm-RA | 1..530 | 17..546 | 2650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pcm-RB | 5384 | CG3291-RB | 195..728 | 13..546 | 2670 | 100 | Plus |
| pcm-RA | 5260 | CG3291-RA | 195..728 | 13..546 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19491225..19491679 | 546..92 | 2275 | 100 | Minus |
| X | 23542271 | X | 19491739..19491817 | 91..13 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:17:39 has no hits.
BO11550.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:09:46 Download gff for
BO11550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-PA | 1..529 | 17..545 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:34:42 Download gff for
BO11550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3291-PA | 1..529 | 17..545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:04:18 Download gff for
BO11550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-RA | 128..667 | 3..545 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:12 Download gff for
BO11550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-RA | 188..727 | 3..545 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:12 Download gff for
BO11550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19491226..19491679 | 92..545 | 100 | <- | Minus |
| X | 19491739..19491824 | 3..91 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:04:18 Download gff for
BO11550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19385259..19385712 | 92..545 | 100 | <- | Minus |
| arm_X | 19385772..19385857 | 3..91 | 95 | | Minus |
BO11550.complete Sequence
4870 bp assembled on 2008-11-10
GenBank Submission: KX798765
> BO11550.complete
GAAGTTATCAGTCGACATGGGCGTTCCCAAGTTCTTTCGCTACATCAGCG
AGCGATATCCGTGCCTCAGCGAATTGGCGCGGGAGCACTGCATACCCGAG
TTCGACAATCTGTACTTGGACATGAACGGCATTGTCCACAACTGCTCGCA
TCCGGACGACAACAACATACACTTTCACCTGGAGGAGGAGCAGATATTCC
AGGAAATCTTCAACTACGTAGACAAGCTGTTCTACCTGATCAAGCCGCAG
CGCCTCTTCTTCCTTTCAGTTGACGGGGTGGCTCCACGGGCCAAGATGAA
CCAGCAGCGCAGCCGGCGATTCCGGACGGCGCGCGAGGCGGAGCAGCAGG
AGGCCAAGGCGGCCCAGCGAGGCGAGTTGCGAGAGCACGAGCGCTTCGAC
AGCAACTGCATTACGCCGGGCACCGAATTCATGGTGCGTCTGCAGGAGGG
ACTGCGCGCCTTTCTCAAAACGAAGATTTCGACGGATCCGCTGTGGCAGC
GTTGCACCGTAATCCTAAGTGGCCAGGAGGCGCCCGGCGAGGGCGAGCAC
AAGATCATGGACTACATTCGGTACATGAAGACGCAGCCGGACTATGATCC
CAATACACGACACTGCCTTTACGGCCTGGACGCCGATCTGATCATTCTGG
GCCTCTGCACCCACGAGCTGCACTTCGTGGTGCTGCGCGAGGAGGTCAAG
TTCGGGCGCAACGTCAAGCGCACCTCGGTGGAGGAGACGCGCTTCTTCCT
GCTGCACCTGGGTCTGCTGCGCGAGTACCTCGAGCTGGAGTTCGACGCCC
TGAGAACAGACGAGCACAAATTGGACATTGCGCAGCTTATCGACGACTGG
GTGCTGATGGGCTTTTTGGTCGGCAACGACTTCATTCCCCACCTGCCGTG
CCTGCACATTTCATCAAATGCACTGCCGCTGCTCTACCGCACCTACATCG
GCATTTACCCGACCCTCGGCGGCAACATCAACGAGAACGGCAAGCTCAAC
CTGCGCCGCTTGCAGATTTTCATATCGGCCCTCACCGAGGTGGAGCTGGA
TCACTTCAAGGAGCACGCCGACGACTTGAAGTACATGAACAACAAATCAG
AGGCGTTCGACATGGACGTCGGCGAGATCACCGAGTCTCAAAACCTCGAC
TCCGATCTCGGAGCCCTCATCAACAAGAGCATGCTGCTCTACGATGACGA
CAGCGAGGAGGACTGCTCCGACGAGAACGCGGTTCTTCTGAAGGAGTTCC
AGAACTACAAGCGAAACTTCTACCGCAACAAGTTCAAGCGTGATCCGAAT
GATGAACTGATCGAGGAACTGTGCCACCACTACGTCAATGCGCTGCAGTG
GGTGCTCGACTACTACTACCGTGGCGTGCAGTCCTGGGACTGGTACTATC
CCTTCCACTACACTCCATTCATCAGCGACCTCAAGAACATCGAGCAGGTG
GAGATCGCCTTCCACATGGGCACGCCCTTTCTGCCATTCCAGCAGCTTCT
GGCGGTACTGCCGGCGGCCAGTGCAAAGCTTCTCCCTGTCGCCTACCACG
ACCTCATGCTGCTGCCGACCAGCCCGCTGGCCGAGTTCTATCCACTGGAG
TTCGAGAGCGACCTCAATGGCAAGAAACACGATTGGGAGGCGGTTGTGCT
GATACCCTTCATCGATGAGGGTCGGCTGCTGGCCGCTATGCTGCCATGCG
AGGCTCAGCTGTCGCTGGAGGAGCGCGAACGCAACCGACACGGTCCCATG
TATGTGTACAAATACAGTACGGTGGCGCAGGGTCCCATGCCAGCGTATCC
ACCGCTGAGGGCTCTTCCCGTGCTCTACTGCACGGAGGTGGCCAAGTGGT
CGCACGAAATCGCAGTCAATCTGCCGTACAGCGTGTGCATCGAGCTACCA
AATGCGGCGAGAACCGTTTTCTTCCCGGGATTTCCCACCATGCAGCATCT
GCCCTTCGATTTCGAGCTGCGCAACGACCGCGTCAAGGTGTTCGAACAGG
TCAGTCGCAACCAGAACATTGTGCTAAAACCACGCAAGCGCCAGCTGGAG
GACACACTGACGGCGGTGGCCTCCCAGTACCTCGGGAAGGTGATCCACGT
CGGCTGGCCGCATCTCGTCAAGGCGATAGTGGTGCGCGTGGCCACGCGAG
ATCAGCGCGTCGACAGCGAGGGAATCACGCTAAACGATTCGCGGCGTTTC
GACTCGGAATGCAAGGCACTGCAGGAACACTTTATCAATCGTATGGGAAT
ACAGTTTGCCAACTATGATGTGCTCGTCTATGTGCGCACCTTTGCCGGCA
ATTCGACGGAGTTCCGCGACAAGGGGGCATTGATGGTGCGCGACTCGTGG
AGCAGCTCCGTCACCGGCTATCCAGCCCAGGGCGTGGTGGCCGATCTGAC
TGTGTGGGAAAGAATGCGCAAGAATTTCCTCAACGTGGAGCACTACTTCC
CCGTTGGCAGCACGATCTTCTTGATCACGGATCCGTATTACGGCAGCGAG
GGAACTGTGCAGGACCCACGGCTGGCCTACACCAACGGCCGGATTCAAGT
CAGCATCATGGTGCGACCGGAACCGAAAGTAAATGCGGCACGTCAGCTGC
AGGAAGAGCGGGACCGGGACTATCTGAGCACCTTCCAGGTCTGCAACTTG
CTCCGAATCAGTGGCCGCACCCTGGGACGCCTAAGTGGCACCGTGTGGGT
GGTGCTCGGTCCGCGGCGTCAGAAGATGGAAAACGTGACCAAGCACAACA
TTGGCCTGCAGCTCAAGTATCCGCGGCAGAACGAGGAGCGTGCCGGATAC
TGCTTCCGCACGAACAACCAGTGGTACTACTCCAGCCTGGCCGTGGATCT
GATGCGTAACTATTGCCAGCGTTACCCAGACGTTATCGACTTCTTTGGCG
ACTCCAACGATCGCGCCGAGTTCGTATTCGAACAGGACGTGTTCCCCAAT
GCGGTTGGCCATCGCCGCGTCGAGGAACTGGCCAACTGGGTGCGCCAGCA
GCCGCACATGAAAGTGGAGCGCATCTCTTGCGGCTCCAAGACGGTCTGCC
GCGAGACCATCGAACTGCTGATAGCCGCCGTCGACGACCTGCGCTCACTG
CCCGTCAAGCACGTTAAACTGCAGGTGAAGCCGCACTTGCTCATCAAGCC
CAATGTCACACTGCCAGATGTCTACCGATCAAAGCGCCCGGTGCGTCTCT
TCGATCGCGTCGTAATCGTACGCACCATTTACATGGTGCCCGTGGGCACT
AAGGGCACCGTGATTGGCATTCATCCCGTTACGGACCCCAACCCGGTCCG
CCTGGAGTGCGTCCATGCTGTCGACACGTTCTGCAAGGTGCTGTTCGACA
GCCCCGTTCCGAACTGCAACAACATCCATGGCATCGCCGAAGACCGAGTT
TACAAGGTGCCCGAAATTGCCCTGGTGATCATCAAGACGGATGAGGAAGG
AAAGAAGCAGAACGACTGCGAACTGCCGGTGAGGGATCCTCAGCCGAACC
AGGCACAGGACGAGCCAGTCCGCGCGACCAGCAGTCGCTATGTGACCGCC
GCAGGGTCCACCTCGGTCCCGATCACGATGAAGACCCAAATTAGCGACGA
ATTCGTCAAGACGCGTAGCGATCCGATAGCCCGTACGGATTCGTACAAGC
CATCGTCGGAGCCAAAACCGGTGCCGGTGCCGGAGCAGATTACCAACTGG
CGGGAACGCGTCAGTACGCCAACAAACAAACCGCAGCCTGCGCCAAATAA
TTGGCGCATAAATCGGTCTTCATCACGTCAACAGGGCGGTAGTATTTTTG
TTGCTCCGCCCACAAAAACTCCTGATGCAGCTGCAAGCACTGCTTCCACT
GCATTCACCGCAGCCTCGTCCGCAACGCTGACTCCTCTGGATCAGACCTT
GGCGCTCATGTCGGTTTTGGGCGTGGGTGAGGACCAGAGCTCGCCGCCAC
TCCAGGAGGCGGTGCAGCAGCAACGTCCGCCACTACTTCAACAGCAAAGA
GCTCCGTTTCCCGGACAAATGCCCAATCTACCCAAGCCACCGCTCTTCTG
GCAGCAAGAGGCGCAGAAGCAGGAGGCGCTGCAGCAGGAGGCGCAGCAGC
AGGAGGCGCAGAAGAAGCAGCAGCAGGCGCATGCGCAAATGGAGCCTGAA
CGTATCAATAGCCAGCATTTCTACAGAAGCGGCCAGACAGGAGCGGCGTT
GAATCAGCCGCCATTGGGTGCTCCATCAAAAAGGCAGTGGCATGAGTGGG
TGCACCCGCGCATGCAGCACGCCAACGCATTCCACGCTGGCGTCAACAAT
GGATATCAGATGCGTCCCAAAAAGAATATAGCTGCGCAGAGCACCTTTAA
CAACAACGTGCACATGCACCTCCAGCAACCATATTACCCGAATCAGCAGC
AGCAGCAGCAGCAGCAGCAGCCACTCCAGCTGACGGAGATCAACAATGCG
CCACCGCGATACTCAACGATCCAAGATTTTGTGCCCATACAGGCGTACCG
TCCCAAGAAATTAAATCGCGTCCAACCAGCCGGTCGTCAGGACGTCGATG
CCACCAAGAATCCTAGTCGTTCGCCTGTGTTGCAGCAACCGACGAACGAG
ACTATAGACACAAAGGCCAGTTCTAGTCTTCCGGTACAATCAGCAGGCGA
ACAGGTGATTGGACTGATGCAAACGCTTGAAATTAAGCCGGCTGCGTCGC
AGTCCGAATCTGATGGGGTCTCAACAGGCAGTGCGAACGCGCCCACAGCA
ACGACATCATCCCAGGCGGTCAACCGAAGGAAGCATCGAGTGCCTCGCAT
CGGAGCCAAGTTCGACTTGGAATACATACTGCCCGACTCCCCGCATCCAA
CTGCAAGCTTTCTAGACCAT
BO11550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pcm-RA | 4839 | CG3291-PA | 1..4836 | 17..4852 | 24165 | 100 | Plus |
| pcm-RB | 4842 | CG3291-PB | 1..4839 | 17..4852 | 24100 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pcm-RA | 5260 | CG3291-RA | 195..5034 | 13..4852 | 24185 | 100 | Plus |
| pcm-RB | 5384 | CG3291-RB | 195..5037 | 13..4852 | 24120 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19490585..19491679 | 1186..92 | 5475 | 100 | Minus |
| X | 23542271 | X | 19487792..19488687 | 3443..2548 | 4465 | 99.9 | Minus |
| X | 23542271 | X | 19486405..19487067 | 4687..4025 | 3315 | 100 | Minus |
| X | 23542271 | X | 19487132..19487713 | 4024..3443 | 2910 | 100 | Minus |
| X | 23542271 | X | 19489485..19489951 | 1960..1494 | 2335 | 100 | Minus |
| X | 23542271 | X | 19488739..19489058 | 2549..2230 | 1600 | 100 | Minus |
| X | 23542271 | X | 19490207..19490516 | 1495..1186 | 1550 | 100 | Minus |
| X | 23542271 | X | 19489142..19489410 | 2229..1961 | 1345 | 100 | Minus |
| X | 23542271 | X | 19486106..19486195 | 4852..4763 | 450 | 100 | Minus |
| X | 23542271 | X | 19486260..19486340 | 4766..4686 | 405 | 100 | Minus |
| X | 23542271 | X | 19491739..19491817 | 91..13 | 395 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..7273 | 3964..4516 | 220 | 54.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2954 | 3944..4126 | 150 | 55.9 | Plus |
BO11550.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:15:59 Download gff for
BO11550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-RA | 128..4978 | 3..4857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:15 Download gff for
BO11550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-RA | 139..4974 | 17..4854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:28 Download gff for
BO11550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-RA | 139..4974 | 17..4854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:37 Download gff for
BO11550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pcm-RA | 199..5034 | 17..4854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:37 Download gff for
BO11550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19486104..19486192 | 4766..4854 | 97 | <- | Minus |
| X | 19486261..19486338 | 4688..4765 | 100 | <- | Minus |
| X | 19486405..19487067 | 4025..4687 | 100 | <- | Minus |
| X | 19487132..19487712 | 3444..4024 | 100 | <- | Minus |
| X | 19487792..19488685 | 2550..3443 | 99 | <- | Minus |
| X | 19488739..19489058 | 2230..2549 | 100 | <- | Minus |
| X | 19489142..19489410 | 1961..2229 | 100 | <- | Minus |
| X | 19489485..19489949 | 1496..1960 | 100 | <- | Minus |
| X | 19490207..19490515 | 1187..1495 | 100 | <- | Minus |
| X | 19490585..19491679 | 92..1186 | 100 | <- | Minus |
| X | 19491739..19491813 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:15 Download gff for
BO11550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19380137..19380225 | 4766..4854 | 97 | <- | Minus |
| arm_X | 19380294..19380371 | 4688..4765 | 100 | <- | Minus |
| arm_X | 19380438..19381100 | 4025..4687 | 100 | <- | Minus |
| arm_X | 19381165..19381745 | 3444..4024 | 100 | <- | Minus |
| arm_X | 19381825..19382718 | 2550..3443 | 99 | <- | Minus |
| arm_X | 19382772..19383091 | 2230..2549 | 100 | <- | Minus |
| arm_X | 19383175..19383443 | 1961..2229 | 100 | <- | Minus |
| arm_X | 19383518..19383982 | 1496..1960 | 100 | <- | Minus |
| arm_X | 19384240..19384548 | 1187..1495 | 100 | <- | Minus |
| arm_X | 19384618..19385712 | 92..1186 | 100 | <- | Minus |
| arm_X | 19385772..19385846 | 17..91 | 100 | | Minus |
BO11550.pep Sequence
Translation from 16 to 4870
> BO11550.pep
MGVPKFFRYISERYPCLSELAREHCIPEFDNLYLDMNGIVHNCSHPDDNN
IHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSR
RFRTAREAEQQEAKAAQRGELREHERFDSNCITPGTEFMVRLQEGLRAFL
KTKISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHC
LYGLDADLIILGLCTHELHFVVLREEVKFGRNVKRTSVEETRFFLLHLGL
LREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISS
NALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVELDHFKEH
ADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALINKSMLLYDDDSEEDC
SDENAVLLKEFQNYKRNFYRNKFKRDPNDELIEELCHHYVNALQWVLDYY
YRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPA
ASAKLLPVAYHDLMLLPTSPLAEFYPLEFESDLNGKKHDWEAVVLIPFID
EGRLLAAMLPCEAQLSLEERERNRHGPMYVYKYSTVAQGPMPAYPPLRAL
PVLYCTEVAKWSHEIAVNLPYSVCIELPNAARTVFFPGFPTMQHLPFDFE
LRNDRVKVFEQVSRNQNIVLKPRKRQLEDTLTAVASQYLGKVIHVGWPHL
VKAIVVRVATRDQRVDSEGITLNDSRRFDSECKALQEHFINRMGIQFANY
DVLVYVRTFAGNSTEFRDKGALMVRDSWSSSVTGYPAQGVVADLTVWERM
RKNFLNVEHYFPVGSTIFLITDPYYGSEGTVQDPRLAYTNGRIQVSIMVR
PEPKVNAARQLQEERDRDYLSTFQVCNLLRISGRTLGRLSGTVWVVLGPR
RQKMENVTKHNIGLQLKYPRQNEERAGYCFRTNNQWYYSSLAVDLMRNYC
QRYPDVIDFFGDSNDRAEFVFEQDVFPNAVGHRRVEELANWVRQQPHMKV
ERISCGSKTVCRETIELLIAAVDDLRSLPVKHVKLQVKPHLLIKPNVTLP
DVYRSKRPVRLFDRVVIVRTIYMVPVGTKGTVIGIHPVTDPNPVRLECVH
AVDTFCKVLFDSPVPNCNNIHGIAEDRVYKVPEIALVIIKTDEEGKKQND
CELPVRDPQPNQAQDEPVRATSSRYVTAAGSTSVPITMKTQISDEFVKTR
SDPIARTDSYKPSSEPKPVPVPEQITNWRERVSTPTNKPQPAPNNWRINR
SSSRQQGGSIFVAPPTKTPDAAASTASTAFTAASSATLTPLDQTLALMSV
LGVGEDQSSPPLQEAVQQQRPPLLQQQRAPFPGQMPNLPKPPLFWQQEAQ
KQEALQQEAQQQEAQKKQQQAHAQMEPERINSQHFYRSGQTGAALNQPPL
GAPSKRQWHEWVHPRMQHANAFHAGVNNGYQMRPKKNIAAQSTFNNNVHM
HLQQPYYPNQQQQQQQQQPLQLTEINNAPPRYSTIQDFVPIQAYRPKKLN
RVQPAGRQDVDATKNPSRSPVLQQPTNETIDTKASSSLPVQSAGEQVIGL
MQTLEIKPAASQSESDGVSTGSANAPTATTSSQAVNRRKHRVPRIGAKFD
LEYILPDSPHPTASFLDH
BO11550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pcm-PA | 1612 | CG3291-PA | 1..1612 | 1..1612 | 8524 | 100 | Plus |
| pcm-PB | 1613 | CG3291-PB | 1..1613 | 1..1612 | 8512 | 99.9 | Plus |
| Rat1-PB | 908 | CG10354-PB | 1..664 | 1..581 | 1116 | 38.8 | Plus |
| Rat1-PA | 908 | CG10354-PA | 1..664 | 1..581 | 1116 | 38.8 | Plus |
| kis-PF | 5191 | CG3696-PF | 368..855 | 1159..1586 | 174 | 24.6 | Plus |
